BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5534.p (392 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772075.1| hypothetical protein blr5435 [Bradyrhizobium ja... 295 1e-77 ref|ZP_00518455.1| hypothetical protein CwatDRAFT_0609 [Crocosph... 280 3e-73 ref|ZP_07109969.1| hypothetical protein OSCI_1490005 [Oscillator... 103 6e-20 ref|YP_892727.1| hypothetical protein CFF8240_1594 [Campylobacte... 100 3e-19 ref|ZP_07806548.1| conserved hypothetical protein [Helicobacter ... 76 1e-11 >ref|NP_772075.1| hypothetical protein blr5435 [Bradyrhizobium japonicum USDA 110] dbj|BAC50700.1| blr5435 [Bradyrhizobium japonicum USDA 110] Length = 401 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 162/397 (40%), Positives = 226/397 (56%), Gaps = 12/397 (3%) Query: 3 EKMYEYYAKQDVQPTYADFSSDAELSRYAQLRKNVFF-RLSLPLALFQGKEVLEFGPDTG 61 +K++ YY +QD+ PT+ +F S AEL+ YA R+ +F +L LP LF+ EVLEFGPD+G Sbjct: 4 DKLFNYYERQDILPTFGNFKSSAELTAYAGQRRELFSDKLVLPPRLFRDAEVLEFGPDSG 63 Query: 62 ENSIVFAQWGARVTLVEPNAEAHPYIRQYFSRFSLESNLTEIVTKSVLDFEPARQYDFVD 121 EN++VFA WGA +TL EPN AHP I YF+ F L E+ V F R++D +D Sbjct: 64 ENALVFAGWGANMTLAEPNRHAHPKIEAYFAHFGQAERLRELALSDVEGFRSDRRFDVID 123 Query: 122 AEGFIYTVQPTSAWVSKLHECLKPDGIALVTYVEKYGSFMELLLKAIYQTA-LRHGQSEG 180 AEGFIYTVQP+ W+ H L PDG A+V+Y E+YG F EL LKAI+ + G+S Sbjct: 124 AEGFIYTVQPSEKWLGIFHRLLNPDGYAVVSYYERYGGFFELALKAIHAAGKVLTGRS-- 181 Query: 181 GIETARHLFLPKWNSIAHTRKIESWFMDVIQNPFVRMKYFIDPAQLLREMHAGHFRLYSA 240 +ETA+ LF PKWNSI HTR ESW MDV++NPFVR +YF D L H F ++SA Sbjct: 182 ALETAKLLFEPKWNSIPHTRSFESWLMDVLENPFVRHRYFFDAEALCTAAHEQGFDIHSA 241 Query: 241 WPNYKDVLAMNWIKGEYRAGDDNEAAIAYIEQSRLSHVLSTQCLLPAPS---PTISNQLA 297 WP Y+D L + W K A + A ++++SRLS + + L + IS + Sbjct: 242 WPAYRDSLDVYWHKKVLSADEKLRRATRHLDRSRLSFLGGRKLYLVGKADAVSAISASIE 301 Query: 298 ELVGIVDGLIDNASETNCLRAVAILDELIAFLDAGNIIASPEDAAKARTILTMIKT---A 354 LV VD +ID + R + L L + +I+A +DA+ I + + Sbjct: 302 ALVLDVDRMIDEPFGDSLPRVITSLASLRETILTTDILA--DDASDIEAITATLDSFHRI 359 Query: 355 MTLMGQGKVAELTTFCREDSVFIATWGMPNHHGVFQK 391 + +G+ + + + D FI TWG P H V +K Sbjct: 360 FSAIGRRDASAIAALTQSDQAFINTWGQPAHFLVVRK 396 >ref|ZP_00518455.1| hypothetical protein CwatDRAFT_0609 [Crocosphaera watsonii WH 8501] gb|EAM48458.1| hypothetical protein CwatDRAFT_0609 [Crocosphaera watsonii WH 8501] Length = 403 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 147/396 (37%), Positives = 229/396 (57%), Gaps = 9/396 (2%) Query: 3 EKMYEYYAKQDVQPTYADFSSDAELSRYAQLRKNVFF-RLSLPLALFQGKEVLEFGPDTG 61 +K++ YY ++ PT+A F + +L +Y R +F +L LP LF+G ++LEFGPD+G Sbjct: 7 DKLFLYYEREKTLPTFARFKTVEDLDKYESQRARIFTEKLKLPTQLFKGIKLLEFGPDSG 66 Query: 62 ENSIVFAQWGARVTLVEPNAEAHPYIRQYFSRFSLESNLTEIVTKSVLDFEPARQYDFVD 121 ENS+ FA+WGA +TLVEPN++AH I+ Y F L+ L +V + + F ++Y F+D Sbjct: 67 ENSLAFARWGASLTLVEPNSDAHVPIKNYLENFGLKDKLDVLVEEEISKFTSQKKYQFID 126 Query: 122 AEGFIYTVQPTSAWVSKLHECLKPDGIALVTYVEKYGSFMELLLKAIY-QTALRHGQSEG 180 AEGFIYT +P S W++ + L G L+ Y E G F+EL+LK I+ +T G S Sbjct: 127 AEGFIYTFRPESIWLNLFKDLLDDQGFCLINYYEASGGFLELILKLIHAKTKTLRGLSPE 186 Query: 181 GIETARHLFLPKWNSIAHTRKIESWFMDVIQNPFVRMKYFIDPAQLLREMHAGHFRLYSA 240 E A LF KWNSI HTR +SW MDV++NPFVR +YF D ++L +++ + +YS+ Sbjct: 187 --ENAWQLFESKWNSIPHTRSFKSWVMDVLENPFVRYEYFFDASELCQQLFDYGYSVYSS 244 Query: 241 WPNYKDVLAMNWIKGEYRAGDDNEAAIAYIEQSRLSHVLSTQCLLPAPSP----TISNQL 296 WPNY+D L++ W K + + + YI +SRL +L + L S I++ Sbjct: 245 WPNYQDTLSIYWHKMQLSEAEKLNNNLDYIARSRLGFLLGKKLFLTVQSSEKVKEINDYA 304 Query: 297 AELVGIVDGLIDNASETNCLRAVAILDELIAFLDAGNIIA-SPEDAAKARTILTMIKTAM 355 +L +VD ID+ +A L+ + L ++A S +D +A ++ ++T M Sbjct: 305 HQLTRVVDHAIDDLDSDKIWQAYHYLEPIKNILIGDTVLANSIQDKQEAIKLVETLQTVM 364 Query: 356 TLMGQGKVAELTTFCREDSVFIATWGMPNHHGVFQK 391 L+ + ++ FC + +FI +WG+P H VFQK Sbjct: 365 QLLTKNDSDDIEQFCNTNPLFIKSWGIPYHFIVFQK 400 >ref|ZP_07109969.1| hypothetical protein OSCI_1490005 [Oscillatoria sp. PCC 6506] emb|CBN55119.1| hypothetical protein OSCI_1490005 [Oscillatoria sp. PCC 6506] Length = 330 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 77/340 (22%), Positives = 152/340 (44%), Gaps = 25/340 (7%) Query: 65 IVFAQWGARVTLVEPNAEAHPYIRQYFSRFSLESNLTEIVTKSVLDFEPARQYDFVDAEG 124 +V A GA +TLVEPN + P ++ F +F + ++ +VT+ + FE YD V AEG Sbjct: 1 MVLACVGANLTLVEPNHQVLPQLKALFQKFGVTEHIAALVTEGIDIFESDITYDIVLAEG 60 Query: 125 FIYTVQPTSAWVSKLHECLKPDGIALVTYVEKYGSFMELLLKAI----YQ-TALRHGQSE 179 F++T+ V K+ + LKP G+A++++ ++YG +E+ + + YQ + + S+ Sbjct: 61 FLFTLPNRDEMVQKIGQLLKPGGLAVISFNDRYGCLLEMTRRMVVWRAYQLQGIDNVHSQ 120 Query: 180 GGIETARHLFLPKWNSIAHTRKIESWFMDVIQNPFVRMKYFIDPAQLLREMHAGHFRLYS 239 + A L+ ++ + +R E+W+ D + NPF+ KY +L+ + YS Sbjct: 121 VALNIAEKLYAEDFSKLKASRSFEAWWKDTLINPFLASKYHWSYPELIPLLEQIGCEFYS 180 Query: 240 AWPNYKDVLAMNWIKGEYRAGDDNEAAIAYIEQSRLSHVLSTQCLLP------APSPTIS 293 + P + + W K D +E E R+ L P + SP + Sbjct: 181 