BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5544.p (494 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777770.1| periplasmic trypsin-like serine endoprotease... 835 0.0 ref|YP_004753961.1| putative periplasmic serine protease [Collim... 606 e-171 ref|YP_003750573.1| periplasmic protease; contains two pdz domai... 534 e-149 emb|CCA87166.1| periplasmic protease; contains two PDZ domain [R... 532 e-149 emb|CCA82848.1| periplasmic protease; contains two PDZ domain [b... 529 e-148 >ref|YP_003777770.1| periplasmic trypsin-like serine endoprotease [Herbaspirillum seropedicae SmR1] gb|ADJ65862.1| periplasmic trypsin-like serine endoprotease protein [Herbaspirillum seropedicae SmR1] Length = 494 Score = 835 bits (2157), Expect = 0.0, Method: Composition-based stats. Identities = 473/494 (95%), Positives = 487/494 (98%) Query: 1 MSRRIVFVRNTLAVMIAAVVGGSYVYFRGADLPSAHAAALNAPLVASNTAPTAPAGPVVA 60 MSRRIVFVRNTLAVMIAAVVGGSYVYFRGADLPSAHAAA+NAPLVASN+AP APAGPVVA Sbjct: 1 MSRRIVFVRNTLAVMIAAVVGGSYVYFRGADLPSAHAAAVNAPLVASNSAPAAPAGPVVA 60 Query: 61 AATDFSGIVQRYGPAVVNISVTGKARKVADDDDNGLDPNDPFSEFFKRFGPQLQMPQQPR 120 AATDFSGIVQRYGPAVVNISVTGKARKVADDDDNGLDPNDPFSEFFKRFGPQLQMPQQPR Sbjct: 61 AATDFSGIVQRYGPAVVNISVTGKARKVADDDDNGLDPNDPFSEFFKRFGPQLQMPQQPR 120 Query: 121 IMHGLGSGFIISPDGLILTNAHVVDGAQEVVVKLTDRREFKAKVLGIDKQSDIAVIRIDA 180 IMHGLGSGFIISPDGLILTNAHVVDGAQEVVVKLTDRREFKAKVLGIDKQSDIAVIRIDA Sbjct: 121 IMHGLGSGFIISPDGLILTNAHVVDGAQEVVVKLTDRREFKAKVLGIDKQSDIAVIRIDA 180 Query: 181 KNLPTVQIGDPSRVKVGQPVLAIGSPYGFDNTATAGIISAKSRSLPDDNYVPFIQTDVAV 240 KNLPTVQIGDPSRVKVGQPVLAIGSPYGFDNTATAGIISAKSRSLPDDNYVPFIQTDVAV Sbjct: 181 KNLPTVQIGDPSRVKVGQPVLAIGSPYGFDNTATAGIISAKSRSLPDDNYVPFIQTDVAV 240 Query: 241 NPGNSGGPLFDLNGQVIGINSQIYSQTGGFQGLSFSIPIDVAMKVEQQLVTHGKVTRGRL 300 NPGNSGGPLFDLNGQVIGINSQIYSQTGGFQGLSFSIPIDVAMKVEQQLVTHGKVTRGRL Sbjct: 241 NPGNSGGPLFDLNGQVIGINSQIYSQTGGFQGLSFSIPIDVAMKVEQQLVTHGKVTRGRL 300 Query: 301 GVSVQDLNQALSESFGLKKAEGALVSSVEKGSPADKAGLQAGDVILSFDGHAIDHSVDLP 360 