BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5457.p         (120 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777712.1| inner-membrane transmembrane protein [Herbas...   179   1e-43
ref|YP_001897596.1| inner membrane protein translocase component...   168   2e-40
ref|ZP_06840457.1| membrane protein insertase [Burkholderia sp. ...   168   2e-40
ref|ZP_02885229.1| 60 kDa inner membrane insertion protein [Burk...   168   3e-40
ref|YP_561017.1| putative inner membrane protein translocase com...   168   3e-40

>ref|YP_003777712.1| inner-membrane transmembrane protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ65804.1| inner-membrane transmembrane protein [Herbaspirillum seropedicae
           SmR1]
          Length = 542

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 88/100 (88%), Positives = 93/100 (93%)

Query: 1   MIHIHAYVGNWGWTIILLTMLIKAVFFPLSAASYRSMAKMKAVTPKMTAIRERHKGDPQA 60
           M HIH  VGNWGWTIILLT+LIK +FFPLSAASYRSMAKMKAV+PKM AIRERHKGDPQA
Sbjct: 335 MTHIHNIVGNWGWTIILLTVLIKLIFFPLSAASYRSMAKMKAVSPKMQAIRERHKGDPQA 394

Query: 61  MNREMMSLYKTEKINPLGGCLPIVIQIPVFISLYWVLLAS 100
           MNREMM+LYKTEKINPLGGCLPI IQIPVFI+LY VLLAS
Sbjct: 395 MNREMMTLYKTEKINPLGGCLPIAIQIPVFIALYSVLLAS 434


>ref|YP_001897596.1| inner membrane protein translocase component YidC [Burkholderia
           phytofirmans PsJN]
 sp|B2T7U1|OXAA_BURPP RecName: Full=Inner membrane protein oxaA
 gb|ACD18372.1| 60 kDa inner membrane insertion protein [Burkholderia phytofirmans
           PsJN]
          Length = 552

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/97 (79%), Positives = 90/97 (92%)

Query: 4   IHAYVGNWGWTIILLTMLIKAVFFPLSAASYRSMAKMKAVTPKMTAIRERHKGDPQAMNR 63
           IH+YVGNWGW+I+LLT+LIKAVFFPLSAASY+SMA+MKA+TP+M A+RER KGDPQ MN 
Sbjct: 357 IHSYVGNWGWSIVLLTLLIKAVFFPLSAASYKSMARMKAITPRMQALRERFKGDPQKMNS 416

Query: 64  EMMSLYKTEKINPLGGCLPIVIQIPVFISLYWVLLAS 100
            +M LYKTEK+NP GGCLP+VIQIPVFISLYWVLL+S
Sbjct: 417 ALMELYKTEKVNPFGGCLPVVIQIPVFISLYWVLLSS 453


>ref|ZP_06840457.1| membrane protein insertase [Burkholderia sp. Ch1-1]
 gb|EFG72177.1| membrane protein insertase [Burkholderia sp. Ch1-1]
          Length = 552

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/97 (79%), Positives = 90/97 (92%)

Query: 4   IHAYVGNWGWTIILLTMLIKAVFFPLSAASYRSMAKMKAVTPKMTAIRERHKGDPQAMNR 63
           IH+YVGNWGW+I+LLT+LIKAVFFPLSAASY+SMA+MKA+TP+M A+RER KGDPQ MN 
Sbjct: 357 IHSYVGNWGWSIVLLTLLIKAVFFPLSAASYKSMARMKAITPRMQALRERFKGDPQKMNS 416

Query: 64  EMMSLYKTEKINPLGGCLPIVIQIPVFISLYWVLLAS 100
            +M LYKTEK+NP GGCLP+VIQIPVFISLYWVLL+S
Sbjct: 417 ALMELYKTEKVNPFGGCLPVVIQIPVFISLYWVLLSS 453


>ref|ZP_02885229.1| 60 kDa inner membrane insertion protein [Burkholderia graminis
           C4D1M]
 gb|EDT09317.1| 60 kDa inner membrane insertion protein [Burkholderia graminis
           C4D1M]
          Length = 552

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 77/97 (79%), Positives = 89/97 (91%)

Query: 4   IHAYVGNWGWTIILLTMLIKAVFFPLSAASYRSMAKMKAVTPKMTAIRERHKGDPQAMNR 63
           IH+YVGNWGW I+LLT+LIKAVFFPLSAASY+SMA+MKA+TP+M A+RER KGDPQ MN 
Sbjct: 357 IHSYVGNWGWAIVLLTLLIKAVFFPLSAASYKSMARMKAITPRMQALRERFKGDPQKMNA 416

Query: 64  EMMSLYKTEKINPLGGCLPIVIQIPVFISLYWVLLAS 100
            +M LYKTEK+NP GGCLP+VIQIPVFISLYWVLL+S
Sbjct: 417 ALMELYKTEKVNPFGGCLPVVIQIPVFISLYWVLLSS 453


>ref|YP_561017.1| putative inner membrane protein translocase component YidC
           [Burkholderia xenovorans LB400]
 sp|Q13SH4|OXAA_BURXL RecName: Full=Inner membrane protein oxaA
 gb|ABE32965.1| protein translocase subunit yidC [Burkholderia xenovorans LB400]
          Length = 552

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 77/97 (79%), Positives = 90/97 (92%)

Query: 4   IHAYVGNWGWTIILLTMLIKAVFFPLSAASYRSMAKMKAVTPKMTAIRERHKGDPQAMNR 63
           IH+YVGNWGW+I+LLT+LIKAVFFPLSAASY+SMA+MKA+TP+M A+RER KGDPQ MN 
Sbjct: 357 IHSYVGNWGWSIVLLTLLIKAVFFPLSAASYKSMARMKAITPRMQALRERFKGDPQKMNS 416

Query: 64  EMMSLYKTEKINPLGGCLPIVIQIPVFISLYWVLLAS 100
            +M LYKTEK+NP GGCLP+VIQIPVFISLYWVLL+S
Sbjct: 417 ALMELYKTEKVNPFGGCLPVVIQIPVFISLYWVLLSS 453