BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5515.p (328 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_560922.1| hypothetical protein Bxe_A0057 [Burkholderia xe... 188 1e-45 ref|YP_004475965.1| hypothetical protein Psefu_3915 [Pseudomonas... 179 8e-43 ref|YP_003523237.1| glycosyl transferase family 2 [Sideroxydans ... 173 4e-41 ref|YP_294998.1| hypothetical protein Reut_A0774 [Ralstonia eutr... 169 5e-40 ref|YP_001155401.1| hypothetical protein Pnuc_0619 [Polynucleoba... 162 6e-38 >ref|YP_560922.1| hypothetical protein Bxe_A0057 [Burkholderia xenovorans LB400] gb|ABE32870.1| hypothetical protein Bxe_A0057 [Burkholderia xenovorans LB400] Length = 267 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 107/266 (40%), Positives = 152/266 (57%), Gaps = 19/266 (7%) Query: 7 ILQIHYDEASRRMLDPGFTPLEIVGNPRPDWREYWGIRNYFLNTALNEDDYYGFLSPLFF 66 I QI Y E +RR LD GF PL N RPDW EYW IRNY ++ L+ D YYGFLSP F Sbjct: 6 IYQIFYSEQTRRNLDAGFIPLN-NSNRRPDWCEYWPIRNYLIDEPLDSDTYYGFLSPKFR 64 Query: 67 DKTRMNAQQVHAFMDSRPGA--DVYTFSPSMSDASAYLSVFEQGARRH----PGIVPVAQ 120 KT + A VH F++ A D+ TFSP A+ + ++F QGA H P V A+ Sbjct: 65 SKTGLMAADVHQFLNDSADAAPDIVTFSPFFDAAALFPNIFLQGADSHSEVWPAFVESAR 124 Query: 121 ALMADIGLDVNLQSLINNFRSTAYCNYIIAKPVFWDKWFAINEHMFALAEAHATPLARKL 180 L+ I LD +L+ + +T +CNY +AKP FW W + E +F +AE TP A+ L Sbjct: 125 LLVPGIDLD----TLVMDSTNTVFCNYFLAKPPFWRHWLSKAERIFQIAEQSNTPFAQAL 180 Query: 181 NEVTDYGKSTVQMKVFIMERIGSLVMALMPELQVTNLNIAAMRFGDPLFYPCRD----EM 236 N+ T++ +KVF++ER+ SL++A P+ +V + N + PL YP D ++ Sbjct: 181 NQTTNHSSGPTAVKVFVIERLLSLILATEPQWRVKSFNPMCL----PLNYPGADRIGEQL 236 Query: 237 VMLDALKTAYLHSADQAYLDRFHALR 262 +MLDALK A + + Y+ F +L+ Sbjct: 237 IMLDALKMAAVATGRSEYMQVFASLK 262 >ref|YP_004475965.1| hypothetical protein Psefu_3915 [Pseudomonas fulva 12-X] gb|AEF23871.1| hypothetical protein Psefu_3915 [Pseudomonas fulva 12-X] Length = 272 Score = 179 bits (453), Expect = 8e-43, Method: Composition-based stats. Identities = 101/262 (38%), Positives = 143/262 (54%), Gaps = 3/262 (1%) Query: 6 HILQIHYDEASRRMLDPGFTPLEIVGNPRPDWREYWGIRNYFLNTALNEDDYYGFLSPLF 65 H+ I Y +A+ + GF L+ + + R DWREYW IR + L L+E+ +YGF SP F Sbjct: 11 