BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5466.p         (229 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_755766.1| peptidoglycan binding domain-containing protein...    58   9e-07
ref|YP_003226196.1| Sel1 domain-containing protein repeat-contai...    57   3e-06
gb|AEH62538.1| Sel1 domain protein repeat-containing protein [Zy...    57   3e-06
ref|ZP_08134352.1| TPR repeat protein [Kingella denitrificans AT...    56   4e-06
ref|YP_001679450.1| hypothetical protein HM1_1135 [Heliobacteriu...    56   4e-06

>ref|YP_755766.1| peptidoglycan binding domain-containing protein [Maricaulis maris
           MCS10]
 gb|ABI64828.1| Peptidoglycan-binding domain 1 protein [Maricaulis maris MCS10]
          Length = 1072

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 9/129 (6%)

Query: 61  DCSDASQK--LLEAEVQQGNPKAQYLLGTQLLTGQCGRKDSDEGVKLETKSAESGYPPAI 118
           D  DA+    LL    +QG P AQY  G  L TG+    + ++  +   ++A +G+  A+
Sbjct: 829 DAGDAATAAILLRRAAEQGVPAAQYRFGKLLETGEGVEINLEDARRWTERAANAGHRRAM 888

Query: 119 HILGVILR----KERSIQEAVPFFLGAAQKGFRLAEVDLAFAY--GEGSPIKNLPLSYAW 172
           H LGV+        ++++ A  +F  AA  G R ++ +LA  Y  G+G P+ +LP ++AW
Sbjct: 889 HNLGVMYYYGSGAAQNMETAARWFQEAALLGLRDSQFNLALLYETGDGVPL-SLPDAFAW 947

Query: 173 FSVAESHEE 181
           FS+A S  +
Sbjct: 948 FSIAASDSD 956


>ref|YP_003226196.1| Sel1 domain-containing protein repeat-containing protein [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gb|ACV75612.1| Sel1 domain protein repeat-containing protein [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 274

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 10/146 (6%)

Query: 36  KMKIYPAIFFLLLFLSNCAHAQLPRDCSDASQKL---LEAEVQQGNPKAQYLLGTQLLTG 92
           K   + A+F  L F++N   AQ  +     + K    LE + + GNPKAQ  LGT    G
Sbjct: 3   KFLFFTAVF--LPFVANPVQAQTAKSTKVVAGKTALSLEQKARAGNPKAQTDLGTAYYNG 60

Query: 93  QCGRKDSDEGVKLETKSAESGYPPAIHILGVILRK----ERSIQEAVPFFLGAAQKGFRL 148
           Q   +D  + +    K+A  GYP A + LG    +     +S ++AV ++  AA +G   
Sbjct: 61  QGMAQDYKQAISWYQKAANQGYPLAQYYLGNACLQGIGVTQSDEQAVSWYQKAANQGLAE 120

Query: 149 AEVDLAFAYGEGSPI-KNLPLSYAWF 173
           A+  LA AY  G  + +N   +  WF
Sbjct: 121 AQYSLAIAYYTGRGVTQNYGQASFWF 146


>gb|AEH62538.1| Sel1 domain protein repeat-containing protein [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 274

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 10/146 (6%)

Query: 36  KMKIYPAIFFLLLFLSNCAHAQLPRDCSDASQKL---LEAEVQQGNPKAQYLLGTQLLTG 92
           K   + A+F  L F++N   AQ  +     + K    LE + + GNPKAQ  LGT    G
Sbjct: 3   KFLFFTAVF--LPFVANPVQAQTAKSTKVVAGKTALSLEQKARAGNPKAQTDLGTAYYNG 60

Query: 93  QCGRKDSDEGVKLETKSAESGYPPAIHILGVILRK----ERSIQEAVPFFLGAAQKGFRL 148
           Q   +D  + +    K+A  GYP A + LG    +     +S ++AV ++  AA +G   
Sbjct: 61  QGMAQDYKQAISWYQKAANQGYPLAQYYLGNACLQGIGLTQSDEQAVSWYQKAANQGLAE 120

Query: 149 AEVDLAFAYGEGSPI-KNLPLSYAWF 173
           A+  LA AY  G  + +N   +  WF
Sbjct: 121 AQYSLAIAYYTGRGVTQNYGQASFWF 146


>ref|ZP_08134352.1| TPR repeat protein [Kingella denitrificans ATCC 33394]
 gb|EGC16486.1| TPR repeat protein [Kingella denitrificans ATCC 33394]
          Length = 380

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 10/163 (6%)

Query: 10  GVSSAMTSSWRVRVRNRRE----FKQSRKFKMKIYPAIFFLLLFLSNCAHAQLPRDCSDA 65
           G+ S    + R     +R      K  ++ KMK    +   +L       A    D S++
Sbjct: 3   GIKSVFQMARRFPAHTKRPSISVLKTIKRIKMKHLTKLLAAVLSALGLNQAAWTNDVSNS 62

Query: 66  SQKLLEAEVQQGNPKAQYLLGTQLLTGQCGRKDSDEGVKLETKSAESGYPPAIHILGVIL 125
            + L  AE  +GN +AQ+ LG     GQ  R+D  E VK    +AE GY PA   LGV+ 
Sbjct: 63  RETLQLAE--RGNAQAQFNLGMMYENGQGVRQDDAEAVKWYRLAAEQGYAPAQSNLGVMY 120

Query: 126 RKERSIQ----EAVPFFLGAAQKGFRLAEVDLAFAYGEGSPIK 164
              + ++    EAV ++  AA +G   A+ +L   Y  G  ++
Sbjct: 121 ENGQGVRQDDAEAVKWYQQAAAQGLAEAQSNLGVMYYNGRGVR 163


>ref|YP_001679450.1| hypothetical protein HM1_1135 [Heliobacterium modesticaldum Ice1]
 gb|ABZ83439.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
          Length = 232

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 7/119 (5%)

Query: 70  LEAEVQQGNPKAQYLLGTQLLTGQCGRKDSDEGVKLETKSAESGYPPAIHILGVILRKER 129
           L  E Q+G+  AQY LGT L++G    KD+DEG+K   ++AE G   A + LGV+     
Sbjct: 62  LRNEAQKGDTSAQYKLGTVLISGDGVTKDADEGLKWLLQAAERGDARAQNNLGVLYFTGN 121

Query: 130 SI----QEAVPFFLGAAQKGFRLAEVDLAFAY--GEGSPIKNLPLSYAWFSVAESHEEK 182
            +    +EAV +F  AA++G+   +  L +AY  G G P+ +   +  W  +A     K
Sbjct: 122 GLPANGEEAVKWFRKAAEQGYDKGQYHLGYAYLNGVGVPL-DAKEALKWMQLAAEQGNK 179