BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5508.p (316 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_06846045.1| dTDP-4-dehydrorhamnose reductase [Burkholderi... 277 1e-72 ref|ZP_02889836.1| dTDP-4-dehydrorhamnose reductase [Burkholderi... 276 2e-72 ref|YP_620277.1| dTDP-4-dehydrorhamnose reductase [Burkholderia ... 271 9e-71 ref|YP_001764145.1| dTDP-4-dehydrorhamnose reductase [Burkholder... 270 2e-70 ref|ZP_03587380.1| dTDP-4-dehydrorhamnose reductase [Burkholderi... 270 3e-70 >ref|ZP_06846045.1| dTDP-4-dehydrorhamnose reductase [Burkholderia sp. Ch1-1] gb|EFG66321.1| dTDP-4-dehydrorhamnose reductase [Burkholderia sp. Ch1-1] Length = 299 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 148/297 (49%), Positives = 191/297 (64%), Gaps = 11/297 (3%) Query: 6 ILLTGSSGQVGSEFLRRLRAMPAGLDVIAPVRGQLDLTDADALRTAVREARPDLIIHPAA 65 ILLTG +GQVG E R L+ + V+A R +D++D D +R VR RP LI++PAA Sbjct: 10 ILLTGVNGQVGFELARTLQGLGT---VVAVDRAAMDMSDPDRVRAVVRNIRPALIVNPAA 66 Query: 66 YTAVVKAESEPELARRINTDAPALLAQEAARLGAALIHFSTDYVFDGQHPGAYTEDMPTH 125 YTAV KAE E +LA RIN + P +LA+EA +LGAAL+H+STDYVF+G+ Y ED PT Sbjct: 67 YTAVDKAEEELDLAMRINGEMPGVLAEEAKKLGAALVHYSTDYVFNGEKDCPYVEDDPTD 126 Query: 126 PLNVYGASKRDGELAIAASGAAHWILRTSWVYNRTGNNFMKTAIRLAQQKESYTIVGDQF 185 P NVYG +K GE AIAASG AH I RTSWVY G NF+ T +RL ++E ++V DQ Sbjct: 127 PQNVYGRTKLAGEQAIAASGCAHLIFRTSWVYGTRGKNFLLTMLRLGAEREELSVVADQI 186 Query: 186 GAPTWASTIAAVCCRMLAGAEGGREK-VAATSGIYHLTAQGATSWHGYAQLVARELMARG 244 GAPTW++TIA + +LA A GG + +SG+YHLTA GATSWHG+AQ + Sbjct: 187 GAPTWSNTIATLTSNVLAQAVGGSDDWWKQSSGVYHLTASGATSWHGFAQAIFDN----- 241 Query: 245 VPVRLKGLDQITPVPTSSYPTPPERPLNSRLDCSKLEQRFGITLPAWDEDATACLQQ 301 +L + P+P +SYPTP RP NSR+ KL FG+ P WDE C+ + Sbjct: 242 --SKLPKKPTVKPIPAASYPTPAARPANSRMSSDKLFSTFGVRAPKWDEALLLCMAE 296 >ref|ZP_02889836.1| dTDP-4-dehydrorhamnose reductase [Burkholderia ambifaria IOP40-10] gb|EDT04593.1| dTDP-4-dehydrorhamnose reductase [Burkholderia ambifaria IOP40-10] Length = 300 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 147/300 (49%), Positives = 192/300 (64%), Gaps = 15/300 (5%) Query: 6 ILLTGSSGQVGSEFLRRLRAMPAGLDVIAPV-RGQLDLTDADALRTAVREARPDLIIHPA 64 IL+TG +GQVG E LR L+ GL + P R LDL+D D +R VR+ +P LI++PA Sbjct: 12 ILVTGVNGQVGFELLRSLQ----GLGRVVPCDRSTLDLSDLDRVRAFVRDLKPSLIVNPA 67 Query: 65 AYTAVVKAESEPELARRINTDAPALLAQEAARLGAALIHFSTDYVFDGQHPGAYTEDMPT 124 AYTAV KAE+E + ARR+N D P + A+E AR G ALIH+STDYVFDG GAYTE