BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5449.p (384 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777705.1| nucleotidyltransferase/DNA polymerase involv... 675 0.0 ref|YP_001355275.1| DNA-damage-inducible protein p [Janthinobact... 533 e-149 ref|YP_004752933.1| DNA polymerase IV [Collimonas fungivorans Te... 523 e-146 ref|YP_004029240.1| DNA polymerase IV [Burkholderia rhizoxinica ... 511 e-143 ref|YP_003607086.1| DNA-directed DNA polymerase [Burkholderia sp... 503 e-140 >ref|YP_003777705.1| nucleotidyltransferase/DNA polymerase involved in DNA repair protein [Herbaspirillum seropedicae SmR1] gb|ADJ65797.1| nucleotidyltransferase/DNA polymerase involved in DNA repair protein [Herbaspirillum seropedicae SmR1] Length = 384 Score = 675 bits (1741), Expect = 0.0, Method: Composition-based stats. Identities = 352/383 (91%), Positives = 369/383 (96%) Query: 1 MANERRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAG 60 MAN+RRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAG Sbjct: 1 MANDRRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAG 60 Query: 61 RGVVTTSTYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVRSIAPLI 120 RGVVTTSTYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVR+IAPLI Sbjct: 61 RGVVTTSTYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVRNIAPLI 120 Query: 121 EDRGIDEIYIDLSAWPDTAHEVARQIKDAVHAATALTCSVGVAPNKMLAKISSELDKPDG 180 EDRGIDEIYIDLSAW DTA EVARQIKDAVHAAT+LTCS+GVAPNKMLAKISSELDKP+G Sbjct: 121 EDRGIDEIYIDLSAWSDTAPEVARQIKDAVHAATSLTCSIGVAPNKMLAKISSELDKPNG 180 Query: 181 LTILTPEDIERRIWPLPARKINGIGPKAAEKLAALGIETVADLARASPELLRAHFGRSYS 240 LTILTP DIERRIWPLP RKINGIGPKAAEKL+ALGI+TVADLA A+P+LLRAHFGRSY+ Sbjct: 181 LTILTPADIERRIWPLPVRKINGIGPKAAEKLSALGIDTVADLAGAAPDLLRAHFGRSYA 240 Query: 241 EWLGRVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRTQLSEIFTTLCVKLAGDLER 300 EWLGRVAQGVDDRPVQTYSEPKSISRETTFERDLHARADR QLSEIFT LCVKLA DL+R Sbjct: 241 EWLGRVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRAQLSEIFTALCVKLAADLDR 300 Query: 301 KGYVGRTIGIKLKYADFQGVTRDVTLPAPTGDAATIRQAAGECLKRVPLEKKLRLLGVRV 360 KGYVGRTIGIKLKYADF+GVTRDVTLP+PTGDAA IRQAAGECLKRVPL+KKLRLLGVRV Sbjct: 301 KGYVGRTIGIKLKYADFRGVTRDVTLPSPTGDAAAIRQAAGECLKRVPLDKKLRLLGVRV 360 Query: 361 GALSRKDELALTAQALQAELPFG 383 GALS+KDE A + A+QAELPF Sbjct: 361 GALSKKDEQAAASHAVQAELPFA 383 >ref|YP_001355275.1| DNA-damage-inducible protein p [Janthinobacterium sp. Marseille] gb|ABR88469.1| DNA-damage-inducible protein p [Janthinobacterium sp. Marseille] Length = 401 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 272/378 (71%), Positives = 314/378 (83%) Query: 3 NERRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAGRG 62 N RRIAHLDMDAFYASVELLRYP+LRGQ VVIGG S P+ DG+RQY R+RDYAGRG Sbjct: 20 NGRRIAHLDMDAFYASVELLRYPELRGQPVVIGGMSVHAPLTQADGSRQYARLRDYAGRG 79 Query: 63 VVTTSTYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVRSIAPLIED 122 VVTTSTYEARALGVFSAMGIMKAA+LAPDAILLP DF+AYR