BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5545.p (444 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777771.1| transmembrane sensor histidine kinase [Herba... 734 0.0 ref|YP_004753959.1| sensory histidine kinase QseC [Collimonas fu... 471 e-131 ref|YP_002008921.1| sensory histidine kinase in two-component re... 368 1e-99 ref|YP_299514.1| sensor histidine kinase [Ralstonia eutropha JMP... 362 1e-97 ref|YP_587925.1| sensory histidine kinase in two-component regul... 349 7e-94 >ref|YP_003777771.1| transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ65863.1| transmembrane sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 444 Score = 734 bits (1895), Expect = 0.0, Method: Composition-based stats. Identities = 411/444 (92%), Positives = 421/444 (94%) Query: 1 MKSIRNKLLLWLGLGLFSIIVLAGVALYFQARGEANQIFDYQMRQIAASLPRQAFSPISP 60 M S+RNKLLLWLGLGLFSIIVLAGVALYFQARGEANQIFDYQMRQIAASLPRQAFSPISP Sbjct: 1 MNSVRNKLLLWLGLGLFSIIVLAGVALYFQARGEANQIFDYQMRQIAASLPRQAFSPISP 60 Query: 61 GQQFPELEDEIMMQIWDSRGSVIYHSHARGAMPRQAELGFANVRGPNGMWRVYSAQIGST 120 GQQFPELEDEIMMQIWDSRG+VIYHSHARGAMPRQAELGFANV GPNGMWRVYSAQIGST Sbjct: 61 GQQFPELEDEIMMQIWDSRGAVIYHSHARGAMPRQAELGFANVSGPNGMWRVYSAQIGST 120 Query: 121 VVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAAAEVAARDM 180 VVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAAAEVAARDM Sbjct: 121 VVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAAAEVAARDM 180 Query: 181 NSLQPLSDVGMPQEIQPLTHALNDLLARLKHATETQRAFVADAAHELRTPLTALRLQAQL 240 NSLQPL+DVGMPQEIQPLTHALNDLLARLKHATETQRAFVADAAHELRTPLTALRLQ QL Sbjct: 181 NSLQPLADVGMPQEIQPLTHALNDLLARLKHATETQRAFVADAAHELRTPLTALRLQTQL 240 Query: 241 AERATDEVERRAAFADLKNGLERATHLVHQLLTLARQEPDAMNFAEVDLRALLGSVVGDL 300 AERA DE ERRAAFADLKNGLER THLVHQLLTLARQEPDAM+F +VDLRALLGSVVGDL Sbjct: 241 AERAVDEEERRAAFADLKNGLERTTHLVHQLLTLARQEPDAMSFTQVDLRALLGSVVGDL 300 Query: 301 SSVADHGGIDLGLSDQGDDGRPVRVQGNADALRILFNNLVDNALRYTPAGGVVDVGFEFP 360 SSVA+HGGIDLGLSDQGDDGRP+RV GNADALRILFNNLVDNALRYTPAGGVVDVG + Sbjct: 301 SSVAEHGGIDLGLSDQGDDGRPLRVTGNADALRILFNNLVDNALRYTPAGGVVDVGVDLS 360 Query: 361 AGGVCAVVIQDSGPGIAESELPRVFDRFYRAQRAQEQGSSRGAFGSGLGLAIVRQIADLH 420 G C VV+QDSGPGIAESELPRVFDRFYRAQ +QE SR AFGSGLGLAIVRQIADLH Sbjct: 361 TAGYCTVVVQDSGPGIAESELPRVFDRFYRAQHSQEGSGSRAAFGSGLGLAIVRQIADLH 420 Query: 421 RVPVELRNTGRGLQARVVFTLLPA 444 RVPVELRNTG GLQARVVF L PA Sbjct: 421 RVPVELRNTGHGLQARVVFPLSPA 444 >ref|YP_004753959.1| sensory histidine kinase QseC [Collimonas fungivorans