SSPKWTGIDRFTWYKN---VSDSSERHQQLTENLRMYLPFFLTGLPPSAGEKSSASPAVI 237 Query: 294 NQLAELV-GIVDGLIDNASETNCLRAVAILDELIAFLDAGNIIASPEDAAKARTILTMIK 352 + L L+ + D ++ + + +LDE ++ + ++ + +K Sbjct: 238 DSLTNLIEQLSDYTVNWGTPIEAIIYPPLLDEYLSQI----------QDSRLQQFNREMK 287 Query: 353 TAMTLMGQGKVAELTTFCREDSVFIATWGMPNHHGVFQKL 392 + ++ +L + + + WG P H+ F K+ Sbjct: 288 NIYEAVKYNQLEQLISVYQASKCVRSMWGAPYHYICFSKM 327 >ref|YP_892727.1| hypothetical protein CFF8240_1594 [Campylobacter fetus subsp. fetus 82-40] gb|ABK82378.1| hypothetical protein CFF8240_1594 [Campylobacter fetus subsp. fetus 82-40] Length = 248 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 120/230 (52%), Gaps = 19/230 (8%) Query: 1 MTEKMYEYYAKQDVQPTYADFSSDAELSRYAQLRKNVFFRLSLPLALFQGKEVLEFGPDT 60 M + ++Y + ++ P D S +++ + + R N++ L + LF+ ++VLE GP + Sbjct: 1 MENEFTQFYKEHNISPVSQDLS---DINLHLKRRANLYQMLGIDKRLFKNRDVLEVGPGS 57 Query: 61 GENSIVFAQWGARVTLVEPNAEAHPYIRQYFS--RFSLESNLTEIVTKSVLDFEPARQYD 118 G NSI F +WGA + LVEPN + I Q + +F L + E +F +++YD Sbjct: 58 GFNSICFCKWGANLDLVEPNDKGRKEISQNLNGYKFRLYDDFIE-------NFVSSKKYD 110 Query: 119 FVDAEGFIYTVQPTSAWVSKLHECLKPDGIALVTYVEKYGSFMELLLKAIYQTALRHGQS 178 FV AEGF+ ++ + +S L + +K DGI + T ++++ F E L + +R+ + Sbjct: 111 FVIAEGFLPSLNNSKDILSSLIKLVKKDGILVTTCIDEFSHFYEDLRRITGFILIRNLEY 170 Query: 179 -EGGIETARHLFLPKWNSIAH-TRKIESWFMDVIQNP-----FVRMKYFI 221 + ++ F +S+ +R IE W DV+ NP F+ +K +I Sbjct: 171 FDERVKILCKAFKSHLSSLKFASRPIEDWVSDVVLNPVNDNKFLSIKNYI 220 >ref|ZP_07806548.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gb|EFR47003.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 406 Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 53/216 (24%), Positives = 105/216 (48%), Gaps = 7/216 (3%) Query: 7 EYYAKQDVQPTYADFSSDAELSRYAQLRKNVFFRLSLPLALFQGKEVLEFGPDTGENSIV 66 ++Y + + P D S + R+ RK ++ +++ F+G +LE G +G N+++ Sbjct: 6 KFYGEHHISPVSQDIS---DFERHLARRKRLYELVNIHPFAFRGARMLEVGAGSGYNTLL 62 Query: 67 FAQWGARVTLVEPNAEAHPYIRQYFSRFSLESNLTEIVTKSVLDFEPARQYDFVDAEGFI 126 F + GA V +VEPNA + + F+ + + +I ++ ++ A +YDF+ AEGF+ Sbjct: 63 FLKLGAIVDIVEPNAAGREQMIKLFTEYKIPQEQYKIHPCTIESYDSAERYDFIIAEGFL 122 Query: 127 YTV--QPTSAWVSKLHECLKPDGIALVTYVEKYGSFMELLLKAIYQTALRH-GQSEGGIE 183 V + +++L K D +VT ++ F+E L + + +R + + +E Sbjct: 123 PWVDKKQRKGIITQLWRYAKKDAGIVVTTQCEFSFFLEDLRRILGLVLVRRVSEFKQKVE 182 Query: 184 TARHLFLPKWNSIAH-TRKIESWFMDVIQNPFVRMK 218 F+ ++ +R I W +D I NP +K Sbjct: 183 MLSKAFVSHLQTLGFASRPIADWVIDNILNPAADVK 218