BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5512.p (226 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_01452777.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Maripro... 238 4e-61 ref|YP_578007.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrobact... 221 9e-56 ref|YP_004051234.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Caldit... 217 1e-54 ref|ZP_08715469.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Mycobac... 214 6e-54 gb|EFV84265.1| DTDP-6-deoxy-L-mannose-dehydrogenase [Achromobact... 214 7e-54 >ref|ZP_01452777.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Mariprofundus ferrooxydans PV-1] gb|EAU54377.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Mariprofundus ferrooxydans PV-1] Length = 183 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 109/183 (59%), Positives = 140/183 (76%) Query: 44 LQITPTGIAGAVVVSSVRRGDARGSFARWFCDEELAPVLQGSRIVQVNNSFTAEPGSVRG 103 + + PT IAG V ++R D RG+FAR+FC+ ELAPVL IVQ+N+S T++PG++RG Sbjct: 1 MNLLPTKIAGVQVAETIRIADQRGAFARFFCENELAPVLGERHIVQINHSRTSQPGALRG 60 Query: 104 MHFQHAPHAEKKLIRCLAGRVFDVVLDLRKGSPTFLQWRGVELAAGDDRALLVPEGCAHG 163 MH+QHAPHAE K++RC+ GRV+DV +DLR+ SPTFLQW GVEL+A +D +++PEGCAHG Sbjct: 61 MHYQHAPHAEMKMVRCIKGRVWDVAVDLRRDSPTFLQWHGVELSAENDLMMVIPEGCAHG 120 Query: 164 FQVLEAGSSLLYLHTAPYVPHAEGGVRHDDPRVAIAWPLPPQNLSPRDLQHPLLAPDFDG 223 FQVLEA S LLYLHTA Y P EGG+RHDDP + IAWPL ++S RD HPLL + G Sbjct: 121 FQVLEAESELLYLHTARYTPTCEGGMRHDDPLIDIAWPLAVTDISDRDRSHPLLDEHYSG 180 Query: 224 IPL 226 + L Sbjct: 181 VKL 183 >ref|YP_578007.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrobacter hamburgensis X14] gb|ABE63547.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrobacter hamburgensis X14] Length = 183 Score = 221 bits (562), Expect = 9e-56, Method: Composition-based stats. Identities = 107/183 (58%), Positives = 129/183 (70%) Query: 44 LQITPTGIAGAVVVSSVRRGDARGSFARWFCDEELAPVLQGSRIVQVNNSFTAEPGSVRG 103 ++++ T I+G V S+ GDARG F+R FC+ ELA + I Q N S TA G++RG Sbjct: 1 MKLSQTPISGLFVTESLALGDARGKFSRIFCERELAAAVGARTIRQANVSSTAVVGAIRG 60 Query: 104 MHFQHAPHAEKKLIRCLAGRVFDVVLDLRKGSPTFLQWRGVELAAGDDRALLVPEGCAHG 163 MH+QHAP AE K++RC+ GRVFDV +DLR+GSPTFL W G EL+ + A ++PEGCAHG Sbjct: 61 MHYQHAPRAEMKIVRCIQGRVFDVAVDLRRGSPTFLHWHGAELSQENGMAFIIPEGCAHG 120 Query: 164 FQVLEAGSSLLYLHTAPYVPHAEGGVRHDDPRVAIAWPLPPQNLSPRDLQHPLLAPDFDG 223 FQVLE SSLLY HT Y P E GVRHDDPRVAIAWPLPP NLS RD HP L F G Sbjct: 121 FQVLEPNSSLLYFHTEFYSPEHEAGVRHDDPRVAIAWPLPPTNLSVRDASHPPLDESFQG 180 Query: 224 IPL 226 + L Sbjct: 181 VSL 183 >ref|YP_004051234.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Calditerrivibrio nitroreducens DSM 19672] gb|ADR19071.