BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5456.p (294 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777711.1| tRNA modification (thiophene/furan oxidation... 514 e-144 ref|YP_004755091.1| GTPase and tRNA-U34 5-formylation enzyme Trm... 453 e-125 ref|YP_001101690.1| tRNA modification GTPase TrmE [Herminiimonas... 429 e-118 ref|YP_001355383.1| tRNA modification GTPase TrmE [Janthinobacte... 426 e-117 ref|ZP_08274923.1| GTPase and tRNA-U34 5-formylation enzyme TrmE... 407 e-112 >ref|YP_003777711.1| tRNA modification (thiophene/furan oxidation) GTPase [Herbaspirillum seropedicae SmR1] gb|ADJ65803.1| tRNA modification (thiophene/furan oxidation) GTPase protein [Herbaspirillum seropedicae SmR1] Length = 479 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 286/294 (97%), Positives = 292/294 (99%) Query: 1 MLVEATLDFPEEEIDFLKQSDARGQLATIRSTLEEVFRHAAQGALLRDGLNAVLAGKPNV 60 MLVEATLDFPEEEIDFLKQSDARGQLATIRSTLEEVF+HAAQGALLRDGLNAVLAGKPNV Sbjct: 186 MLVEATLDFPEEEIDFLKQSDARGQLATIRSTLEEVFKHAAQGALLRDGLNAVLAGKPNV 245 Query: 61 GKSSLLNVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGEDGSGPDEV 120 GKSSLLNVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAG+DGSGPDEV Sbjct: 246 GKSSLLNVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGDDGSGPDEV 305 Query: 121 ERIGIERTWAEVAKADVILHMLDADRGPTLEDEKITARFPEGVPIIRIWNKIDRSGHKPA 180 ERIGIERTWAEVAKADVILHMLDADRGPTLEDEKIT+RFP+GVPIIRIWNKIDRSGHK A Sbjct: 306 ERIGIERTWAEVAKADVILHMLDADRGPTLEDEKITSRFPDGVPIIRIWNKIDRSGHKAA 365 Query: 181 VDPMPDATHVYLSAAEGQGVELLRAELLRIAGWQQTVESRYLARERHLLALKAADEHLAH 240 VD MPDATHVYLSA+EGQGV+LLRAELLRIAGWQQTVESRYLARERHLLALKAADEHLAH Sbjct: 366 VDKMPDATHVYLSASEGQGVDLLRAELLRIAGWQQTVESRYLARERHLLALKAADEHLAH 425 Query: 241 AAAHAALDNEAGEHALDLFAEELRLAQERLSSITGKFTPDDLLGVIFSRFCIGK 294 AAAHAALDNEAGEHALDLFAEELRLAQERLSSITGKFTPDDLLGVIFSRFCIGK Sbjct: 426 AAAHAALDNEAGEHALDLFAEELRLAQERLSSITGKFTPDDLLGVIFSRFCIGK 479 >ref|YP_004755091.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Collimonas fungivorans Ter331] gb|AEK64268.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Collimonas fungivorans Ter331] Length = 465 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 240/294 (81%), Positives = 261/294 (88%), Gaps = 3/294 (1%) Query: 1 MLVEATLDFPEEEIDFLKQSDARGQLATIRSTLEEVFRHAAQGALLRDGLNAVLAGKPNV 60 MLVEATLDFPEEEIDFL++SDARGQLATIRSTL+ VF AAQGALLRDGLN VLAG+PNV Sbjct: 175 MLVEATLDFPEEEIDFLEKSDARGQLATIRSTLDNVFSQAAQGALLRDGLNIVLAGQPNV 234 Query: 61 GKSSLLNVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGEDGSGPDEV 120 GKSSLLNVLAGSDVAIVTPIAGTTRDKVT+TIQ+EG+PLNIIDTAGIREA ED + DEV Sbjct: 235 GKSSLLNVLAGSDVAIVTPIAGTTRDKVTETIQLEGIPLNIIDTAGIREA-EDAN--DEV 291 Query: 121 ERIGIERTWAEVAKADVILHMLDADRGPTLEDEKITARFPEGVPIIRIWNKIDRSGHKPA 180 ERIGIERTWA VA ADVILHMLDA+ GP+L DEKI ARFP PIIRIWNKID+SGHKPA Sbjct: 292 ERIGIERTWAAVANADVILHMLDANHGPSLADEKIVARFPNSAPIIRIWNKIDQSGHKPA 351 Query: 181 VDPMPDATHVYLSAAEGQGVELLRAELLRIAGWQQTVESRYLARERHLLALKAADEHLAH 240 VD M DATH+YLSA + G++LLR ELLRIAGWQQT ESRYLARERHL+ALKAA +HL Sbjct: 352 VDVMNDATHIYLSATDHLGIDLLRTELLRIAGWQQTGESRYLARERHLIALKAARDHLEI 411 Query: 241 AAAHAALDNEAGEHALDLFAEELRLAQERLSSITGKFTPDDLLGVIFSRFCIGK 294 A HA+LDN + +LDLFAEELRLAQ+RLSSITG FTPDDLLGVIFSRFCIGK Sbjct: 412 ADQHASLDNRVNDQSLDLFAEELRLAQDRLSSITGAFTPDDLLGVIFSRFCIGK 465 >ref|YP_001101690.1| tRNA modification GTPase TrmE [Herminiimonas arsenicoxydans] sp|A4GAN2|MNME_HERAR RecName: Full=tRNA modification GTPase MnmE emb|CAL63569.1| tRNA modification GTPase TrmE [Herminiimonas arsenicoxydans] Length = 466 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 225/294 (76%), Positives = 250/294 (85%), Gaps = 3/294 (1%) Query: 1 MLVEATLDFPEEEIDFLKQSDARGQLATIRSTLEEVFRHAAQGALLRDGLNAVLAGKPNV 60 MLVEATLDFPEEEIDFL++SDARGQL IR L+ VF AAQGALLRDGLN VLAG+PNV Sbjct: 176 MLVEATLDFPEEEIDFLEKSDARGQLTNIREALQRVFSQAAQGALLRDGLNIVLAGQPNV 235 Query: 61 GKSSLLNVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGEDGSGPDEV 120 GKSSLLN LAGSDVAIVTPIAGTTRDKV +TIQIEG+P+N+IDTAGIR+A + G DEV Sbjct: 236 GKSSLLNALAGSDVAIVTPIAGTTRDKVIETIQIEGIPVNVIDTAGIRDAADAG---DEV 292 Query: 121 ERIGIERTWAEVAKADVILHMLDADRGPTLEDEKITARFPEGVPIIRIWNKIDRSGHKPA 180 ERIGIERTWA V ADVI+HMLDA RGPT DE+IT RFP VP++R+WNKID SGH+PA Sbjct: 293 ERIGIERTWAAVQTADVIVHMLDASRGPTRADEQITERFPANVPVMRVWNKIDLSGHRPA 352 Query: 181 VDPMPDATHVYLSAAEGQGVELLRAELLRIAGWQQTVESRYLARERHLLALKAADEHLAH 240 +D MPDATH+YLSA G++LLR ELL + GWQQT ES YLARERHL+ALK+A HL Sbjct: 353 IDRMPDATHIYLSATGLLGMDLLRTELLHLVGWQQTGESLYLARERHLVALKSAHSHLEM 412 Query: 241 AAAHAALDNEAGEHALDLFAEELRLAQERLSSITGKFTPDDLLGVIFSRFCIGK 294 AA HAA DNEA + ALDLFAEELRLAQERLSSITG+FT DDLLGVIFSRFCIGK Sbjct: 413 AAQHAAHDNEATDPALDLFAEELRLAQERLSSITGEFTSDDLLGVIFSRFCIGK 466 >ref|YP_001355383.1| tRNA modification GTPase TrmE [Janthinobacterium sp. Marseille] sp|A6T4D6|MNME_JANMA RecName: Full=tRNA modification GTPase MnmE gb|ABR89668.1| tRNA modification GTPase [Janthinobacterium sp. Marseille] Length = 465 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 