BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5450.p (308 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777706.1| DNA recombination-dependent growth factor C ... 578 e-163 ref|YP_004754937.1| DNA recombination-dependent growth factor C ... 446 e-123 sp|A4G416|RDGC_HERAR RecName: Full=Recombination-associated prot... 442 e-122 ref|YP_001352866.1| recombination associated protein [Janthinoba... 434 e-119 gb|EGP44858.1| recombination associated protein [Achromobacter x... 400 e-109 >ref|YP_003777706.1| DNA recombination-dependent growth factor C protein [Herbaspirillum seropedicae SmR1] gb|ADJ65798.1| DNA recombination-dependent growth factor C protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 578 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 302/308 (98%), Positives = 307/308 (99%) Query: 1 MWFKNLQIYRLPAPWAINADELESHLAPQAFTACSSLDMQSQGWVPPRNNEKLVHVVNRQ 60 MWFKNLQIYRLPAPWAI+ADELESHLAPQAFTACSSLDMQSQGWVPPRNNEKLVHVVNRQ Sbjct: 1 MWFKNLQIYRLPAPWAISADELESHLAPQAFTACSSLDMQSQGWVPPRNNEKLVHVVNRQ 60 Query: 61 LLLKLDTEKKLLPSTVINQVTKARAAELEEQQGFPPGRKQTKELKEQVTDELLPRAFSVV 120 LL+KLDTEKKLLPSTVINQVTKARAAELEEQQGFPPGRKQTKELKEQVTDELLPRAFSVV Sbjct: 61 LLMKLDTEKKLLPSTVINQVTKARAAELEEQQGFPPGRKQTKELKEQVTDELLPRAFSVV 120 Query: 121 RSTWVWIDPVNGWLLVDAGSPSKAEEVLKLLFKAIPKFPLETLRTVMSPAAAMTDWLASD 180 RSTWVWIDPVNGWLLVDAGSPSKAEEVLKLLFKAIPKFPLETLRTVMSPAAAMTDWLASD Sbjct: 121 RSTWVWIDPVNGWLLVDAGSPSKAEEVLKLLFKAIPKFPLETLRTVMSPAAAMTDWLASD 180 Query: 181 EAPNGFTVDQDTELRSTAESKATVRYVRHTLEADDIRRHIEAGKQCTRLALTWADKVSFV 240 EAPNGFTVDQDTELRSTAESKATVRYVRHTLEA+DIRRHIEAGKQCTRLALTWADKVSFV Sbjct: 181 EAPNGFTVDQDTELRSTAESKATVRYVRHTLEAEDIRRHIEAGKQCTRLALTWADKVSFV 240 Query: 241 LTENLSVKRIAPLDVLKEDSEIAGKNDDERFDGDFMLMTGELAKLLTALVDALGGQLKEN 300 LTENLSVKRIAPLDVLKEDSEIAGKNDDERFDGDFMLMTGELAKLLTALVDALGGQL+EN Sbjct: 241 LTENLSVKRIAPLDVLKEDSEIAGKNDDERFDGDFMLMTGELAKLLTALVDALGGQLREN 300 Query: 301 DGTLARAA 308 DG LA+AA Sbjct: 301 DGALAQAA 308 >ref|YP_004754937.1| DNA recombination-dependent growth factor C [Collimonas fungivorans Ter331] gb|AEK64114.1| DNA recombination-dependent growth factor C [Collimonas fungivorans Ter331] Length = 299 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 217/296 (73%), Positives = 260/296 (87%) Query: 1 MWFKNLQIYRLPAPWAINADELESHLAPQAFTACSSLDMQSQGWVPPRNNEKLVHVVNRQ 60 MWFKNLQIYR+PAPWAI+A++LE+ LAPQAF CSSL++QSQGW+ PR+N LVH VNRQ Sbjct: 1 