GVSVQDLNQALS+SFGLKKAEGALVSSVEKGSPADKAGLQAGDVI+SF+GHAIDHSVDLP Sbjct: 301 GVSVQDLNQALSDSFGLKKAEGALVSSVEKGSPADKAGLQAGDVIISFNGHAIDHSVDLP 360 Query: 361 TLVADTAPGSSKPIQVMRGGKVLTMNVTVGEMKQAKNEAKPGKSDDQGRLGLAVRPLDKD 420 TLVADT PGS+KP++VMR GKV T+NVTVGEMKQAKN+AK KSDDQGRLGLAVRPLDKD Sbjct: 361 TLVADTPPGSTKPMEVMRAGKVRTINVTVGEMKQAKNDAKASKSDDQGRLGLAVRPLDKD 420 Query: 421 EQAQIGGQKGLLVEDASGPAAVAGIQSGDVILALNGTPVSSVAQLRKLASEAGKNVALLV 480 EQAQ+GGQKGLLVED SGPAAVAGIQSGDVILA+NGTPVSSVAQLRKLA++AGKNVALLV Sbjct: 421 EQAQLGGQKGLLVEDVSGPAAVAGIQSGDVILAVNGTPVSSVAQLRKLATDAGKNVALLV 480 Query: 481 ERGDEKIFVPLALN 494 ERGDEKIFVPLALN Sbjct: 481 ERGDEKIFVPLALN 494 >ref|YP_004753961.1| putative periplasmic serine protease [Collimonas fungivorans Ter331] gb|AEK63138.1| putative periplasmic serine protease [Collimonas fungivorans Ter331] Length = 507 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 343/498 (68%), Positives = 403/498 (80%), Gaps = 11/498 (2%) Query: 1 MSR--RIVFVRNTLAVMIAAVVGGSYVYFRGADL--PSAHAAALNAPLVASNTAPTAPAG 56 MSR R F+R+ +A+ + V GG+Y++ + D+ +A+AA + V SNTAP Sbjct: 15 MSRQTRQTFIRSAIAIAVLVVAGGTYLHSKNGDIGIDNANAAIVAPAPVVSNTAPA---- 70 Query: 57 PVVAAATDFSGIVQRYGPAVVNISVTGKARKVA-DDDDNGLDPNDPFSEFFKRFGPQLQM 115 VA ATDFSGIV+R GPAVVNISVTGKA++ A D D+ LDPNDPFS+FFKRFGPQLQ+ Sbjct: 71 --VAVATDFSGIVERAGPAVVNISVTGKAKQSAVSDQDDELDPNDPFSQFFKRFGPQLQI 128 Query: 116 PQQPRIMHGLGSGFIISPDGLILTNAHVVDGAQEVVVKLTDRREFKAKVLGIDKQSDIAV 175 P+ P+IM G GSGFIIS DGLILTNAHVV+GA EV VKLTDRREF+AKVLG DKQSDIAV Sbjct: 129 PRHPQIMRGEGSGFIISADGLILTNAHVVEGASEVTVKLTDRREFRAKVLGSDKQSDIAV 188 Query: 176 IRIDAKNLPTVQIGDPSRVKVGQPVLAIGSPYGFDNTATAGIISAKSRSLPDDNYVPFIQ 235 IRIDAKNLP VQIG+P+ +VG+PVLAIGSPYGF+NTATAGI+SAKSRSLPDD YVPFIQ Sbjct: 189 IRIDAKNLPIVQIGNPALTRVGEPVLAIGSPYGFENTATAGIVSAKSRSLPDDTYVPFIQ 248 Query: 236 TDVAVNPGNSGGPLFDLNGQVIGINSQIYSQTGGFQGLSFSIPIDVAMKVEQQLVTHGKV 295 TDVAVNPGNSGGPLF++ G+VIGINSQIYSQTGG+QGLSF+IPIDVA KVEQQLV HGKV Sbjct: 249 TDVAVNPGNSGGPLFNIKGEVIGINSQIYSQTGGYQGLSFAIPIDVATKVEQQLVKHGKV 308 Query: 296 