221/294 (75%), Positives = 253/294 (86%), Gaps = 3/294 (1%) Query: 1 MLVEATLDFPEEEIDFLKQSDARGQLATIRSTLEEVFRHAAQGALLRDGLNAVLAGKPNV 60 MLVEATLDFPEEEIDFL++SDARGQL IR L+ VF A+QGALLRDGLN VLAG+PNV Sbjct: 175 MLVEATLDFPEEEIDFLEKSDARGQLNGIREALQAVFTQASQGALLRDGLNIVLAGQPNV 234 Query: 61 GKSSLLNVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGEDGSGPDEV 120 GKSSLLN LAGSDVAIVT IAGTTRDKV +TIQIEG+P+N+IDTAGIR+A + DEV Sbjct: 235 GKSSLLNALAGSDVAIVTAIAGTTRDKVIETIQIEGIPVNVIDTAGIRDASD---ATDEV 291 Query: 121 ERIGIERTWAEVAKADVILHMLDADRGPTLEDEKITARFPEGVPIIRIWNKIDRSGHKPA 180 ERIGIERTWA V ADVI+HMLDA+RGPT DE+I RFPE +P++RIWNKID SGH+PA Sbjct: 292 ERIGIERTWAAVKTADVIIHMLDANRGPTRADEQIVERFPENIPVMRIWNKIDLSGHRPA 351 Query: 181 VDPMPDATHVYLSAAEGQGVELLRAELLRIAGWQQTVESRYLARERHLLALKAADEHLAH 240 +D MPD+TH+Y+SA + QG++LLR ELLR+ GWQQT ES YLARERHL+ALK+A +HL Sbjct: 352 IDRMPDSTHIYVSATDLQGMDLLRGELLRLIGWQQTGESLYLARERHLVALKSAHDHLEM 411 Query: 241 AAAHAALDNEAGEHALDLFAEELRLAQERLSSITGKFTPDDLLGVIFSRFCIGK 294 AA HAA D+EA + ALDLFAEELRLAQERLSSITG+FT DDLLGVIFSRFCIGK Sbjct: 412 AAQHAAHDSEATDPALDLFAEELRLAQERLSSITGEFTSDDLLGVIFSRFCIGK 465 >ref|ZP_08274923.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Oxalobacteraceae bacterium IMCC9480] gb|EGF31597.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Oxalobacteraceae bacterium IMCC9480] Length = 433 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 224/294 (76%), Positives = 253/294 (86%), Gaps = 7/294 (2%) Query: 1 MLVEATLDFPEEEIDFLKQSDARGQLATIRSTLEEVFRHAAQGALLRDGLNAVLAGKPNV 60 MLVEATLDFPEEEIDFL++SDARG+LA IR TL++VFR +AQGALLRDGLN VLAG+PNV Sbjct: 147 MLVEATLDFPEEEIDFLEKSDARGKLAAIRDTLQKVFRQSAQGALLRDGLNIVLAGQPNV 206 Query: 61 GKSSLLNVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGEDGSGPDEV 120 GKSSLLN LAG+D+AIVTPIAGTTRDKVT+TIQIEG+PLNIIDTAGIR D D+V Sbjct: 207 GKSSLLNALAGADIAIVTPIAGTTRDKVTETIQIEGIPLNIIDTAGIRY---DAEAIDDV 263 Query: 121 ERIGIERTWAEVAKADVILHMLDADRGPTLEDEKITARFPEGVPIIRIWNKIDRSGHKPA 180 ERIGIERTWA VA+ADVI+H+LDA RGPTL DE I ARFP +P++R+WNKID SGHKPA Sbjct: 264 ERIGIERTWAAVAQADVIIHLLDACRGPTLADESIVARFPANIPVMRVWNKIDLSGHKPA 323 Query: 181 VDPMPDATHVYLSAAEGQGVELLRAELLRIAGWQQTVESRYLARERHLLALKAADEHLAH 240 +D + DATH+YLSA + G+ELLR ELLR+AGWQQT ES YLARERHL+AL AA HL Sbjct: 324 IDRLVDATHIYLSATDQLGMELLREELLRLAGWQQTGESLYLARERHLVALAAAQTHLQF 383 Query: 241 AAAHAALDNEAGEHALDLFAEELRLAQERLSSITGKFTPDDLLGVIFSRFCIGK 294 AA HAAL+ +HALDLFAEELRLAQE+LSSITG FT DDLLGVIFSRFCIGK Sbjct: 384 AAEHAALN----DHALDLFAEELRLAQEQLSSITGAFTSDDLLGVIFSRFCIGK 433