HLFHIAYSDATLEGMPAGFELLDNMAHERDDWREYWPIRRFLLEQPLDEEAWYGFFSPRF 70 Query: 66 FDKTRMNAQQVHAFMDSRP--GADVYTFSPSMSDASAYLSVFEQGARRHPGIVPVAQALM 123 +K ++A V F+ + GADV TFSP + +L+VFEQ HPG + ++QA + Sbjct: 71 KEKIGLDALHVREFVQAAAATGADVCTFSPQPDMGAFFLNVFEQEDLFHPGFLDISQAFV 130 Query: 124 ADIGLDVNLQSLINNFRSTAYCNYIIAKPVFWDKWFAINEHMFALAEAHATPLARKLNEV 183 +GLDV L+ L+ + R + NYI+A+P FW +W A+NE +FAL E LA L Sbjct: 131 RHVGLDVALRQLVMDSRQIVFSNYIVARPAFWRRWLALNEQLFALCEQGEGELADGLRRE 190 Query: 184 TDYGKSTVQMKVFIMERIGSLVMALMPELQVTNLNIAAMRFGDPLFYPCRDEMVMLDALK 243 + Y S V KVF+MER+ SL++ L P +V N + + E V+ DALK Sbjct: 191 SSYPGS-VPCKVFLMERLASLILTLEPNWRVRAYNTFDCAWSASRLNQFKLEAVLSDALK 249 Query: 244 TAYLHSADQAYLDRFHALRHDL 265 A Y D F ALR L Sbjct: 250 IAMREQGFAQYRDAFAALRDKL 271 >ref|YP_003523237.1| glycosyl transferase family 2 [Sideroxydans lithotrophicus ES-1] gb|ADE10850.1| glycosyl transferase family 2 [Sideroxydans lithotrophicus ES-1] Length = 803 Score = 173 bits (438), Expect = 4e-41, Method: Composition-based stats. Identities = 90/261 (34%), Positives = 145/261 (55%), Gaps = 2/261 (0%) Query: 7 ILQIHYDEASRRMLDPGFTPLEIVGNPRPDWREYWGIRNYFLNTALNEDDYYGFLSPLFF 66 I QI YD +R ++DP F PL+ + N RPDW EYW IR L+ + ++D Y GF SP FF Sbjct: 539 IFQIFYDANTRSLVDPSFIPLDNIENARPDWCEYWSIRKVLLSQSFSDDTYLGFFSPRFF 598 Query: 67 DKTRMNAQQVHAFMDSRPGADVYTFSPSMSDASAYLSVFEQGARRHPGIVPVAQALMADI 126 +KT M+ QV F+ + ADV +FSP + + S F G HPG++ Q ++ + Sbjct: 599 EKTAMSGSQVLEFVRNS-SADVISFSPYFDQGALHPSPFYHGESHHPGLLKTTQNVLTLL 657 Query: 127 GLDVNLQSLINNFRSTAYCNYIIAKPVFWDKWFAINEHMFALAEAHATPLARKLNEVTDY 186 ++++L +LI + +T + NY +A+ FW KWFA E +F + E L L ++T + Sbjct: 658 NVNLDLNALICDQTTTIFSNYFVARYSFWKKWFAYAEKIFNVCEGPDCELKHSLVDLTQH 717 Query: 187 -GKSTVQMKVFIMERIGSLVMALMPELQVTNLNIAAMRFGDPLFYPCRDEMVMLDALKTA 245 S+ MKVFI+ER+ ++VMA ++I P D++++ DALK+ Sbjct: 718 RNSSSYAMKVFILERLVTIVMAEQRIRSEVAIDIRKAPLSFPQSRAILDKLMVCDALKSQ 777 Query: 246 YLHSADQAYLDRFHALRHDLL 266 +L + +++ + R+ LL Sbjct: 778 FLQTGLPPFIETYVLYRNKLL 798 >ref|YP_294998.1| hypothetical protein Reut_A0774 [Ralstonia eutropha JMP134] gb|AAZ60154.1| hypothetical protein Reut_A0774 [Ralstonia eutropha JMP134] Length = 287 Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 