TRGRLGVSVQDLNQALSESFGLKKAEGALVSSVEKGSPADKAGLQAGDVILSFDGHAIDH 355 TR LGVSVQ++NQAL+ESFGLK A GALVSSV+KGSPADK GLQ GDVIL F+G I H Sbjct: 309 TRSHLGVSVQEVNQALAESFGLKSAAGALVSSVDKGSPADKGGLQTGDVILRFNGQPISH 368 Query: 356 SVDLPTLVADTAPGSSKPIQVMRGGKVLTMNVTVGEMKQAKNEAKPGKSDDQGRLGLAVR 415 S DLP+LVADTAPG++ I+V+R G+ T+ V E + K + + Q RLGLA+R Sbjct: 369 SSDLPSLVADTAPGTASTIEVVRNGQPKTLTVKPTEAEAVKTASNDEGAGSQARLGLALR 428 Query: 416 PLDKDEQAQIGGQKGLLVEDASGPAAVAGIQSGDVILALNGTPVSSVAQLRKLASEAGKN 475 L DEQ Q+G GL+VEDASGP+A+AGIQ GDVIL+LNG PV+SV QLR+L S+AGKN Sbjct: 429 QLSPDEQQQVGIHGGLVVEDASGPSALAGIQRGDVILSLNGKPVNSVEQLRQLVSKAGKN 488 Query: 476 VALLVERGDEKIFVPLAL 493 VALLV+R +KIFVPL L Sbjct: 489 VALLVQRDKDKIFVPLNL 506 >ref|YP_003750573.1| periplasmic protease; contains two pdz domain [Ralstonia solanacearum PSI07] emb|CBJ35975.1| periplasmic protease; contains two PDZ domain [Ralstonia solanacearum PSI07] Length = 490 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 297/431 (68%), Positives = 352/431 (81%), Gaps = 1/431 (0%) Query: 64 DFSGIVQRYGPAVVNISVTGKARKVADDD-DNGLDPNDPFSEFFKRFGPQLQMPQQPRIM 122 DFSGIV+RYGPAVVNIS T A++ + G++P+DPF+EFFK F PQ+ Q +++ Sbjct: 59 DFSGIVERYGPAVVNISTTAHAQRTSIQGLPPGMNPDDPFAEFFKHFMPQMPQQQGDQVV 118 Query: 123 HGLGSGFIISPDGLILTNAHVVDGAQEVVVKLTDRREFKAKVLGIDKQSDIAVIRIDAKN 182 GLGSGFI+SPDGLILTNAHVVDGAQEV VKLTDRREFKAKVLG+DKQSD+AV+RI A+N Sbjct: 119 KGLGSGFIVSPDGLILTNAHVVDGAQEVSVKLTDRREFKAKVLGVDKQSDVAVLRIAARN 178 Query: 183 LPTVQIGDPSRVKVGQPVLAIGSPYGFDNTATAGIISAKSRSLPDDNYVPFIQTDVAVNP 242 LPTVQIG+P+ KVG+PVLAIGSPYGF+NT TAGI+SAKSRSLPDD YVPFIQTDVAVNP Sbjct: 179 LPTVQIGNPAGTKVGEPVLAIGSPYGFENTVTAGIVSAKSRSLPDDTYVPFIQTDVAVNP 238 Query: 243 GNSGGPLFDLNGQVIGINSQIYSQTGGFQGLSFSIPIDVAMKVEQQLVTHGKVTRGRLGV 302 GNSGGPLF+ G+VIGINSQIYSQTGG+QGLSF++PIDVAM+VEQQLV GKVTRGRLG+ Sbjct: 239 GNSGGPLFNQRGEVIGINSQIYSQTGGYQGLSFAVPIDVAMRVEQQLVATGKVTRGRLGI 298 Query: 303 SVQDLNQALSESFGLKKAEGALVSSVEKGSPADKAGLQAGDVILSFDGHAIDHSVDLPTL 362 SVQ+++Q+L++SF L K EGALV++VEK PA KAGLQ GDVIL I HS DLP Sbjct: 299 