BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5504.p (273 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777744.1| F0F1-type ATP synthase subunit a [Herbaspiri... 465 e-129 ref|YP_001355323.1| F0F1 ATP synthase subunit A [Janthinobacteri... 387 e-106 ref|YP_001101633.1| F0F1 ATP synthase subunit A [Herminiimonas a... 377 e-102 ref|YP_004755042.1| ATP synthase subunit A [Collimonas fungivora... 368 e-100 ref|YP_002229194.1| F0F1 ATP synthase subunit A [Burkholderia ce... 350 2e-94 >ref|YP_003777744.1| F0F1-type ATP synthase subunit a [Herbaspirillum seropedicae SmR1] gb|ADJ65836.1| F0F1-type ATP synthase, subunit a protein [Herbaspirillum seropedicae SmR1] Length = 273 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 272/273 (99%), Positives = 272/273 (99%) Query: 1 MTVEAAEHAPTASEYIVHHLGHLSTQHQTKIVDFSILNVDTIFWSVFCGVIACFFMFLAA 60 MTVEAAEHAPTASEYIVHHLGHLSTQHQTKIVDFSILNVDTIFWSVFCGVIAC FMFLAA Sbjct: 1 MTVEAAEHAPTASEYIVHHLGHLSTQHQTKIVDFSILNVDTIFWSVFCGVIACLFMFLAA 60 Query: 61 RKATSGVPGRFQAFVEMVVEMVEDQSKAIVHGDRTFIAPVALTVFVWVALMNSLDFLPVD 120 RKATSGVPGRFQAFVEMVVEMVEDQSKAIVHGDRTFIAPVALTVFVWVALMNSLDFLPVD Sbjct: 61 RKATSGVPGRFQAFVEMVVEMVEDQSKAIVHGDRTFIAPVALTVFVWVALMNSLDFLPVD 120 Query: 121 LASGILGLFGLGEMHHRIVPTADLNGTLGIALGVLALMLYYSVKIKGAGGFIHELFAAPF 180 LASGILGLFGLGEMHHRIVPTADLNGTLGIALGVLALMLYYSVKIKGAGGFIHELFAAPF Sbjct: 121 LASGILGLFGLGEMHHRIVPTADLNGTLGIALGVLALMLYYSVKIKGAGGFIHELFAAPF 180 Query: 181 GIWLAPFNLLLNIIEFAAKTVSLGMRLFGNMYAGELLFLLIALLGSTATAFGFIGHVIAG 240 GIWLAPFNLLLNIIEFAAKTVSLGMRLFGNMYAGELLFLLIALLGSTATAFGFIGHVIAG Sbjct: 181 GIWLAPFNLLLNIIEFAAKTVSLGMRLFGNMYAGELLFLLIALLGSTATAFGFIGHVIAG 240 Query: 241 SIWAIFHILIVLLQAFIFMMLTLVYLGQAHEAH 273 SIWAIFHILIVLLQAFIFMMLTLVYLGQAHEAH Sbjct: 241 SIWAIFHILIVLLQAFIFMMLTLVYLGQAHEAH 273 >ref|YP_001355323.1| F0F1 ATP synthase subunit A [Janthinobacterium sp. Marseille] sp|A6T476|ATP6_JANMA RecName: Full=ATP synthase subunit a; AltName: Full=ATP synthase F0 sector subunit a; AltName: Full=F-ATPase subunit 6 gb|ABR89125.1| F-type H+-transporting ATPase a chain [Janthinobacterium sp. Marseille] Length = 273 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 219/267 (82%), Positives = 246/267 (92%), Gaps = 2/267 (0%) Query: 9 APTASEYIVHHLGHLSTQHQTKIVDFSILNVDTIFWSVFCGVIACFFMFLAARKATSGVP 68 APTASEYIVHHLGH ST+HQ KIVDFSI+N+DTIFWS+F GV+ C FM+LAARKATSGVP Sbjct: 7 APTASEYIVHHLGHFSTKHQDKIVDFSIINMDTIFWSIFAGVVGCLFMYLAARKATSGVP 66 Query: 69 GRFQAFVEMVVEMVEDQSKAIVHGDRTFIAPVALTVFVWVALMNSLDFLPVDLASGILGL 128 GRFQA VEM+VEMV++Q+K+IVHGDRTFIAP+ALTVFVWVALMNSLDFLPVD+ S Sbjct: 67 GRFQAAVEMIVEMVDNQAKSIVHGDRTFIAPLALTVFVWVALMNSLDFLPVDMFSAFFHA 126 Query: 129 FGLGEM--HHRIVPTADLNGTLGIALGVLALMLYYSVKIKGAGGFIHELFAAPFGIWLAP 186 GL + HHR+VPTADLNGT+GIALGV ALM++Y++KIKGAGGF+HELFAAPFGIWLAP Sbjct: 127 VGLDSLITHHRVVPTADLNGTMGIALGVFALMIFYNIKIKGAGGFVHELFAAPFGIWLAP 186 Query: 187 FNLLLNIIEFAAKTVSLGMRLFGNMYAGELLFLLIALLGSTATAFGFIGHVIAGSIWAIF 246 FNLLLN+IEFAAKTVSL MRLFGNMYAGELLFLLIALLGSTATAFGF GHV+AG++WAIF Sbjct: 187 FNLLLNMIEFAAKTVSLAMRLFGNMYAGELLFLLIALLGSTATAFGFFGHVVAGTLWAIF 246 Query: 247 HILIVLLQAFIFMMLTLVYLGQAHEAH 273 HILIV LQAFIFMMLTLVY+GQAHE+H Sbjct: 247 HILIVFLQAFIFMMLTLVYIGQAHESH 273 >ref|YP_001101633.1| F0F1 ATP synthase subunit A [Herminiimonas arsenicoxydans] emb|CAL63512.1| ATP synthase F0, A chain [Herminiimonas arsenicoxydans] Length = 281 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 214/263 (81%), Positives = 241/263 (91%), Gaps = 2/263 (0%) Query: 13 SEYIVHHLGHLSTQHQTKIVDFSILNVDTIFWSVFCGVIACFFMFLAARKATSGVPGRFQ 72 SEYIVHHLGH ST+HQ KIVDFSI+N+DTIFWSVF GV+ CFFM+LAARKATSGVPGRFQ Sbjct: 19 SEYIVHHLGHFSTKHQDKIVDFSIINMDTIFWSVFAGVVGCFFMWLAARKATSGVPGRFQ 78 Query: 73 AFVEMVVEMVEDQSKAIVHGDRTFIAPVALTVFVWVALMNSLDFLPVDLASGILGLFGLG 132 A VEMVVEMV++Q+K+IVHGDR+FIAP+ALTVFVWVALMNSLDFLPVD+ S + G+ Sbjct: 79 AAVEMVVEMVDNQAKSIVHGDRSFIAPLALTVFVWVALMNSLDFLPVDMFSALFQAVGID 138 Query: 133 EM--HHRIVPTADLNGTLGIALGVLALMLYYSVKIKGAGGFIHELFAAPFGIWLAPFNLL 190 + +HR VPTADLNGT+GIALGV ALM++Y++KIKGAGGF+ ELFAAPFGIWLAPFNLL Sbjct: 139 HIIPYHRAVPTADLNGTMGIALGVFALMIFYNIKIKGAGGFVRELFAAPFGIWLAPFNLL 198 Query: 191 LNIIEFAAKTVSLGMRLFGNMYAGELLFLLIALLGSTATAFGFIGHVIAGSIWAIFHILI 250 LN+IEFAAKTVSL MRLFGNMYAGELLFLLIALLGSTATAFGF GHV+AG++WAIFHILI Sbjct: 199 LNMIEFAAKTVSLAMRLFGNMYAGELLFLLIALLGSTATAFGFFGHVLAGTLWAIFHILI 258 Query: 251 VLLQAFIFMMLTLVYLGQAHEAH 273 V LQAFIFMMLTLVY+GQAHE H Sbjct: 259 VFLQAFIFMMLTLVYIGQAHEGH 281 >ref|YP_004755042.1| ATP synthase subunit A [Collimonas fungivorans Ter331] gb|AEK64219.1| ATP synthase A chain [Collimonas fungivorans Ter331] Length = 274 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 226/275 (82%), Positives = 247/275 (89%), Gaps = 3/275 (1%) Query: 1 MTVEAAEHAPTASEYIVHHLGHLSTQHQTKIVDFSILNVDTIFWSVFCGVIACFFMFLAA 60 MTV A+ A T SEYIVHHLGH ST HQ+KIVDFSI+N+DTIFWSVF GV+ C M+LAA Sbjct: 1 MTV-ASSDALTPSEYIVHHLGHFSTGHQSKIVDFSIINIDTIFWSVFAGVVGCLLMYLAA 59 Query: 61 RKATSGVPGRFQAFVEMVVEMVEDQSKAIVHGDRTFIAPVALTVFVWVALMNSLDFLPVD 120 RKAT+GVPGRFQAFVEMVVEMV+DQ+K IVHGDR+FIAP+ALTVF+WVALMNSLDFLPVD Sbjct: 60 RKATAGVPGRFQAFVEMVVEMVDDQAKGIVHGDRSFIAPLALTVFIWVALMNSLDFLPVD 119 Query: 121 LASGILGLFGLGEM--HHRIVPTADLNGTLGIALGVLALMLYYSVKIKGAGGFIHELFAA 178 L S + GL + HHR+VPTADLNGT+GIALGVL LMLYYS KIKG GGF+HEL AA Sbjct: 120 LFSTFFKMVGLDGLISHHRVVPTADLNGTMGIALGVLVLMLYYSFKIKGFGGFLHELVAA 179 Query: 179 PFGIWLAPFNLLLNIIEFAAKTVSLGMRLFGNMYAGELLFLLIALLGSTATAFGFIGHVI 238 PFGIWLAP NLLLN+IEFAAKTVSL MRLFGNMYAGELLFLLIALLGSTATAFGF+GHV+ Sbjct: 180 PFGIWLAPANLLLNLIEFAAKTVSLAMRLFGNMYAGELLFLLIALLGSTATAFGFVGHVV 239 Query: 239 AGSIWAIFHILIVLLQAFIFMMLTLVYLGQAHEAH 273 AGSIWAIFHILIVLLQAFIFMMLTLVY+GQAHEAH Sbjct: 240 AGSIWAIFHILIVLLQAFIFMMLTLVYIGQAHEAH 274 >ref|YP_002229194.1| F0F1 ATP synthase subunit A [Burkholderia cenocepacia J2315] emb|CAR50336.1| ATP synthase A chain [Burkholderia cenocepacia J2315] Length = 283 Score = 350 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 202/285 (70%), Positives = 229/285 (80%), Gaps = 14/285 (4%) Query: 1 MTVEAAEHAPTASEYIVHHLGHLSTQHQTKIVDFSILNVDTIFWSVFCGVIACFFMFLAA 60 M P SEYI HHL + ST HQT I D + N+DT+FWS+ CG++ + LAA Sbjct: 1 MAASEGTRGPDPSEYIAHHLQNFSTSHQTSIFDIHVWNLDTLFWSIVCGIVTIVLLRLAA 60 Query: 61 RKATSGVPGRFQAFVEMVVEMVEDQSKAIVHGDRTFIAPVALTVFVWVALMNSLDFLPVD 120 RKATSGVPGRFQ +EM+VEMVEDQSKAIVHG+RTFIAP+ALTVFVWVALMNSLDFLPVD Sbjct: 61 RKATSGVPGRFQCAIEMLVEMVEDQSKAIVHGNRTFIAPLALTVFVWVALMNSLDFLPVD 120 Query: 121 LASGILGLFGLGEM--HHRIVPTADLNGTLGIALGVLALMLYYSVKIKGAGGFIHELFAA 178 L ++GL GL ++ HHRIVPTADLNGTLGIALGV LM+YYS+KIKGAGGF+HEL +A Sbjct: 121 LPGRVIGLLGLSDVISHHRIVPTADLNGTLGIALGVFVLMIYYSIKIKGAGGFVHELLSA 180 Query: 179 PFG----IWLAPFNLLLNIIEFAAKTVSLGMRLFGNMYAGELLFLLIALLGST------A 228 PFG +W+ NL LNI+E+ AKTVSLGMRLFGNMYAGELLFLLIALLGS A Sbjct: 181 PFGAHPLLWIP--NLALNIVEYLAKTVSLGMRLFGNMYAGELLFLLIALLGSMWSFGGDA 238 Query: 229 TAFGFIGHVIAGSIWAIFHILIVLLQAFIFMMLTLVYLGQAHEAH 273 T GF+GHVIAGS+WAIFHILIVLLQAFIFMMLTLVYLGQAH+ H Sbjct: 239 TFLGFVGHVIAGSVWAIFHILIVLLQAFIFMMLTLVYLGQAHDKH 283