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Calditerrivibrio nitroreducens DSM 19672] Length = 187 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 104/183 (56%), Positives = 126/183 (68%) Query: 44 LQITPTGIAGAVVVSSVRRGDARGSFARWFCDEELAPVLQGSRIVQVNNSFTAEPGSVRG 103 L I T I G +V + D RG+F R +C+ ELA ++ RIVQ+N+S T + G+VRG Sbjct: 5 LTIQQTYIEGLKIVETASYIDTRGAFTRLYCECELAEIIGSRRIVQINHSCTQQVGTVRG 64 Query: 104 MHFQHAPHAEKKLIRCLAGRVFDVVLDLRKGSPTFLQWRGVELAAGDDRALLVPEGCAHG 163 +HFQ+ PHAE KL+RCL GRV+DV +DLR SPTFL W EL + R +++PEG AHG Sbjct: 65 LHFQYPPHAEMKLVRCLRGRVWDVAVDLRANSPTFLHWHAEELTPENGRMIIIPEGFAHG 124 Query: 164 FQVLEAGSSLLYLHTAPYVPHAEGGVRHDDPRVAIAWPLPPQNLSPRDLQHPLLAPDFDG 223 FQVLEA S LLYLHTA Y P AE G R+DDP + I WPLP LSPRD HPLL PDF G Sbjct: 125 FQVLEAASELLYLHTAYYAPSAEAGFRYDDPCLGIKWPLPVSELSPRDANHPLLKPDFSG 184 Query: 224 IPL 226 I L Sbjct: 185 IAL 187 >ref|ZP_08715469.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Mycobacterium colombiense CECT 3035] gb|EGT87698.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Mycobacterium colombiense CECT 3035] Length = 183 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 110/183 (60%), Positives = 133/183 (72%) Query: 44 LQITPTGIAGAVVVSSVRRGDARGSFARWFCDEELAPVLQGSRIVQVNNSFTAEPGSVRG 103 + I T +AG VV S DARG+F R FC +EL V+ +I Q+N+S T+ G+VRG Sbjct: 1 MNIIDTPLAGLKVVQSSPHRDARGAFLRLFCAQELRAVVGQRQIAQINHSRTSNVGAVRG 60 Query: 104 MHFQHAPHAEKKLIRCLAGRVFDVVLDLRKGSPTFLQWRGVELAAGDDRALLVPEGCAHG 163 +HFQH PHAE K+IRCL GRV+DV +DLR SPTFL+W ELA D + L++PEG AHG Sbjct: 61 LHFQHPPHAEMKMIRCLRGRVWDVAVDLRAESPTFLRWYAQELAQEDAQMLVIPEGFAHG 120 Query: 164 FQVLEAGSSLLYLHTAPYVPHAEGGVRHDDPRVAIAWPLPPQNLSPRDLQHPLLAPDFDG 223 FQVLE S LLYLHTA Y P AEGG+R+DDPR+AIAWPL PQ+LSPRD HPLL DF G Sbjct: 121 FQVLEPESELLYLHTALYHPPAEGGLRYDDPRLAIAWPLQPQDLSPRDQAHPLLNADFTG 180 Query: 224 IPL 226 + L Sbjct: 181 VTL 183 >gb|EFV84265.1| DTDP-6-deoxy-L-mannose-dehydrogenase [Achromobacter xylosoxidans C54] Length = 183 Score = 214 bits (545), Expect = 7e-54, Method: Composition-based stats. Identities = 110/183 (60%), Positives = 131/183 (71%), Gaps = 2/183 (1%) Query: 42 MNLQITPTGIAGAVVVSSVRRGDARGSFARWFCDEELAPVLQGSRIVQVNNSFTAEPGSV 101 MN++ TP IAGAVVV + D RG+F R FC + L+ V+ +IVQ+N S T G+V Sbjct: 1 MNVRSTP--IAGAVVVETRPHQDTRGAFTRLFCADALSAVIGSRQIVQINQSRTLHAGAV 58 Query: 102 RGMHFQHAPHAEKKLIRCLAGRVFDVVLDLRKGSPTFLQWRGVELAAGDDRALLVPEGCA 161 RGMHFQ PHAE KL+RC+ GRV+DVV+DLR GSPTFL+W EL A R L++PEGCA Sbjct: 59 RGMHFQRPPHAEMKLVRCIRGRVWDVVVDLRAGSPTFLRWHAQELDAESARMLVIPEGCA 118 Query: 162 HGFQVLEAGSSLLYLHTAPYVPHAEGGVRHDDPRVAIAWPLPPQNLSPRDLQHPLLAPDF 221 HGFQVLEA S LLYLHTA Y P+AE GVRHDDPR+ I WPL +LS RD H L+ DF Sbjct: 119 HGFQVLEANSELLYLHTAYYTPYAEAGVRHDDPRLGIRWPLAATDLSSRDQAHAPLSDDF 178 Query: 222 DGI 224 GI Sbjct: 179 AGI 181