SVQEVDQSLADSFNLPKPEGALVNAVEKDGPAAKAGLQPGDVILQIGDAHIGHSGDLPEQ 358 Query: 363 VADTAPGSSKPIQVMRGGKVLTMNVTVGEMKQAKNEAKPGKSDDQGRLGLAVRPLDKDEQ 422 VA+ PG++ P+Q++R GK T++VTVGE K AK A + D+GRLGLAVRPL +E+ Sbjct: 359 VAEIKPGTNVPLQIIRHGKPTTLSVTVGEAKDAKVAASTSAAPDKGRLGLAVRPLQPEEK 418 Query: 423 AQIGGQKGLLVEDASGPAAVAGIQSGDVILALNGTPVSSVAQLRKLASEAGKNVALLVER 482 Q G GL+V D+SGPAA AGIQ GDVIL+LNGTPVSS +LR L AGK+VALLV+R Sbjct: 419 RQSGLPGGLVVMDSSGPAAKAGIQPGDVILSLNGTPVSSAQELRSLVDRAGKHVALLVQR 478 Query: 483 GDEKIFVPLAL 493 D KIFVPL L Sbjct: 479 DDAKIFVPLDL 489 >emb|CCA87166.1| periplasmic protease; contains two PDZ domain [Ralstonia syzygii R24] Length = 490 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 297/431 (68%), Positives = 351/431 (81%), Gaps = 1/431 (0%) Query: 64 DFSGIVQRYGPAVVNISVTGKARKVADDD-DNGLDPNDPFSEFFKRFGPQLQMPQQPRIM 122 DFSGIV+RYGPAVVNIS T A++ + G++P+DPF+EFFK F PQ+ Q +++ Sbjct: 59 DFSGIVERYGPAVVNISTTAHAQRTSIQGLPPGMNPDDPFAEFFKHFMPQVPQQQGDQVV 118 Query: 123 HGLGSGFIISPDGLILTNAHVVDGAQEVVVKLTDRREFKAKVLGIDKQSDIAVIRIDAKN 182 GLGSGFI+SPDGLILTNAHVVDGAQEV VKLTDRREFKAKVLG+DKQSD+AV+RI A+N Sbjct: 119 KGLGSGFIVSPDGLILTNAHVVDGAQEVSVKLTDRREFKAKVLGVDKQSDVAVLRIAARN 178 Query: 183 LPTVQIGDPSRVKVGQPVLAIGSPYGFDNTATAGIISAKSRSLPDDNYVPFIQTDVAVNP 242 LPTVQIG+P+ KVG+PVLAIGSPYGF+NT TAGI+SAKSRSLPDD YVPFIQTDVAVNP Sbjct: 179 LPTVQIGNPAGTKVGEPVLAIGSPYGFENTVTAGIVSAKSRSLPDDTYVPFIQTDVAVNP 238 Query: 243 GNSGGPLFDLNGQVIGINSQIYSQTGGFQGLSFSIPIDVAMKVEQQLVTHGKVTRGRLGV 302 GNSGGPLF G+VIGINSQIYSQTGG+QGLSF++PIDVAM+VEQQLV GKVTRGRLG+ Sbjct: 239 GNSGGPLFSQRGEVIGINSQIYSQTGGYQGLSFAVPIDVAMRVEQQLVATGKVTRGRLGI 298 Query: 303 SVQDLNQALSESFGLKKAEGALVSSVEKGSPADKAGLQAGDVILSFDGHAIDHSVDLPTL 362 SVQ+++Q+L++SF L K EGALV++VEK PA KAGLQ GDVIL I HS DLP Sbjct: 299 SVQEVDQSLADSFNLPKPEGALVNAVEKDGPAAKAGLQPGDVILQIGDAHIGHSGDLPEQ 358 Query: 363 VADTAPGSSKPIQVMRGGKVLTMNVTVGEMKQAKNEAKPGKSDDQGRLGLAVRPLDKDEQ 422 VA+ PG++ P+Q++R GK T++VTVGE K AK A + D+GRLGLAVRPL +E+ Sbjct: 359 VAEIKPGTNVPLQIIRHGKPTTLSVTVGEAKDAKVAASTSAAPDKGRLGLAVRPLQPEEK 418 Query: 423 