101/263 (38%), Positives = 137/263 (52%), Gaps = 3/263 (1%) Query: 6 HILQIHYDEASRRMLDPGFTPLEIVGNPRPDWREYWGIRNYFLNTALNEDDYYGFLSPLF 65 + QI Y EA + LDPG+ PL +G+ R DWREYW +R + L L +D YYGF SP F Sbjct: 27 QLYQIAYSEAVLQRLDPGYLPLINMGHDRHDWREYWPMRKFLLENELADDCYYGFFSPRF 86 Query: 66 FDKTRMNAQQVHAFMDSRPG-ADVYTFSPSMSDASAYLSVFEQGARRHPGIVPVAQALMA 124 +KT + V F++S P DV TFSP + +L+VFEQ PG + +QA + Sbjct: 87 LEKTGLGHADVVRFIESCPADTDVVTFSPQPDMGAFFLNVFEQEELFEPGFLRASQAFLE 146 Query: 125 DIGLDVNLQSLINNFRSTAYCNYIIAKPVFWDKWFAINEHMFALAEAHATPLARKLNEVT 184 G+ +L LI + R + NY AKP FW W A+NE +FA+ E + L L T Sbjct: 147 FAGVQADLAGLIMDSRQIVFSNYFAAKPPFWRAWLALNEQLFAICEGEDSELKSALTFAT 206 Query: 185 DYGKSTVQMKVFIMERIGSLVMALMPELQVTNLNIAAMRFGDPLFYPCRDEMVMLDALKT 244 Y VQ KVF+MERI SL++ L P +V + A + + + V+ DALK Sbjct: 207 PY-PGQVQRKVFLMERIASLLLTLNPAWRVKAYSTFACAWSATRLGQFKLDAVLSDALKI 265 Query: 245 AYLHSADQAYLDRFHALRHDLLR 267 A Y F +R D LR Sbjct: 266 AMREQGFGDYTSAFAQVR-DRLR 287 >ref|YP_001155401.1| hypothetical protein Pnuc_0619 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gb|ABP33837.1| conserved hypothetical protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 270 Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats. Identities = 90/266 (33%), Positives = 136/266 (51%), Gaps = 1/266 (0%) Query: 4 NKHILQIHYDEASRRMLDPGFTPLEIVGNPRPDWREYWGIRNYFLNTALNEDDYYGFLSP 63 N I QI YD +++ LDP F PL+ + N RPDWREYW +RNY LN AL+E+ +YGF SP Sbjct: 3 NAQIFQIFYDAQTKKSLDPDFLPLDNLENSRPDWREYWPMRNYLLNNALDENCFYGFFSP 62 Query: 64 LFFDKTRMNAQQVHAFM-DSRPGADVYTFSPSMSDASAYLSVFEQGARRHPGIVPVAQAL 122 F +KT ++A +F+ + DV TFSP + + + F Q HP Sbjct: 63 KFKEKTGLSANDCLSFIGQQKSDLDVITFSPLFDLGAWFRNSFLQAISLHPNSTESIIGA 122 Query: 123 MADIGLDVNLQSLINNFRSTAYCNYIIAKPVFWDKWFAINEHMFALAEAHATPLARKLNE 182 + + +N+ L+ + + +CN+ +AKP FW W E ++A AE + + +A LN Sbjct: 123 LHVLNPYININELVMHSGNNIFCNFFVAKPAFWKAWLENCELIWAEAEFNMSSIAHGLNS 182 Query: 183 VTDYGKSTVQMKVFIMERIGSLVMALMPELQVTNLNIAAMRFGDPLFYPCRDEMVMLDAL 242 + S +K F++ERI SL++A +V N + F R ++ LDAL Sbjct: 183 LAQGHDSPAPIKTFVIERIASLMLATNDSWKVRAYNSLDLPFSSAPIANERAALIQLDAL 242 Query: 243 KTAYLHSADQAYLDRFHALRHDLLRR 268 K AY YL L +L++ Sbjct: 243 KIAYADQKRAEYLSLHKTLGDLVLKK 268