Ter331] gb|AEK63136.1| Sensory histidine kinase QseC [Collimonas fungivorans Ter331] Length = 437 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 286/423 (67%), Positives = 336/423 (79%), Gaps = 13/423 (3%) Query: 20 IVLAGVALYFQARGEANQIFDYQMRQIAASLPRQAFSPISP-GQQFPELEDEIMMQIWDS 78 I++AG+ALYFQARGEAN++FDYQMRQI ASLPRQAFSP++ G PEL+D+IM+QIWD+ Sbjct: 23 ILVAGIALYFQARGEANELFDYQMRQIVASLPRQAFSPMTENGDGGPELDDQIMIQIWDN 82 Query: 79 RGSVIYHSHARGAMPRQAELGFANVRGPNGMWRVYSAQIGSTVVQVAQPQSARDEIAAQM 138 G VIYHSH + ++P QAELGF NVR NG+WRVYSAQIG+TVVQ+AQPQSAR++IAAQM Sbjct: 83 TGVVIYHSHGQASLPPQAELGFTNVRQSNGLWRVYSAQIGNTVVQIAQPQSARNQIAAQM 142 Query: 139 AVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAAAEVAARDMNSLQPLSDVGMPQEIQPL 198 AVKTV PLLLLFPL+G+L WVAVSRGLAP+R+AA EV ARDM++L P+ D +P EIQPL Sbjct: 143 AVKTVTPLLLLFPLLGLLIWVAVSRGLAPIRRAAMEVQARDMHALSPIPDATLPGEIQPL 202 Query: 199 THALNDLLARLKHATETQRAFVADAAHELRTPLTALRLQAQLAERATDEVERRAAFADLK 258 T ALNDLLARL + + QRAFVADAAHELRTPLTALRLQ QLAERA E ER+AAF DLK Sbjct: 203 TQALNDLLARLGQSIKAQRAFVADAAHELRTPLTALRLQVQLAERAAGEGERQAAFGDLK 262 Query: 259 NGLERATHLVHQLLTLARQEPDAMN--FAEVDLRALLGSVVGDLSSVADHGGIDLGLSDQ 316 GLERATHL+ QLLTLARQEP A + AE+DLRALL SV+GD + A +DLG+S + Sbjct: 263 QGLERATHLLQQLLTLARQEPGAFDQAHAELDLRALLHSVIGDFALTAHERQVDLGISTE 322 Query: 317 GDDGRPVRVQGNADALRILFNNLVDNALRYTPAGGVVDVGFEFPAGGVCAVVIQDSGPGI 376 P V GNADALRILFNNL+DNAL+Y+PAGG +DV A GV V +QD GPGI Sbjct: 323 ----MPASVTGNADALRILFNNLIDNALQYSPAGGTIDVSLAAGAAGV-TVTVQDGGPGI 377 Query: 377 AESELPRVFDRFYRAQRAQEQGSSRGAFGSGLGLAIVRQIADLHRVPVELRNTGRGLQAR 436 E++L RVFDRFYRA +Q Q GSGLGLAIV+QIAD H+ V L+NTG GL+A Sbjct: 378 PEADLARVFDRFYRAADSQSQTR-----GSGLGLAIVKQIADAHQASVSLQNTGHGLRAS 432 Query: 437 VVF 439 V F Sbjct: 433 VRF 435 >ref|YP_002008921.1| sensory histidine kinase in two-component regulatory system; signal peptide [Cupriavidus taiwanensis LMG 19424] emb|CAQ72869.1| Putative sensory histidine kinase in two-component regulatory system; signal peptide [Cupriavidus taiwanensis LMG 19424] Length = 441 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 238/447 (53%), Positives = 293/447 (65%), Gaps = 16/447 (3%) Query: 1 MKSIRNKLLLWLGLGLFSIIVLAGVALYFQARGEANQIFDYQMRQIAASLPRQAFSPISP 60 M+SI+ LL WL GL + I +A +Y QAR EAN +FDYQM+Q+AA+LP Q +P++P Sbjct: 1 MRSIQRTLLAWLAAGLVAGIAIATALIYGQARQEANALFDYQMKQMAAALPSQFPNPVAP 60 Query: 61 G-----QQFPELEDEIMMQIWDSRGSVIYHSHARGAMPRQAELGFANVRGPNGMWRVYSA 115 ++++++ IWD G +Y SHA A+P +AELGF+N+ G WR+YS Sbjct: 61 