MWFKNLQIYRIPAPWAISAEQLEAFLAPQAFAKCSSLELQSQGWLSPRDNGMLVHSVNRQ 60 Query: 61 LLLKLDTEKKLLPSTVINQVTKARAAELEEQQGFPPGRKQTKELKEQVTDELLPRAFSVV 120 +++ L TEKKLLP+TVINQVTKARAAE+EEQQG+ PGRKQ K+LKEQVTDELLPRAFS+ Sbjct: 61 MMILLGTEKKLLPATVINQVTKARAAEIEEQQGYAPGRKQLKDLKEQVTDELLPRAFSIQ 120 Query: 121 RSTWVWIDPVNGWLLVDAGSPSKAEEVLKLLFKAIPKFPLETLRTVMSPAAAMTDWLASD 180 R+TWVWIDPVNGWL++DA SP+KAEE+LKLL ++ K + +LRT SP +MT+WLASD Sbjct: 121 RNTWVWIDPVNGWLVIDAASPTKAEEILKLLLASVDKLQISSLRTAHSPLTSMTNWLASD 180 Query: 181 EAPNGFTVDQDTELRSTAESKATVRYVRHTLEADDIRRHIEAGKQCTRLALTWADKVSFV 240 EAP+GFTVDQDTELR+ E KATVRYVRHT+EADD+RRHI +GKQCTRLA+TWAD VSFV Sbjct: 181 EAPHGFTVDQDTELRAAGEGKATVRYVRHTIEADDVRRHIASGKQCTRLAMTWADHVSFV 240 Query: 241 LTENLSVKRIAPLDVLKEDSEIAGKNDDERFDGDFMLMTGELAKLLTALVDALGGQ 296 LTE+L++KRIAPLDVLKE ++ + KNDDERFD D MLMTGEL+K+L LV ALGG+ Sbjct: 241 LTESLAIKRIAPLDVLKEGNDTSSKNDDERFDSDMMLMTGELSKMLGDLVFALGGE 296 >sp|A4G416|RDGC_HERAR RecName: Full=Recombination-associated protein rdgC emb|CAL61253.2| Recombination-associated protein RdgC [Herminiimonas arsenicoxydans] Length = 300 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 218/296 (73%), Positives = 258/296 (87%) Query: 1 MWFKNLQIYRLPAPWAINADELESHLAPQAFTACSSLDMQSQGWVPPRNNEKLVHVVNRQ 60 MWFKNLQIYRLPAPWAI A++LE+ LAP AF CSSLDMQSQGWV PR N LV+ +N+Q Sbjct: 1 MWFKNLQIYRLPAPWAITAEQLETDLAPHAFLPCSSLDMQSQGWVSPRENGALVYTLNKQ 60 Query: 61 LLLKLDTEKKLLPSTVINQVTKARAAELEEQQGFPPGRKQTKELKEQVTDELLPRAFSVV 120 ++L L TEKKLLP+TVINQVTK +AAE+EEQQGF PGRKQ KELKE VTDELLPRAFS+ Sbjct: 61 IMLLLGTEKKLLPTTVINQVTKIKAAEIEEQQGFKPGRKQMKELKEDVTDELLPRAFSIW 120 Query: 121 RSTWVWIDPVNGWLLVDAGSPSKAEEVLKLLFKAIPKFPLETLRTVMSPAAAMTDWLASD 180 R TWVWIDPVNGWL+VDAGSP+KA+EV+KLL K++ K PL+TL V SP AAMT WL +D Sbjct: 121 RQTWVWIDPVNGWLVVDAGSPAKADEVIKLLIKSVDKLPLDTLHVVQSPVAAMTQWLLTD 180 Query: 181 EAPNGFTVDQDTELRSTAESKATVRYVRHTLEADDIRRHIEAGKQCTRLALTWADKVSFV 240 EAP+GFTVDQDTELRST E KATVRYVRHTLEA+D++RHI AGKQCTRLA++WADK+SFV Sbjct: 181 EAPSGFTVDQDTELRSTGEGKATVRYVRHTLEAEDVQRHIAAGKQCTRLAMSWADKISFV 240 Query: 241 LTENLSVKRIAPLDVLKEDSEIAGKNDDERFDGDFMLMTGELAKLLTALVDALGGQ 296 LTE+L++KR+APLDV+KE+++ +NDDERFD D MLMTGEL+++L LV ALGG+ Sbjct: 241 LTESLAIKRVAPLDVIKENTDTTAQNDDERFDSDVMLMTGELSRMLADLVQALGGE 296 >ref|YP_001352866.1| recombination associated protein [Janthinobacterium sp. Marseille] sp|A6SX69|RDGC_JANMA RecName: Full=Recombination-associated protein rdgC gb|ABR88430.1| recombination associated protein [Janthinobacterium