BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5550.p         (129 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777775.1| dihydroneopterin aldolase [Herbaspirillum se...   254   2e-66
ref|YP_001355127.1| dihydroneopterin aldolase [Janthinobacterium...   221   2e-56
ref|YP_724779.1| dihydroneopterin aldolase [Ralstonia eutropha H...   221   3e-56
ref|YP_001101420.1| hypothetical protein HEAR3192 [Herminiimonas...   220   4e-56
ref|YP_001795596.1| dihydroneopterin aldolase [Cupriavidus taiwa...   218   3e-55

>ref|YP_003777775.1| dihydroneopterin aldolase [Herbaspirillum seropedicae SmR1]
 gb|ADJ65867.1| dihydroneopterin aldolase protein [Herbaspirillum seropedicae SmR1]
          Length = 131

 Score =  254 bits (650), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 127/128 (99%), Positives = 128/128 (100%)

Query: 1   MLFLSHPSLQDCRRLFLRNYEVFINIGVHEFEKKGEQRILINVDLYVPLAETTPTADHLD 60
           MLFLSHPSLQDCRRLFLRNYEVFINIGVHEFEKKGEQRILINVDLYVPLAETTPTADHLD
Sbjct: 1   MLFLSHPSLQDCRRLFLRNYEVFINIGVHEFEKKGEQRILINVDLYVPLAETTPTADHLD 60

Query: 61  EVVDYDFIRSTIAERMARGHIHLQETLCDDVMTAMLAHPKVRAVRVSTEKPDVYPDCDSV 120
           EVVDYDFIRSTIA+RMARGHIHLQETLCDDVMTAMLAHPKVRAVRVSTEKPDVYPDCDSV
Sbjct: 61  EVVDYDFIRSTIAQRMARGHIHLQETLCDDVMTAMLAHPKVRAVRVSTEKPDVYPDCDSV 120

Query: 121 GVETFRIK 128
           GVETFRIK
Sbjct: 121 GVETFRIK 128


>ref|YP_001355127.1| dihydroneopterin aldolase [Janthinobacterium sp. Marseille]
 gb|ABR88347.1| dihydroneopterin aldolase [Janthinobacterium sp. Marseille]
          Length = 131

 Score =  221 bits (564), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 106/127 (83%), Positives = 117/127 (92%)

Query: 3   FLSHPSLQDCRRLFLRNYEVFINIGVHEFEKKGEQRILINVDLYVPLAETTPTADHLDEV 62
           FL HP L DCRRLFLRNYEV INIGVHEFEKKGEQR+LINVDL++PL E+TPTAD+LDEV
Sbjct: 4   FLFHPQLADCRRLFLRNYEVQINIGVHEFEKKGEQRVLINVDLFIPLKESTPTADNLDEV 63

Query: 63  VDYDFIRSTIAERMARGHIHLQETLCDDVMTAMLAHPKVRAVRVSTEKPDVYPDCDSVGV 122
           VDYD++RSTIA+RMA GHIHLQETLCDDV+ AMLAHPKVRA RVSTEKPDVYPDC+SVGV
Sbjct: 64  VDYDYMRSTIAKRMAEGHIHLQETLCDDVVKAMLAHPKVRAARVSTEKPDVYPDCESVGV 123

Query: 123 ETFRIKA 129
           E F+IK 
Sbjct: 124 EVFQIKG 130


>ref|YP_724779.1| dihydroneopterin aldolase [Ralstonia eutropha H16]
 ref|YP_004684106.1| dihydroneopterin aldolase FolB [Cupriavidus necator N-1]
 emb|CAJ91411.1| dihydroneopterin aldolase [Ralstonia eutropha H16]
 gb|AEI75625.1| dihydroneopterin aldolase FolB [Cupriavidus necator N-1]
          Length = 133

 Score =  221 bits (562), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 106/125 (84%), Positives = 117/125 (93%)

Query: 4   LSHPSLQDCRRLFLRNYEVFINIGVHEFEKKGEQRILINVDLYVPLAETTPTADHLDEVV 63
           LSHPSLQDCRR+FLRNYEV INIGVHEFEKKGEQR+LIN+DL+VPLA++TP AD LDEVV
Sbjct: 7   LSHPSLQDCRRMFLRNYEVQINIGVHEFEKKGEQRVLINIDLFVPLAQSTPQADKLDEVV 66

Query: 64  DYDFIRSTIAERMARGHIHLQETLCDDVMTAMLAHPKVRAVRVSTEKPDVYPDCDSVGVE 123
           DYDF+R+T+AERMA+GH+HLQETLCDDV  AML HPKVRAVRVSTEKPDVYPDCDSVGVE
Sbjct: 67  DYDFMRNTVAERMAQGHVHLQETLCDDVARAMLKHPKVRAVRVSTEKPDVYPDCDSVGVE 126

Query: 124 TFRIK 128
            F IK
Sbjct: 127 VFHIK 131


>ref|YP_001101420.1| hypothetical protein HEAR3192 [Herminiimonas arsenicoxydans]
 emb|CAL63299.1| Putative dihydroneopterin aldolase [Herminiimonas arsenicoxydans]
          Length = 131

 Score =  220 bits (561), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 107/127 (84%), Positives = 116/127 (91%)

Query: 3   FLSHPSLQDCRRLFLRNYEVFINIGVHEFEKKGEQRILINVDLYVPLAETTPTADHLDEV 62
           FL HP L DCRRLFL NYEV INIGVHEFEKKGEQR+LINVDL++PL E+TPTAD LDEV
Sbjct: 4   FLFHPQLADCRRLFLSNYEVQINIGVHEFEKKGEQRVLINVDLFIPLTESTPTADTLDEV 63

Query: 63  VDYDFIRSTIAERMARGHIHLQETLCDDVMTAMLAHPKVRAVRVSTEKPDVYPDCDSVGV 122
           VDYDF+RSTIA+RM +GHIHLQETLCDDV+ AMLAHPKVRAVRVSTEKPDVYPDC+SVGV
Sbjct: 64  VDYDFMRSTIAKRMEQGHIHLQETLCDDVVKAMLAHPKVRAVRVSTEKPDVYPDCESVGV 123

Query: 123 ETFRIKA 129
           E FRIK 
Sbjct: 124 EVFRIKG 130


>ref|YP_001795596.1| dihydroneopterin aldolase [Cupriavidus taiwanensis LMG 19424]
 emb|CAP62874.1| putative Dihydroneopterin aldolase [Cupriavidus taiwanensis LMG
           19424]
          Length = 133

 Score =  218 bits (554), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 105/125 (84%), Positives = 114/125 (91%)

Query: 4   LSHPSLQDCRRLFLRNYEVFINIGVHEFEKKGEQRILINVDLYVPLAETTPTADHLDEVV 63
           LSHPSLQDCRR+FLRNYEV INIGVHEFEKKGEQR+LIN+DL+VPL E TP AD LDEVV
Sbjct: 7   LSHPSLQDCRRMFLRNYEVQINIGVHEFEKKGEQRVLINIDLFVPLEECTPQADKLDEVV 66

Query: 64  DYDFIRSTIAERMARGHIHLQETLCDDVMTAMLAHPKVRAVRVSTEKPDVYPDCDSVGVE 123
           DYDF+R+T+A RMA+GH+HLQETLCDDV  AML HPKVRAVRVSTEKPDVYPDCDSVGVE
Sbjct: 67  DYDFMRNTVAARMAQGHVHLQETLCDDVARAMLKHPKVRAVRVSTEKPDVYPDCDSVGVE 126

Query: 124 TFRIK 128
            F IK
Sbjct: 127 VFHIK 131