BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5462.p (217 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777719.1| hypothetical protein Hsero_4343 [Herbaspiril... 376 e-102 ref|YP_550422.1| peptidase S16, lon-like protein [Polaromonas sp... 233 1e-59 ref|YP_004619948.1| hypothetical protein Rta_28260 [Ramlibacter ... 215 4e-54 ref|YP_983269.1| peptidase S16, lon domain-containing protein [P... 214 5e-54 ref|YP_523087.1| peptidase S16, lon-like protein [Rhodoferax fer... 214 9e-54 >ref|YP_003777719.1| hypothetical protein Hsero_4343 [Herbaspirillum seropedicae SmR1] gb|ADJ65811.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 193/206 (93%), Positives = 200/206 (97%) Query: 12 ISAQTIPLFPLASTLFPEGRLPLQIFEVRYLDMIGKCIAEGSSFGVVALTEGSEVRRPGQ 71 ISAQTIPLFPLASTLFPEGRLPLQIFEVRYLDMIGKCIAEGSSFGVVALT+G+EVRRPGQ Sbjct: 12 ISAQTIPLFPLASTLFPEGRLPLQIFEVRYLDMIGKCIAEGSSFGVVALTQGAEVRRPGQ 71 Query: 72 SERFVGVGTLARIQEWSTPSPGLMRIACLGSERFRIVQAEQQKHGLWTAQVEMMEADRAV 131 SERFVGVGTLA IQEWSTPSPGLMRIACLG ERFRIVQAEQQKHGLWTAQV+MME DR V Sbjct: 72 SERFVGVGTLAHIQEWSTPSPGLMRIACLGGERFRIVQAEQQKHGLWTAQVDMMEGDRVV 131 Query: 132 TIPEELRNTSQALDNLLQSVLRQGLPDSEVPIAAPYRLDDCGWVANRWAEMMPISVNLKQ 191 +IPEEL NT+QAL+NLLQSVLRQGLPDSEVPIAAPYRLDDCGWVANRWAEMMPISV LKQ Sbjct: 132 SIPEELGNTAQALENLLQSVLRQGLPDSEVPIAAPYRLDDCGWVANRWAEMMPISVELKQ 191 Query: 192 SLLALDNPLLRLELVQDALDELGWLK 217 SLLALDNP+LRLELVQDALDELGWLK Sbjct: 192 SLLALDNPVLRLELVQDALDELGWLK 217 >ref|YP_550422.1| peptidase S16, lon-like protein [Polaromonas sp. JS666] gb|ABE45524.1| peptidase S16, lon-like protein [Polaromonas sp. JS666] Length = 229 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 117/212 (55%), Positives = 151/212 (71%), Gaps = 9/212 (4%) Query: 12 ISAQTIPLFPLASTLFPEGRLPLQIFEVRYLDMIGKCIAEGSSFGVVALTEGSEVRRPGQ 71 ++ ++PLFPL + L+P G LPL+IFEVRYLDMIGKC G+ FGVV+LTEGSEVRRPG Sbjct: 15 LTLTSLPLFPLGTVLYPGGLLPLRIFEVRYLDMIGKCHKAGAPFGVVSLTEGSEVRRPGH 74 Query: 72 SE---------RFVGVGTLARIQEWSTPSPGLMRIACLGSERFRIVQAEQQKHGLWTAQV 122 +E F VGTLA I E++ P GLM I C+G++RF I +E+ KHGLW A V Sbjct: 75 AEPSGDGFAHEAFSTVGTLATITEFAAPQAGLMVIRCIGTQRFTISSSEKMKHGLWIANV 134 Query: 123 EMMEADRAVTIPEELRNTSQALDNLLQSVLRQGLPDSEVPIAAPYRLDDCGWVANRWAEM 182 + D AV IPE+L++T+ AL L+Q++ +G+P ++P+ APYRL DCGWVANRW E+ Sbjct: 135 TRQDDDIAVKIPEDLQDTADALGKLIQTLQSRGVPAGQMPVLAPYRLQDCGWVANRWCEL 194 Query: 183 MPISVNLKQSLLALDNPLLRLELVQDALDELG 214 +PI + LKQ L+ LDNPLLRLELV D L G Sbjct: 195 LPIPLELKQRLMELDNPLLRLELVGDILGRTG 226 >ref|YP_004619948.1| hypothetical protein Rta_28260 [Ramlibacter tataouinensis TTB310] gb|AEG93929.1| conserved hypothetical protein [Ramlibacter tataouinensis TTB310] Length = 218 Score = 215 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 110/210 (52%), Positives = 146/210 (69%), Gaps = 1/210 (0%) Query: 6 ATPRPP-ISAQTIPLFPLASTLFPEGRLPLQIFEVRYLDMIGKCIAEGSSFGVVALTEGS 