BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5452.p (213 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777708.1| TetR family transcription regulator protein ... 370 e-101 ref|YP_003048531.1| TetR family transcriptional regulator [Methy... 164 9e-39 ref|YP_003395103.1| TetR family transcriptional regulator [Conex... 152 4e-35 ref|YP_633362.1| transcriptional regulator SocA3 [Myxococcus xan... 150 1e-34 ref|ZP_02465384.1| transcriptional regulator, TetR family protei... 148 4e-34 >ref|YP_003777708.1| TetR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65800.1| TetR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 210 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 197/209 (94%), Positives = 205/209 (98%) Query: 1 MIKTRGRPRSFDRDQALQQAMQVFWSKGYEGTTMADLCEAIGVKAPSLYSAFGDKDALFR 60 MI+TRGRPRSFDRDQALQQAMQVFWSKGYEGTTMADL EAIGVKAPSLY+AFGDKDALFR Sbjct: 1 MIRTRGRPRSFDRDQALQQAMQVFWSKGYEGTTMADLTEAIGVKAPSLYAAFGDKDALFR 60 Query: 61 EVMEVYSRTISAEPLRLLQAGQGIREDLQAMLRASVRMYSGKSTVPGLPTGKGCMVVISA 120 EV+EVY+RT+SAEPLRLLQAG+GIREDLQAMLRASVRMYSGKSTVPGLP GKGCMVVISA Sbjct: 61 EVVEVYARTVSAEPLRLLQAGKGIREDLQAMLRASVRMYSGKSTVPGLPAGKGCMVVISA 120 Query: 121 INCAPENSEHSDALSQRRHKRRNEIRARLLQAQREGEIRADADVTALGDFYTSFLNGLAL 180 INCAPENSEHSDALSQRRHKRRNEIRARLLQAQREGEIRADADVTALGDFYTSFLNGLAL Sbjct: 121 INCAPENSEHSDALSQRRHKRRNEIRARLLQAQREGEIRADADVTALGDFYTSFLNGLAL 180 Query: 181 GARDGVSSARLAATLQPAMLPLESVLSGS 209 GA+DGVSSARLAATL PAMLPLESVL G+ Sbjct: 181 GAKDGVSSARLAATLGPAMLPLESVLLGA 209 >ref|YP_003048531.1| TetR family transcriptional regulator [Methylotenera mobilis JLW8] gb|ACT48004.1| transcriptional regulator, TetR family [Methylotenera mobilis JLW8] Length = 200 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 79/201 (39%), Positives = 127/201 (63%), Gaps = 6/201 (2%) Query: 6 GRPRSFDRDQALQQAMQVFWSKGYEGTTMADLCEAIGVKAPSLYSAFGDKDALFREVMEV 65 GRPR+FDRD AL +AM +FW KGYEGTTM D+ IG KAPS+Y+AFG+KD LF EV+ + Sbjct: 5 GRPRTFDRDDALNKAMLIFWEKGYEGTTMTDIINVIGTKAPSVYAAFGNKDKLFNEVVNL 64 Query: 66 YSRTISAEPLRLLQAGQGIREDLQAMLRASVRMYSGKSTVPGLPTGKGCMVVISAINCAP 125 Y+ + A PL+ L I + +++ L ++V +++ + P C+++ +A NC+P Sbjct: 65 YAEILKAGPLKALNDHSSIYDAIRSSLYSNVEIFTSSNN----PC--SCLIMTAANNCSP 118 Query: 126 ENSEHSDALSQRRHKRRNEIRARLLQAQREGEIRADADVTALGDFYTSFLNGLALGARDG 185 E+SEH L R + I R QA +G++ + A+ L ++Y +F++GLAL A+DG Sbjct: 119 EHSEHMSNLKNLRTNYKRAIEVRFQQAVADGQLISSANPQTLAEYYMTFVHGLALRAKDG 178 Query: 186 VSSARLAATLQPAMLPLESVL 206 V+ + L + A++ ++ +L Sbjct: 179 VNKSELLTSTDYALVTVKLML 199 >ref|YP_003395103.1| TetR family transcriptional regulator [Conexibacter woesei DSM 14684] gb|ADB51728.1| transcriptional regulator, TetR family [Conexibacter woesei DSM 14684] Length = 205 