Sbjct: 68 AYTAVDKAETEVDAARRLNADVPRIFAEELARTGGALIHYSTDYVFDGTKAGAYTETDAP 127 Query: 125 HPLNVYGASKRDGELAIAASGAAHWILRTSWVYNRTGNNFMKTAIRLAQQKESYTIVGDQ 184 +P+N YGA+K +GE AIAA+G AH ILRTSWVY R G NF+ T ++L +++ +V DQ Sbjct: 128 NPVNAYGATKLEGEQAIAATGCAHLILRTSWVYGRRGKNFLLTMLKLGKERPELRVVADQ 187 Query: 185 FGAPTWASTIAAVCCRMLAGAEGGREKVAAT---SGIYHLTAQGATSWHGYAQLVARELM 241 GAPTWA TIA V ++A + SG+YH T+ GATSWHG+AQ + M Sbjct: 188 VGAPTWARTIAVVTSHIIAQQAAADDVADWWAKRSGVYHFTSSGATSWHGFAQAILEHAM 247 Query: 242 ARGVPVRLKGLDQITPVPTSSYPTPPERPLNSRLDCSKLEQRFGITLPAWDEDATACLQQ 301 P ++ P+P S YP P +RP NSR+ KL + FG+T+PAWD+ CL + Sbjct: 248 GELAP-------KVLPIPASEYPVPAKRPANSRMALEKLARTFGVTMPAWDDALRLCLGE 300 >ref|YP_620277.1| dTDP-4-dehydrorhamnose reductase [Burkholderia cenocepacia AU 1054] ref|YP_834520.1| dTDP-4-dehydrorhamnose reductase [Burkholderia cenocepacia HI2424] gb|ABF75304.1| dTDP-4-dehydrorhamnose reductase [Burkholderia cenocepacia AU 1054] gb|ABK07627.1| dTDP-4-dehydrorhamnose reductase [Burkholderia cenocepacia HI2424] Length = 299 Score = 271 bits (693), Expect = 9e-71, Method: Composition-based stats. Identities = 144/298 (48%), Positives = 192/298 (64%), Gaps = 12/298 (4%) Query: 6 ILLTGSSGQVGSEFLRRLRAMPAGLDVIAPVRGQLDLTDADALRTAVREARPDLIIHPAA 65 IL+TG +GQVG E LR L+ + V+A R LDL+D D +R+ VRE +P +I++PAA Sbjct: 12 ILVTGVNGQVGFELLRSLQGLGR---VVACDRSMLDLSDLDRVRSVVRELKPSIIVNPAA 68 Query: 66 YTAVVKAESEPELARRINTDAPALLAQEAARLGAALIHFSTDYVFDGQHPGAYTEDMPTH 125 YTAV KAE++ + ARR+N + P A+EAARLGAAL+H+STDYVFDG GAY E T+ Sbjct: 69 YTAVDKAETDVDAARRLNVEVPRAFAEEAARLGAALVHYSTDYVFDGTKEGAYVETDATN 128 Query: 126 PLNVYGASKRDGELAIAASGAAHWILRTSWVYNRTGNNFMKTAIRLAQQKESYTIVGDQF 185 P NVYG +K +GE AIAA+G AH ILRTSWVY R G NF+ T ++L ++ +V DQ Sbjct: 129 PQNVYGLTKLEGEQAIAATGCAHLILRTSWVYGRRGKNFLLTMLKLGSERPELRVVADQV 188 Query: 186 GAPTWASTIAAVCCRMLAGAEGGREKVAAT--SGIYHLTAQGATSWHGYAQLVARELMAR 243 GAPTW+ TIA ++A A + SG+YH T+ GATSWHG+A+ + + M Sbjct: 189 GAPTWSKTIATATAHIVAQALAADDADWWAQRSGVYHFTSAGATSWHGFAEAIFAQAMGE 248 Query: 244 GVPVRLKGLDQITPVPTSSYPTPPERPLNSRLDCSKLEQRFGITLPAWDEDATACLQQ 301 P ++ P+P S YP P +RP NSRL KL + FG+ LP W + T CL + Sbjct: 249 RAP-------RVLPIPASDYPVPAKRPSNSRLSHDKLTEAFGLRLPDWADALTLCLSE 299 >ref|YP_001764145.1| dTDP-4-dehydrorhamnose reductase [Burkholderia cenocepacia MC0-3] gb|ACA90023.1| dTDP-4-dehydrorhamnose reductase [Burkholderia cenocepacia MC0-3] Length = 294 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 