64 +P P ++ Q++PLFPL + LFP G LPL+IFEVRYLDMIG+C G+ FGVV+LT+G Sbjct: 7 GSPVPAALTLQSLPLFPLGTVLFPGGLLPLRIFEVRYLDMIGRCHKAGAPFGVVSLTQGQ 66 Query: 65 EVRRPGQSERFVGVGTLARIQEWSTPSPGLMRIACLGSERFRIVQAEQQKHGLWTAQVEM 124 EVR+PG E F VGTLA I TP PGLM I G+ RFRI ++Q KHGLW A VE Sbjct: 67 EVRQPGSREAFATVGTLATISALETPRPGLMMIRASGTRRFRITASDQLKHGLWVADVES 126 Query: 125 MEADRAVTIPEELRNTSQALDNLLQSVLRQGLPDSEVPIAAPYRLDDCGWVANRWAEMMP 184 + D +V +P +L+ T+ AL +++S+ + ++PI P+RL DCGWVANRW E++P Sbjct: 127 LGDDLSVPVPPDLQGTADALGKVIRSLQEKAESADQLPIQGPWRLQDCGWVANRWCELLP 186 Query: 185 ISVNLKQSLLALDNPLLRLELVQDALDELG 214 + V LKQ ++ LDNPL+RLELV D L +G Sbjct: 187 LPVALKQRMMELDNPLVRLELVSDVLARMG 216 >ref|YP_983269.1| peptidase S16, lon domain-containing protein [Polaromonas naphthalenivorans CJ2] gb|ABM38348.1| peptidase S16, lon domain protein [Polaromonas naphthalenivorans CJ2] Length = 234 Score = 214 bits (546), Expect = 5e-54, Method: Composition-based stats. Identities = 112/224 (50%), Positives = 144/224 (64%), Gaps = 14/224 (6%) Query: 5 PATPRPPISAQTIPLFPLASTLFPEGRLPLQIFEVRYLDMIGKCIAEGSSFGVVALTEGS 64 P ++ ++PLFPL + L+P G LPLQIFEVRYLDMIGKC G+ FGVV+LTEGS Sbjct: 8 PEAMSEALTLTSLPLFPLGTVLYPGGLLPLQIFEVRYLDMIGKCHKTGAPFGVVSLTEGS 67 Query: 65 EVRRPGQ--------------SERFVGVGTLARIQEWSTPSPGLMRIACLGSERFRIVQA 110 EVR+P E F VGTLA+I E+S P PGLM + C G RF I + Sbjct: 68 EVRKPANVAPKGALPGGDGFAHEAFNAVGTLAKIIEFSVPQPGLMVVLCQGIHRFTITRR 127 Query: 111 EQQKHGLWTAQVEMMEADRAVTIPEELRNTSQALDNLLQSVLRQGLPDSEVPIAAPYRLD 170 E+ KHGLW A V ME D V IP +L+ +++AL L++ +L P ++P+ PY LD Sbjct: 128 EKLKHGLWIADVVRMEDDLPVRIPHDLQKSAEALGKLIKGLLHGDTPPEKMPMQPPYHLD 187 Query: 171 DCGWVANRWAEMMPISVNLKQSLLALDNPLLRLELVQDALDELG 214 DC WVANRW E++P+ + +KQ L+ LDNPLLRLELV D L+ G Sbjct: 188 DCSWVANRWCELLPMPLAVKQRLMELDNPLLRLELVCDILERNG 231 >ref|YP_523087.1| peptidase S16, lon-like protein [Rhodoferax ferrireducens T118] gb|ABD69556.1| peptidase S16, lon-like [Rhodoferax ferrireducens T118] Length = 230 Score = 214 bits (544), Expect = 9e-54, Method: Composition-based stats. Identities = 109/208 (52%), Positives = 142/208 (68%), Gaps = 9/208 (4%) Query: 16 TIPLFPLASTLFPEGRLPLQIFEVRYLDMIGKCIAEGSSFGVVALTEGSEVRRPGQS--- 72 ++PLFPL++ L+P G LPL+IFEVRYLDMIGKC G+ FGVVALT G+EVR+P Sbjct: 20 SLPLFPLSTVLYPGGTLPLRIFEVRYLDMIGKCHKTGAPFGVVALTTGAEVRKPDNGSPT 79 Query: 73 ------ERFVGVGTLARIQEWSTPSPGLMRIACLGSERFRIVQAEQQKHGLWTAQVEMME 126 E F VGTLA I E+S P GLM I C G +RFRI E+ KHGLW A V + Sbjct: 80 GDGFAPEVFHAVGTLASITEFSHPQSGLMMIRCTGMQRFRITHQERLKHGLWVADVSPLA 139 Query: 127 ADRAVTIPEELRNTSQALDNLLQSVLRQGLPDSEVPIAAPYRLDDCGWVANRWAEMMPIS 186 D V IP++L+ + AL NL+ ++L + LP +++P+ PY+LDDC WVANRW E++P+ Sbjct: 140 NDLTVKIPDDLQGVATALGNLINTLLARALPLAQMPVQPPYQLDDCAWVANRWCELLPMP 199 Query: 187 VNLKQSLLALDNPLLRLELVQDALDELG 214 + KQ L+ LDNPL+RLELV D L+ G Sbjct: 200 LEHKQRLMELDNPLVRLELVSDLLERSG 227