BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5539.p         (136 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777765.1| transmembrane protein [Herbaspirillum serope...   198   3e-49
ref|YP_004754943.1| hypothetical protein CFU_4299 [Collimonas fu...   129   2e-28
ref|YP_001355263.1| hypothetical protein mma_3573 [Janthinobacte...   115   2e-24
ref|YP_001101574.1| hypothetical protein HEAR3350 [Herminiimonas...   107   8e-22
ref|ZP_08275163.1| hypothetical protein IMCC9480_14 [Oxalobacter...    87   1e-15

>ref|YP_003777765.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65857.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 135

 Score =  198 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 122/136 (89%), Positives = 128/136 (94%), Gaps = 1/136 (0%)

Query: 1   MATPHKEGPAAPAAHAANPGLTAGLLGLAKNLLGLIISRIELASLEMSEIGANLVRFAVI 60
           M  PHKEG  APA  AA+PGLTAGLLGLAKNLLGLIISRIELASLEMSEIGANLVRFAVI
Sbjct: 1   MPNPHKEGQGAPAP-AAHPGLTAGLLGLAKNLLGLIISRIELASLEMSEIGANLVRFAVI 59

Query: 61  FVLAAVALWFAIAFWSVLVVMLAWDTWGWKILALLGFVFSVATVGLVYYARSVLMQGKLS 120
           FVLAAV LWFAIAFWSVL+VMLAWDTWGWKILALLG VF+VATVGLV+YARSVL+QGKLS
Sbjct: 60  FVLAAVGLWFAIAFWSVLIVMLAWDTWGWKILALLGMVFTVATVGLVWYARSVLLQGKLS 119

Query: 121 LPQTMSELRKDRDALL 136
           LPQTM+ELRKDRDALL
Sbjct: 120 LPQTMAELRKDRDALL 135


>ref|YP_004754943.1| hypothetical protein CFU_4299 [Collimonas fungivorans Ter331]
 gb|AEK64120.1| hypothetical protein CFU_4299 [Collimonas fungivorans Ter331]
          Length = 128

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/120 (59%), Positives = 94/120 (78%)

Query: 17  ANPGLTAGLLGLAKNLLGLIISRIELASLEMSEIGANLVRFAVIFVLAAVALWFAIAFWS 76
           ++PGL +GL+G AKN+  L+ISRIELA+LE SEIG++L +  ++  L  VALWFA+AFWS
Sbjct: 9   SSPGLVSGLVGTAKNMFALLISRIELAALEFSEIGSHLFKLFLVCALGIVALWFALAFWS 68

Query: 77  VLVVMLAWDTWGWKILALLGFVFSVATVGLVYYARSVLMQGKLSLPQTMSELRKDRDALL 136
            L+++LAWD  GWKIL +L   F++ T+G  +Y RSVL QG+L LP TM+ELRKDRDALL
Sbjct: 69  GLLLVLAWDALGWKILLILAAFFTIVTIGTGFYVRSVLRQGRLGLPVTMAELRKDRDALL 128


>ref|YP_001355263.1| hypothetical protein mma_3573 [Janthinobacterium sp. Marseille]
 gb|ABR90597.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 130

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/125 (50%), Positives = 90/125 (72%)

Query: 12  PAAHAANPGLTAGLLGLAKNLLGLIISRIELASLEMSEIGANLVRFAVIFVLAAVALWFA 71
           P +    PGL +G + LAKN+ GL++SRIELA+LE++E+ AN ++   +FVL A+   FA
Sbjct: 6   PRSSDFRPGLVSGAVNLAKNMFGLLMSRIELAALELAEVRANALKLVALFVLGAIVALFA 65

Query: 72  IAFWSVLVVMLAWDTWGWKILALLGFVFSVATVGLVYYARSVLMQGKLSLPQTMSELRKD 131
           I +WS L+V L+W T GWKIL +L  +F+   VG++ Y +S+L +GKLS+P TM+ELR D
Sbjct: 66  IGYWSALIVYLSWPTLGWKILLILAIIFTAVAVGILLYVQSLLREGKLSMPATMAELRND 125

Query: 132 RDALL 136
            DALL
Sbjct: 126 HDALL 130


>ref|YP_001101574.1| hypothetical protein HEAR3350 [Herminiimonas arsenicoxydans]
 emb|CAL63453.1| conserved hypothetical protein; putative membrane protein
           [Herminiimonas arsenicoxydans]
          Length = 130

 Score =  107 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 65/127 (51%), Positives = 90/127 (70%), Gaps = 2/127 (1%)

Query: 12  PAAHAAN--PGLTAGLLGLAKNLLGLIISRIELASLEMSEIGANLVRFAVIFVLAAVALW 69
           P+A   N  PGL  G+  LA+N  GL++SRIELA+LE++E+ AN ++ A++F L  V  +
Sbjct: 4   PSARPQNDRPGLIGGVAELARNTFGLLMSRIELAALELAEVRANALKLALLFALGVVIAF 63

Query: 70  FAIAFWSVLVVMLAWDTWGWKILALLGFVFSVATVGLVYYARSVLMQGKLSLPQTMSELR 129
           FAI +W+VL+  L+W   GWKIL +L  VF+V T G+ YY +S++ QGKLS+P TM ELR
Sbjct: 64  FAIGYWTVLIAYLSWPVLGWKILLILALVFTVITGGIFYYLKSLIEQGKLSMPATMEELR 123

Query: 130 KDRDALL 136
            D DALL
Sbjct: 124 NDHDALL 130


>ref|ZP_08275163.1| hypothetical protein IMCC9480_14 [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF31375.1| hypothetical protein IMCC9480_14 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 101

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/101 (49%), Positives = 73/101 (72%)

Query: 36  IISRIELASLEMSEIGANLVRFAVIFVLAAVALWFAIAFWSVLVVMLAWDTWGWKILALL 95
           +++RIELAS+EM+E+ ANL +  ++     +A  FA+AFW+ L+V L+WD  GWKIL ++
Sbjct: 1   MVNRIELASIEMAEVRANLFKLILVAAAGVIAACFALAFWTGLLVFLSWDALGWKILLIV 60

Query: 96  GFVFSVATVGLVYYARSVLMQGKLSLPQTMSELRKDRDALL 136
              F+   VG++ Y RS+L QG LS+P T++ELR DRDALL
Sbjct: 61  AAGFTAIAVGILLYLRSMLKQGMLSMPATLAELRNDRDALL 101