144/298 (48%), Positives = 192/298 (64%), Gaps = 12/298 (4%) Query: 6 ILLTGSSGQVGSEFLRRLRAMPAGLDVIAPVRGQLDLTDADALRTAVREARPDLIIHPAA 65 IL+TG +GQVG E LR L+ + V+A R LDL+D D +R+ VRE +P +I++PAA Sbjct: 7 ILVTGVNGQVGFELLRSLQGLGR---VVACDRSMLDLSDLDRVRSVVRELKPSIIVNPAA 63 Query: 66 YTAVVKAESEPELARRINTDAPALLAQEAARLGAALIHFSTDYVFDGQHPGAYTEDMPTH 125 YTAV KAE++ + ARR+N + P A+EAARLGAAL+H+STDYVFDG GAY E T+ Sbjct: 64 YTAVDKAETDVDAARRLNAEVPRAFAEEAARLGAALVHYSTDYVFDGTKEGAYVETDATN 123 Query: 126 PLNVYGASKRDGELAIAASGAAHWILRTSWVYNRTGNNFMKTAIRLAQQKESYTIVGDQF 185 P NVYG +K +GE AIAA+G AH ILRTSWVY R G NF+ T ++L ++ +V DQ Sbjct: 124 PQNVYGLTKLEGEQAIAATGCAHLILRTSWVYGRRGKNFLLTMLKLGSERPELRVVADQV 183 Query: 186 GAPTWASTIAAVCCRMLAGAEGGREKVAAT--SGIYHLTAQGATSWHGYAQLVARELMAR 243 GAPTW+ TIA ++A A + SG+YH T+ GATSWHG+A+ + + M Sbjct: 184 GAPTWSKTIATATAHIVAQALAADDADWWAQRSGVYHFTSAGATSWHGFAEAIFAQAMGE 243 Query: 244 GVPVRLKGLDQITPVPTSSYPTPPERPLNSRLDCSKLEQRFGITLPAWDEDATACLQQ 301 P ++ P+P S YP P +RP NSRL KL + FG+ LP W + T CL + Sbjct: 244 RAP-------RVLPIPASDYPVPAKRPSNSRLSHDKLTEAFGLRLPDWADALTLCLSE 294 >ref|ZP_03587380.1| dTDP-4-dehydrorhamnose reductase [Burkholderia multivorans CGD1] gb|EED98141.1| dTDP-4-dehydrorhamnose reductase [Burkholderia multivorans CGD1] Length = 303 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 145/303 (47%), Positives = 195/303 (64%), Gaps = 13/303 (4%) Query: 6 ILLTGSSGQVGSEFLRRLRAMPAGLDVIAPVRGQLDLTDADALRTAVREARPDLIIHPAA 65 ILLTG +GQVG E R L+ + +V+A R +LDL+ D +R VR+ +PDLI++PAA Sbjct: 9 ILLTGINGQVGFELQRTLQGLG---NVVALDRSRLDLSRLDQVRDVVRDLKPDLIVNPAA 65 Query: 66 YTAVVKAESEPELARRINTDAPALLAQEAARLGAALIHFSTDYVFDGQHPGAYTEDMPTH 125 YTAV +AE++ +A R+N +APA+LA+EA R+GAALIH+STDYVF G G Y ED P Sbjct: 66 YTAVDQAETDVAMATRLNAEAPAVLAEEAKRIGAALIHYSTDYVFSGTKEGPYVEDDPVD 125 Query: 126 PLNVYGASKRDGELAIAASGAAHWILRTSWVYNRTGNNFMKTAIRLAQQKESYTIVGDQF 185 P NVYG +K DGE AIAASG AH I RTSWVY G NF+ T +RL +++ +V DQ Sbjct: 126 PQNVYGRTKLDGERAIAASGCAHLIFRTSWVYGTRGKNFLLTMLRLGAERDELNVVADQI 185 Query: 186 GAPTWASTIAAVCCRMLAGAEGG---REKVAATSGIYHLTAQGATSWHGYAQLVARELMA 242 GAPTW++TIA + ++A A E A SGIYHL A G+TSWHG+A+ + R Sbjct: 186 GAPTWSNTIATLTAHVVAQAISAPMRDEWWHAHSGIYHLCAAGSTSWHGFAEAIFRLADL 245 Query: 243 RGVPVRLKGLDQITPVPTSSYPTPPERPLNSRLDCSKLEQRFGITLPAWDEDATACLQQI 302 P + P+P S+YPTP +RP NS++ +KL + FG+ P W+ C+ Q Sbjct: 246 PKKPA-------VMPIPASAYPTPAKRPANSQMSNAKLAEHFGLHAPHWEAALALCMMQT 298 Query: 303 IDH 305 + H Sbjct: 299 VRH 301