AQIGGQKGLLVEDASGPAAVAGIQSGDVILALNGTPVSSVAQLRKLASEAGKNVALLVER 482 Q G GL+V D+SGPAA AGIQ GDVIL+LNGTPVSS +LR L AGK+VALLV+R Sbjct: 419 RQSGLPGGLVVMDSSGPAAKAGIQPGDVILSLNGTPVSSAQELRSLVDRAGKHVALLVQR 478 Query: 483 GDEKIFVPLAL 493 D KIFVPL L Sbjct: 479 DDAKIFVPLDL 489 >emb|CCA82848.1| periplasmic protease; contains two PDZ domain [blood disease bacterium R229] Length = 490 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 295/431 (68%), Positives = 350/431 (81%), Gaps = 1/431 (0%) Query: 64 DFSGIVQRYGPAVVNISVTGKARKVADDD-DNGLDPNDPFSEFFKRFGPQLQMPQQPRIM 122 DFSGIV+RYGPAVVNIS T A++ + G++P+DPF+EFFK F PQ+ Q +++ Sbjct: 59 DFSGIVERYGPAVVNISTTAHAQRTSIQGLPPGMNPDDPFAEFFKHFMPQMPQQQGDQVV 118 Query: 123 HGLGSGFIISPDGLILTNAHVVDGAQEVVVKLTDRREFKAKVLGIDKQSDIAVIRIDAKN 182 GLGSGFI+SPDGLILTNAHVVDGAQEV VKLTDRREFKAKVLG+DKQSD+AV+RI A+N Sbjct: 119 KGLGSGFIVSPDGLILTNAHVVDGAQEVSVKLTDRREFKAKVLGVDKQSDVAVLRIAARN 178 Query: 183 LPTVQIGDPSRVKVGQPVLAIGSPYGFDNTATAGIISAKSRSLPDDNYVPFIQTDVAVNP 242 LPTVQIG+P+ KVG+P LAIGSPYGF+NT TAGI+SAKSRSLPDD YVPFIQTDVAVNP Sbjct: 179 LPTVQIGNPAGTKVGEPALAIGSPYGFENTVTAGIVSAKSRSLPDDTYVPFIQTDVAVNP 238 Query: 243 GNSGGPLFDLNGQVIGINSQIYSQTGGFQGLSFSIPIDVAMKVEQQLVTHGKVTRGRLGV 302 GNSGGPLF+ G+VIGINSQIYSQTGG+QGLSF++PIDVAM+VEQQLV GKVTRGRLG+ Sbjct: 239 GNSGGPLFNQRGEVIGINSQIYSQTGGYQGLSFAVPIDVAMRVEQQLVATGKVTRGRLGI 298 Query: 303 SVQDLNQALSESFGLKKAEGALVSSVEKGSPADKAGLQAGDVILSFDGHAIDHSVDLPTL 362 SVQ+++Q+L++SF L K EGALV++VEK PA KAGLQ GDVIL I HS DLP Sbjct: 299 SVQEVDQSLADSFNLPKPEGALVNAVEKDGPAAKAGLQPGDVILQIGDAHIGHSGDLPEQ 358 Query: 363 VADTAPGSSKPIQVMRGGKVLTMNVTVGEMKQAKNEAKPGKSDDQGRLGLAVRPLDKDEQ 422 VA+ G++ P+Q++R GK T++VTVGE K AK A + D+GRLGLAVRPL +E+ Sbjct: 359 VAEIKSGTNVPLQIIRHGKPTTLSVTVGEAKDAKVAASTSAAPDKGRLGLAVRPLQPEEK 418 Query: 423 AQIGGQKGLLVEDASGPAAVAGIQSGDVILALNGTPVSSVAQLRKLASEAGKNVALLVER 482 Q G GL+V D+SGPAA AGIQ GDVIL+LNGTPVSS +LR L AGK+VALLV+R Sbjct: 419 RQSGLPGGLVVMDSSGPAAKAGIQPGDVILSLNGTPVSSAQELRSLVDRAGKHVALLVQR 478 Query: 483 GDEKIFVPLAL 493 D KIFVPL L Sbjct: 479 DDAKIFVPLDL 489