PFVGAPGDLAHADEDVVIHIWDGSGRSLYLSHAHPALPARAELGFSNLTTQQGEWRLYSM 120 Query: 116 QIGSTVVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAAAEV 175 Q+G VVQ+AQP SAR +AA+MA++TV PLLLL PL+G L W+AV RGL P+R+ A EV Sbjct: 121 QLGPAVVQIAQPMSARRTLAARMALRTVAPLLLLLPLLGWLVWMAVGRGLRPLREIATEV 180 Query: 176 AARDMNSLQPLSDVGMPQEIQPLTHALNDLLARLKHATETQRAFVADAAHELRTPLTALR 235 ARD N+L PL+ MP EI PL+ ALN LLARL HA +TQRAFVADAAH LRTPLTAL+ Sbjct: 181 RARDANTLAPLAVRPMPDEIAPLSAALNQLLARLSHAIDTQRAFVADAAHALRTPLTALQ 240 Query: 236 LQAQLAERATDEVERRAAFADLKNGLERATHLVHQLLTLARQEPDAM--NFAEVDLRALL 293 LQAQL ERA D R A A L+ GLER THLV QLLTLARQEP A V+L L Sbjct: 241 LQAQLVERADDGAARDEAIAKLRQGLERLTHLVTQLLTLARQEPGAAVPPHEPVELHQLA 300 Query: 294 GSVVGDLSSVADHGGIDLGLSDQGDDGRPVRVQGNADALRILFNNLVDNALRYTPAGGVV 353 +VV D++ A IDLGL D + P V+G+ADALRIL NLVDNAL Y PAGG + Sbjct: 301 AAVVADMAQAALDRDIDLGL-DGSANAAPAVVRGDADALRILLTNLVDNALAYIPAGGRI 359 Query: 354 DVGFEFPAGG-VCAVVIQDSGPGIAESELPRVFDRFYRAQRAQEQGSSRGAFGSGLGLAI 412 DV + G +V+ D+GPGI E RVFDRFYR A GSGLGLAI Sbjct: 360 DVAVRRGSDGRSVELVVSDNGPGIPAEERARVFDRFYRVADAPTG-------GSGLGLAI 412 Query: 413 VRQIADLHRVPVELRNTGRGLQARVVF 439 V +IA H V L + G GL+ RVVF Sbjct: 413 VAEIAQSHGARVVLEDAGPGLRVRVVF 439 >ref|YP_299514.1| sensor histidine kinase [Ralstonia eutropha JMP134] gb|AAZ64670.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Ralstonia eutropha JMP134] Length = 444 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 238/451 (52%), Positives = 293/451 (64%), Gaps = 22/451 (4%) Query: 1 MKSIRNKLLLWLGLGLFSIIVLAGVALYFQARGEANQIFDYQMRQIAASLPRQAFSPISP 60 M+SI+ LL WL GL + I +A V +Y QAR EAN +FDYQM+Q+AA+LP Q P++P Sbjct: 1 MRSIQRTLLWWLAAGLMAGIAIATVLIYGQARQEANALFDYQMKQVAAALPSQFADPVAP 60 Query: 61 --------GQQFPELEDEIMMQIWDSRGSVIYHSHARGAMPRQAELGFANVRGPNGMWRV 112 G ++++++ IWD G +Y SHA A+P +AELGF+NV G WR+ Sbjct: 61 PFLMEGGPGADLLHADEDVVIHIWDGSGRSLYLSHAHPALPARAELGFSNVTTGEGEWRL 120 Query: 113 YSAQIGSTVVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAA 172 YS Q+G VVQ+AQP SAR +AA+MA++TV PLLLL PL+ L W+AV RGL P+R+ A Sbjct: 121 YSMQLGPAVVQIAQPMSARRTLAARMALRTVAPLLLLLPLLAWLVWMAVGRGLRPLREIA 180 Query: 173 AEVAARDMNSLQPLSDVGMPQEIQPLTHALNDLLARLKHATETQRAFVADAAHELRTPLT 232 EV ARD N+L PL+ MP EI PL+ ALN LL RL HA +TQRAFVADAAH LRTPLT Sbjct: 181 TEVRARDANALTPLAVRPMPDEIAPLSDALNQLLGRLSHAIDTQRAFVADAAHALRTPLT 240 Query: 233 ALRLQAQLAERATDEVERRAAFADLKNGLERATHLVHQLLTLARQEPDAMNFAE--VDLR 290 AL+LQAQL ERA D RR A ++L+ GLER THLV QLLTLARQEP A+ + VDL Sbjct: 241 