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 84/211 (39%), Positives = 129/211 (61%), Gaps = 6/211 (2%) Query: 2 IKTRGRPRSFDRDQALQQAMQVFWSKGYEGTTMADLCEAIGVKAPSLYSAFGDKDALFRE 61 + RGRPR+FDRD AL++AM+VFW +GYEG ++ADL +G+ +PSLY+AFG K+ LFRE Sbjct: 1 MAARGRPRTFDRDAALRRAMEVFWERGYEGVSLADLTTEMGIASPSLYAAFGSKEGLFRE 60 Query: 62 VMEVYSRTISAEPLRLLQAGQGIREDLQAMLRASVRMYSGKSTVPGLPTGKGCMVVISAI 121 + +Y R L R ++AMLR + Y T PG PT GCMVV++A Sbjct: 61 AVALYGTLEGGATARALAVQSTARAAIEAMLRDNAAGY----TTPGRPT--GCMVVLAAT 114 Query: 122 NCAPENSEHSDALSQRRHKRRNEIRARLLQAQREGEIRADADVTALGDFYTSFLNGLALG 181 N +P N D ++++R R ++RAR+ + +G++ + DV AL + + L+GL+ Sbjct: 115 NVSPANQGIGDFMAEQRRTAREDVRARIARGVADGDVGPETDVDALAAYVATVLHGLSFE 174 Query: 182 ARDGVSSARLAATLQPAMLPLESVLSGSIPS 212 ARDGVS L A + AM+ +++++ P+ Sbjct: 175 ARDGVSCDTLNAIVDRAMVTWDALVAPPSPA 205 >ref|YP_633362.1| transcriptional regulator SocA3 [Myxococcus xanthus DK 1622] gb|ABF88556.1| transcriptional regulator SocA3 [Myxococcus xanthus DK 1622] Length = 194 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 82/195 (42%), Positives = 122/195 (62%), Gaps = 6/195 (3%) Query: 6 GRPRSFDRDQALQQAMQVFWSKGYEGTTMADLCEAIGVKAPSLYSAFGDKDALFREVMEV 65 GRPR FDRD+AL +AM+VFW++GYEGT++ DL +A+GV PSLYS FG K+ LFRE +E+ Sbjct: 2 GRPRGFDRDEALVEAMRVFWARGYEGTSIQDLVDAMGVNKPSLYSIFGCKEELFREAVEL 61 Query: 66 YSRTISAEPLRLLQAGQGIREDLQAMLRASVRMYSGKSTVPGLPTGKGCMVVISAINCAP 125 Y R R L+ R ++ MLRA+ R Y+ +GCM+V+S++ +P Sbjct: 62 YDRLEGIHTTRSLEDAPSARAAVEEMLRANARAYTASD------KPRGCMIVLSSLLGSP 115 Query: 126 ENSEHSDALSQRRHKRRNEIRARLLQAQREGEIRADADVTALGDFYTSFLNGLALGARDG 185 EN L++ R + ++ RL + +G++ A A+V L FYT+ L GL++ +RDG Sbjct: 116 ENERVRTFLAENRLRGERALKQRLERGILDGDLPASAEVGMLAAFYTTVLEGLSIQSRDG 175 Query: 186 VSSARLAATLQPAML 200 S+ +LAA + AML Sbjct: 176 ASAKKLAAIIDAAML 190 >ref|ZP_02465384.1| transcriptional regulator, TetR family protein [Burkholderia thailandensis MSMB43] Length = 205 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 84/201 (41%), Positives = 121/201 (60%), Gaps = 6/201 (2%) Query: 6 GRPRSFDRDQALQQAMQVFWSKGYEGTTMADLCEAIGVKAPSLYSAFGDKDALFREVMEV 65 GRPR FDRD AL++AM FW +GYEGT+M+DL E +G+ + +Y+AFG K+ALF E + + Sbjct: 7 GRPREFDRDMALKRAMLAFWRRGYEGTSMSDLVEVMGIASARIYAAFGSKEALFHEAVTL 66 Query: 66 YSRTISAEPLRLLQAGQGIREDLQAMLRASVRMYSGKSTVPGLPTGKGCMVVISAINCAP 125 Y + R L +R ++ MLR ++ Y+ + G P GCMVV +A NCA Sbjct: 67 YEQGDGGFADRALSEETDVRAAIERMLRDAIATYTKR----GHP--HGCMVVSAATNCAA 120 Query: 126 ENSEHSDALSQRRHKRRNEIRARLLQAQREGEIRADADVTALGDFYTSFLNGLALGARDG 185 EN + L+ R R I RL A +G++ D+ AL DFY + L+G+++ +RDG Sbjct: 121 ENEGVVEWLAAHRRARTQSIAERLRLATEQGQLAPGTDIKALADFYATQLHGISVQSRDG 180 Query: 186 VSSARLAATLQPAMLPLESVL 206 VS RL A++ PAM+PL L Sbjct: 181 VSKERLLASIGPAMMPLAMAL 201