sp. Marseille] Length = 300 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 211/299 (70%), Positives = 260/299 (86%) Query: 1 MWFKNLQIYRLPAPWAINADELESHLAPQAFTACSSLDMQSQGWVPPRNNEKLVHVVNRQ 60 MWFKNLQIYRLPAPWA++A++L + LAP AF CSSL+MQSQGWV PR N +LV+ +N+Q Sbjct: 1 MWFKNLQIYRLPAPWAVSAEQLAADLAPHAFQPCSSLEMQSQGWVSPRENGELVYSLNKQ 60 Query: 61 LLLKLDTEKKLLPSTVINQVTKARAAELEEQQGFPPGRKQTKELKEQVTDELLPRAFSVV 120 +LL L TEKKLLP+TVINQVTK +AAE+EEQQGF PGRKQ KE+KE+VTD+LLPRAFSV Sbjct: 61 MLLLLGTEKKLLPTTVINQVTKIKAAEIEEQQGFKPGRKQMKEIKEEVTDDLLPRAFSVW 120 Query: 121 RSTWVWIDPVNGWLLVDAGSPSKAEEVLKLLFKAIPKFPLETLRTVMSPAAAMTDWLASD 180 R TWVWIDPVNGW++VDAGSP+KA+EV+KLL K++ K PLETL SP AMT+WL +D Sbjct: 121 RQTWVWIDPVNGWMVVDAGSPAKADEVIKLLVKSVDKLPLETLHVAQSPVTAMTEWLVAD 180 Query: 181 EAPNGFTVDQDTELRSTAESKATVRYVRHTLEADDIRRHIEAGKQCTRLALTWADKVSFV 240 AP+GFTVDQDTELR+T E KATVRYVRHTLEADD+RRHI +GKQCTRLA+TWADK+SFV Sbjct: 181 TAPHGFTVDQDTELRATGEGKATVRYVRHTLEADDVRRHIASGKQCTRLAMTWADKISFV 240 Query: 241 LTENLSVKRIAPLDVLKEDSEIAGKNDDERFDGDFMLMTGELAKLLTALVDALGGQLKE 299 LTE+L++KR+ PLDV+KE+++ +ND+ERFD D MLMTGEL+++L LV ALGG++++ Sbjct: 241 LTESLTIKRVTPLDVIKENADSTAQNDEERFDSDIMLMTGELSRMLADLVAALGGEVEK 299 >gb|EGP44858.1| recombination associated protein [Achromobacter xylosoxidans AXX-A] Length = 299 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 195/298 (65%), Positives = 239/298 (80%) Query: 1 MWFKNLQIYRLPAPWAINADELESHLAPQAFTACSSLDMQSQGWVPPRNNEKLVHVVNRQ 60 MWFKNL+IYRL +PW + ++LE LA A+ A ++L+MQS GWVPPR N L HVV Q Sbjct: 1 MWFKNLKIYRLSSPWTLTGEQLEETLARHAYQAGNNLEMQSLGWVPPRENGGLAHVVGGQ 60 Query: 61 LLLKLDTEKKLLPSTVINQVTKARAAELEEQQGFPPGRKQTKELKEQVTDELLPRAFSVV 120 +LL L EKKLLPSTV+NQV KARA E+EEQQG+ PGRKQ KE+KE+VTDELLPRAFSV Sbjct: 61 ILLNLRAEKKLLPSTVVNQVAKARAQEIEEQQGYKPGRKQMKEIKERVTDELLPRAFSVY 120 Query: 121 RSTWVWIDPVNGWLLVDAGSPSKAEEVLKLLFKAIPKFPLETLRTVMSPAAAMTDWLASD 180 R T VWIDP N WL++DA + +KA+EV+ LL K + FPLE L SPA+AMT WLA D Sbjct: 121 RDTRVWIDPQNHWLVIDAAASAKADEVIGLLAKCVDPFPLENLYVAQSPASAMTGWLAED 180 Query: 181 EAPNGFTVDQDTELRSTAESKATVRYVRHTLEADDIRRHIEAGKQCTRLALTWADKVSFV 240 EAP+ F++DQDTELRS+ ES A +RYV+H+++ADD+RRHI++GKQCTRLA+TWAD++SFV Sbjct: 181 EAPSNFSIDQDTELRSSGESGAAIRYVKHSIDADDVRRHIQSGKQCTRLAMTWADRISFV 240 Query: 241 LTENLSVKRIAPLDVLKEDSEIAGKNDDERFDGDFMLMTGELAKLLTALVDALGGQLK 298 LTE L VKR+APLDVLKE ++ NDDE+FD D MLMTGELAK+L LVDALGG+ K Sbjct: 241 LTEGLDVKRVAPLDVLKEGNDTVATNDDEKFDSDMMLMTGELAKMLAELVDALGGEKK 298