ALQLQAQLVERAEDPQARRQAVSNLRQGLERLTHLVAQLLTLARQEPGAVTLPQEPVDLH 300 Query: 291 ALLGSVVGDLSSVADHGGIDLGLSDQGDDGRPV-RVQGNADALRILFNNLVDNALRYTPA 349 + +VV D++ A IDLGL D PV V G+ADALRIL NL+DNAL Y P Sbjct: 301 EVASTVVADMAQAALDREIDLGLD---ADSVPVASVHGDADALRILLTNLIDNALAYIPR 357 Query: 350 GGVVDVGFEFPAGG-VCAVVIQDSGPGIAESELPRVFDRFYRAQRAQEQGSSRGAFGSGL 408 G VDV GG +V+ D+GPGI +E RVFDRFYR A GSGL Sbjct: 358 GSRVDVQVRQATGGRAVQLVVSDNGPGIPAAERGRVFDRFYRLPDAPTG-------GSGL 410 Query: 409 GLAIVRQIADLHRVPVELRNTGRGLQARVVF 439 GLAIV +IA H V L + G GL+ RV F Sbjct: 411 GLAIVAEIAQSHGARVSLEDAGPGLRVRVTF 441 >ref|YP_587925.1| sensory histidine kinase in two-component regulatory system [Cupriavidus metallidurans CH34] gb|ABF12656.1| sensory histidine kinase in two-component regulatory system [Cupriavidus metallidurans CH34] Length = 443 Score = 349 bits (895), Expect = 7e-94, Method: Composition-based stats. Identities = 239/449 (53%), Positives = 293/449 (65%), Gaps = 20/449 (4%) Query: 1 MKSIRNKLLLWLGLGLFSIIVLAGVALYFQARGEANQIFDYQMRQIAASLPRQAFSPISP 60 M+SI+ LL WL GL I +A +Y QAR EAN +FDYQM+Q+AA+LP Q +P P Sbjct: 1 MRSIQRTLLWWLAAGLAVGIAVATALIYGQARQEANALFDYQMKQLAAALPSQFSAPAPP 60 Query: 61 --------GQQFPELEDEIMMQIWDSRGSVIYHSHARGAMPRQAELGFANVRGPNGMWRV 112 G ++++++ IWD G +Y SH+ A+P QAELGF+N + +G WR+ Sbjct: 61 PFDSGSATGADLLHADEDVVIHIWDGSGRSLYLSHSHPALPPQAELGFSNAQTNSGEWRI 120 Query: 113 YSAQIGSTVVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAA 172 YS Q+G VVQ+AQP SAR +AA MA++TV PLLLL PL+G L W+AV RGL P+R+ A Sbjct: 121 YSVQLGPAVVQIAQPMSARRTLAAHMALRTVAPLLLLLPLLGWLVWLAVGRGLRPLREIA 180 Query: 173 AEVAARDMNSLQPLSDVGMPQEIQPLTHALNDLLARLKHATETQRAFVADAAHELRTPLT 232 +EV+ARD N+L PLS MP EI PL+ ALN LL RL HA +TQRAFVADAAH LRTPL Sbjct: 181 SEVSARDANTLAPLSVRNMPVEIAPLSDALNQLLGRLAHAIDTQRAFVADAAHALRTPLA 240 Query: 233 ALRLQAQLAERATDEVERRAAFADLKNGLERATHLVHQLLTLARQEPDAM--NFAEVDLR 290 AL+LQAQL ERA + R+ A L+ GLER THLV QLLTLARQEP A+ +DLR Sbjct: 241 ALQLQAQLVERAENAEARQEAVGQLRQGLERLTHLVAQLLTLARQEPGAVPPPHEPIDLR 300 Query: 291 ALLGSVVGDLSSVADHGGIDLGLSDQGDDGRPVRVQGNADALRILFNNLVDNALRYTPAG 350 L VV D+S A + IDLGL D+ G V+G+ADALRIL NLVDNAL+Y P G Sbjct: 301 ELAVGVVADMSQAAINRDIDLGLDDKA--GSQATVRGDADALRILLTNLVDNALQYIPRG 358 Query: 351 GVVDVGFEFPAGGVCAVVIQDSGPGIAESELPRVFDRFYRAQRAQEQGSSRGAFGSGLGL 410 G +DV A GV VI D+GPGI+ +E RVFDRFYR A GSGLGL Sbjct: 359 GCIDVRVSEIAAGVELAVI-DNGPGISAAERERVFDRFYRVPDAPTG-------GSGLGL 410 Query: 411 AIVRQIADLHRVPVELRNTGRGLQARVVF 439 AIV +IA H V L + GL RVVF Sbjct: 411 AIVAEIAQSHGARVFLEDAAPGLCVRVVF 439