BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5458.p         (166 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777711.1| tRNA modification (thiophene/furan oxidation...   202   1e-50
ref|YP_004755091.1| GTPase and tRNA-U34 5-formylation enzyme Trm...   188   2e-46
ref|YP_001101690.1| tRNA modification GTPase TrmE [Herminiimonas...   180   5e-44
ref|YP_001355383.1| tRNA modification GTPase TrmE [Janthinobacte...   177   3e-43
ref|YP_585751.1| tRNA modification GTPase TrmE [Cupriavidus meta...   160   5e-38

>ref|YP_003777711.1| tRNA modification (thiophene/furan oxidation) GTPase
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ65803.1| tRNA modification (thiophene/furan oxidation) GTPase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 479

 Score =  202 bits (514), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 100/117 (85%), Positives = 109/117 (93%), Gaps = 2/117 (1%)

Query: 41  KYSQMTFDSSPIAAIATAPGRGGIGVVRLSGKNLWPVVQAICGKDESSLAPRHASYLPFK 100
           K +QMTFDSSPIAAIATAPGRGGIGVVRLSGKNL PV+QA+CG+  +SLAPRHA+YLPF 
Sbjct: 10  KQTQMTFDSSPIAAIATAPGRGGIGVVRLSGKNLAPVIQAVCGR--ASLAPRHATYLPFL 67

Query: 101 RADGSAIDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARCLEAGVDIGLRLA 157
             DGSAIDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARC++AG +IGLRLA
Sbjct: 68  NEDGSAIDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARCVQAGSEIGLRLA 124


>ref|YP_004755091.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Collimonas
           fungivorans Ter331]
 gb|AEK64268.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Collimonas
           fungivorans Ter331]
          Length = 465

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 90/113 (79%), Positives = 101/113 (89%)

Query: 45  MTFDSSPIAAIATAPGRGGIGVVRLSGKNLWPVVQAICGKDESSLAPRHASYLPFKRADG 104
           M+FDSSPIAAIATAPGRGGIGVVR+SGK L  +++A+CG  ES L PRHA+YLPFK ADG
Sbjct: 1   MSFDSSPIAAIATAPGRGGIGVVRISGKQLGSLIEAVCGIAESKLTPRHATYLPFKNADG 60

Query: 105 SAIDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARCLEAGVDIGLRLA 157
           S IDQGLAI+F APHSYTGEDVLELQGHGGPVV+QMLL+RCL AG DIGLR+A
Sbjct: 61  SVIDQGLAIYFKAPHSYTGEDVLELQGHGGPVVLQMLLSRCLAAGQDIGLRMA 113


>ref|YP_001101690.1| tRNA modification GTPase TrmE [Herminiimonas arsenicoxydans]
 sp|A4GAN2|MNME_HERAR RecName: Full=tRNA modification GTPase MnmE
 emb|CAL63569.1| tRNA modification GTPase TrmE [Herminiimonas arsenicoxydans]
          Length = 466

 Score =  180 bits (457), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 90/114 (78%), Positives = 101/114 (88%), Gaps = 1/114 (0%)

Query: 45  MTFDSSPIAAIATAPGRGGIGVVRLSGKNLWPVVQAICGKDE-SSLAPRHASYLPFKRAD 103
           MTFDSSPIAAIATAPGRGGIGVVR+SGK+L  V++A+CG D+ SSL  RHA+YL F  +D
Sbjct: 1   MTFDSSPIAAIATAPGRGGIGVVRISGKDLSSVMRAVCGADKGSSLQARHATYLDFVNSD 60

Query: 104 GSAIDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARCLEAGVDIGLRLA 157
           GS IDQGLAI+F APHSYTGEDVLELQGHGGPVV+QMLL RCLEAG DIGLR+A
Sbjct: 61  GSVIDQGLAIYFKAPHSYTGEDVLELQGHGGPVVLQMLLTRCLEAGADIGLRMA 114


>ref|YP_001355383.1| tRNA modification GTPase TrmE [Janthinobacterium sp. Marseille]
 sp|A6T4D6|MNME_JANMA RecName: Full=tRNA modification GTPase MnmE
 gb|ABR89668.1| tRNA modification GTPase [Janthinobacterium sp. Marseille]
          Length = 465

 Score =  177 bits (450), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 83/113 (73%), Positives = 96/113 (84%)

Query: 45  MTFDSSPIAAIATAPGRGGIGVVRLSGKNLWPVVQAICGKDESSLAPRHASYLPFKRADG 104
           M FDSSPIAAIATAPGRGGIGVVR+SGKN+  +++A+C    + L PRHA++  F  ADG
Sbjct: 1   MNFDSSPIAAIATAPGRGGIGVVRVSGKNISSIIEAVCATKGAELQPRHATFTNFVNADG 60

Query: 105 SAIDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARCLEAGVDIGLRLA 157
           S IDQGLAI+F APHSYTGEDVLELQGHGGP+V+QMLL RCLEAG DIGLR+A
Sbjct: 61  SVIDQGLAIYFKAPHSYTGEDVLELQGHGGPIVLQMLLTRCLEAGTDIGLRMA 113


>ref|YP_585751.1| tRNA modification GTPase TrmE [Cupriavidus metallidurans CH34]
 sp|Q1LH94|MNME_RALME RecName: Full=tRNA modification GTPase MnmE
 gb|ABF10482.1| GTPase [Cupriavidus metallidurans CH34]
          Length = 475

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 80/113 (70%), Positives = 96/113 (84%), Gaps = 3/113 (2%)

Query: 45  MTFDSSPIAAIATAPGRGGIGVVRLSGKNLWPVVQAICGKDESSLAPRHASYLPFKRADG 104
           MT    PIAAIATAPGRGGIGVVR+SG ++  V++A+CG+   +L PRHA+YLPF  A G
Sbjct: 1   MTVSQIPIAAIATAPGRGGIGVVRVSGPDVGAVMRAVCGR---ALQPRHATYLPFLDARG 57

Query: 105 SAIDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARCLEAGVDIGLRLA 157
           + ID GLA++FPAP+SYTGE+VLELQGHGGPVVMQMLL+RCLEAG DIGLR+A
Sbjct: 58  NVIDHGLALYFPAPNSYTGEEVLELQGHGGPVVMQMLLSRCLEAGKDIGLRVA 110