YSRLFK+AV IAP IE+ Sbjct: 80 VVTTSTYEARALGVFSAMGIMKAAKLAPDAILLPVDFDAYRHYSRLFKQAVADIAPHIEN 139 Query: 123 RGIDEIYIDLSAWPDTAHEVARQIKDAVHAATALTCSVGVAPNKMLAKISSELDKPDGLT 182 RGIDEIYIDLS + H +A +IK+AV AT L+CS+G+APNK+LAKI S+L+KP+GLT Sbjct: 140 RGIDEIYIDLSEHAEETHALASRIKNAVQQATGLSCSIGIAPNKLLAKICSDLEKPNGLT 199 Query: 183 ILTPEDIERRIWPLPARKINGIGPKAAEKLAALGIETVADLARASPELLRAHFGRSYSEW 242 ILT DI RIWPLPARKINGIGP+AAEKL ALG+ T+ +LA A LL HFGRSY++W Sbjct: 200 ILTQADIATRIWPLPARKINGIGPRAAEKLTALGLNTIEELAGADATLLHEHFGRSYADW 259 Query: 243 LGRVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRTQLSEIFTTLCVKLAGDLERKG 302 LGRVAQG+D+RPV TYSEPKS+SRETTFE +LHA+ DR L IFT LC ++AGDLERKG Sbjct: 260 LGRVAQGIDERPVVTYSEPKSVSRETTFENNLHAKRDREALGGIFTRLCERVAGDLERKG 319 Query: 303 YVGRTIGIKLKYADFQGVTRDVTLPAPTGDAATIRQAAGECLKRVPLEKKLRLLGVRVGA 362 YVGRT+GIKL++ADF+ VTRD+TLPA T DA IRQAAGECLKR+PL++ RLLGVR+G Sbjct: 320 YVGRTVGIKLRFADFRIVTRDLTLPAYTDDAVAIRQAAGECLKRIPLDQPFRLLGVRIGT 379 Query: 363 LSRKDELALTAQALQAEL 380 L+RKD L LQ EL Sbjct: 380 LARKDSLPAEDPVLQGEL 397 >ref|YP_004752933.1| DNA polymerase IV [Collimonas fungivorans Ter331] gb|AEK62110.1| DNA polymerase IV [Collimonas fungivorans Ter331] Length = 430 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 266/376 (70%), Positives = 309/376 (82%) Query: 5 RRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAGRGVV 64 RRIAHLDMDAFYASVELLRYP+LRGQAVVIGGGS +P DG QY ++RDY GRGVV Sbjct: 51 RRIAHLDMDAFYASVELLRYPELRGQAVVIGGGSRHKPEPGEDGKLQYHKLRDYVGRGVV 110 Query: 65 TTSTYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVRSIAPLIEDRG 124 TTSTYEARA GVFSAMG+MKAA+LAPDAILLPTDFE+YR YSRLFK AV IAPLIEDRG Sbjct: 111 TTSTYEARAFGVFSAMGMMKAAKLAPDAILLPTDFESYRHYSRLFKAAVAEIAPLIEDRG 170 Query: 125 IDEIYIDLSAWPDTAHEVARQIKDAVHAATALTCSVGVAPNKMLAKISSELDKPDGLTIL 184 IDEIY+DLS PD VA++IKDAV AT L+CS+G+APNK+LAKISSEL+KP+GLT++ Sbjct: 171 IDEIYMDLSQHPDDIRVVAQRIKDAVREATGLSCSIGIAPNKLLAKISSELEKPNGLTVI 230 Query: 185 TPEDIERRIWPLPARKINGIGPKAAEKLAALGIETVADLARASPELLRAHFGRSYSEWLG 244 T DI RIWPL ARK+NGIGPKAAEKL ALG+ T+ +LA P +L+ +FGR+YSEWL Sbjct: 231 TEADIPSRIWPLAARKVNGIGPKAAEKLTALGVNTIGELAATDPAVLQENFGRTYSEWLM 290 Query: 245 RVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRTQLSEIFTTLCVKLAGDLERKGYV 304 R + G+DDRPV T SE KSISRETTFERDLHA+ DR L+ IFT LCV+LAGDL+RKGY+ Sbjct: 291 RASHGLDDRPVVTSSETKSISRETTFERDLHAKLDRDTLTPIFTDLCVRLAGDLQRKGYL 350 Query: 305 GRTIGIKLKYADFQGVTRDVTLPAPTGDAATIRQAAGECLKRVPLEKKLRLLGVRVGALS 364 RTIGIKL++ADFQ VTRD+TLP T DA IR AAGECL+RV L+++LRLLGVR AL+ Sbjct: 351 ARTIGIKLRFADFQIVTRDLTLPDATDDATAIRHAAGECLRRVTLDRRLRLLGVRASALT 410 Query: 365 RKDELALTAQALQAEL 380 RK+E +Q EL Sbjct: 411 RKEEAESEPAVMQGEL 426 >ref|YP_004029240.1| DNA polymerase IV [Burkholderia rhizoxinica HKI 454] emb|CBW75096.1| DNA polymerase IV (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 388 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 265/383 (69%), Positives = 306/383 (79%) Query: 1 MANERRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAG 60 M RRIAHLDMDAFYASVELLRYP+LRG+AVVIGGG P LPDGTR++ R+ DYAG Sbjct: 1 MVLTRRIAHLDMDAFYASVELLRYPELRGKAVVIGGGRKAAPQTLPDGTRRFARLGDYAG 60 Query: 61 RGVVTTSTYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVRSIAPLI 120 RGVVTTSTYEARALGVFSAM +MKAAQLAPDAILLPTDF++YR YSRLFK AV + I Sbjct: 61 RGVVTTSTYEARALGVFSAMSMMKAAQLAPDAILLPTDFDSYRHYSRLFKAAVATFTDQI 120 Query: 121 EDRGIDEIYIDLSAWPDTAHEVARQIKDAVHAATALTCSVGVAPNKMLAKISSELDKPDG 180 +DRGIDEIYIDL+A PD +A +IK AV AT LTCS+ VAPNK+LAKI SELDKPDG Sbjct: 121 QDRGIDEIYIDLTALPDDTRALAMRIKQAVRDATGLTCSICVAPNKLLAKIGSELDKPDG 180 Query: 181 LTILTPEDIERRIWPLPARKINGIGPKAAEKLAALGIETVADLARASPELLRAHFGRSYS 240 +TIL+ D+ RIWPLP R++NGIGPKA EKL +LGI TV DLA+A P LL+ HFG SY+ Sbjct: 181 MTILSIADLPTRIWPLPVRRVNGIGPKAGEKLVSLGIATVGDLAKADPGLLQEHFGHSYA 240 Query: 241 EWLGRVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRTQLSEIFTTLCVKLAGDLER 300 WL VA G+D+RPVQ SEPKS+SRETTFERD+H R DR LS IFT LCV++A DL R Sbjct: 241 AWLADVAHGIDERPVQVTSEPKSMSRETTFERDMHVRHDRASLSAIFTDLCVRVAQDLTR 300 Query: 301 KGYVGRTIGIKLKYADFQGVTRDVTLPAPTGDAATIRQAAGECLKRVPLEKKLRLLGVRV 360 KGYVGRT+G+KL+YADF+ VTRDV+LP PT DA IR+AA ECLKRVPL+K+LRLLGVRV Sbjct: 301 KGYVGRTVGLKLRYADFRTVTRDVSLPEPTADAVVIRRAATECLKRVPLDKRLRLLGVRV 360 Query: 361 GALSRKDELALTAQALQAELPFG 383 AL L + +Q +LPF Sbjct: 361 SALRPAHAQRLVREPVQHKLPFA 383 >ref|YP_003607086.1| DNA-directed DNA polymerase [Burkholderia sp. CCGE1002] gb|ADG17575.1| DNA-directed DNA polymerase [Burkholderia sp. CCGE1002] Length = 388 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 268/380 (70%), Positives = 307/380 (80%), Gaps = 1/380 (0%) Query: 5 RRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAGRGVV 64 RRIAHLDMDAFYASVELLRYP+LRG+AVVIGGG + P L DG++++ ++RDYAGRGVV Sbjct: 6 RRIAHLDMDAFYASVELLRYPELRGRAVVIGGGRNSAPQLLEDGSKRFAKLRDYAGRGVV 65 Query: 65 TTSTYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVRSIAPLIEDRG 124 TTSTYEARALGVFSAMG+MKAA LAPDAILLPTDF++YR YSRLFK AVR+ IEDRG Sbjct: 66 TTSTYEARALGVFSAMGMMKAAALAPDAILLPTDFDSYRHYSRLFKAAVRTFTDRIEDRG 125 Query: 125 IDEIYIDLSAWPDTAHEVARQIKDAVHAATALTCSVGVAPNKMLAKISSELDKPDGLTIL 184 IDEIYIDL+ P + ++ R+IK+AVH AT LTCS+ VAPNK+LAKI SELDKPDGLTIL Sbjct: 126 IDEIYIDLTDLPGESADIGRRIKEAVHQATGLTCSICVAPNKLLAKIGSELDKPDGLTIL 185 Query: 185 TPEDIERRIWPLPARKINGIGPKAAEKLAALGIETVADLARASPELLRAHFGRSYSEWLG 244 TP DI R+WPLP RK+NGIGPKAAEKL ALG+ TV DLA A LL+ +FGRSYS WL Sbjct: 186 TPADIPLRVWPLPVRKVNGIGPKAAEKLTALGLATVGDLAAADAGLLQDNFGRSYSAWLM 245 Query: 245 RVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRTQLSEIFTTLCVKLAGDLERKGYV 304 VAQG D+RPV SEPKSISRETTFERDLH R DR LS FT LCV++A DL RKGYV Sbjct: 246 EVAQGQDERPVVVESEPKSISRETTFERDLHPRHDRPALSSAFTGLCVRVADDLVRKGYV 305 Query: 305 GRTIGIKLKYADFQGVTRDVTLPAPTGDAATIRQAAGECLKRVPLEKKLRLLGVRVGALS 364 GRTIGIKL+Y DF+ VTRD+TL PT DA IR+AA ECL+RV L +KLRLLGVR+ LS Sbjct: 306 GRTIGIKLRYDDFRTVTRDLTLDEPTADATEIRRAATECLRRVQLNRKLRLLGVRISTLS 365 Query: 365 RKDELALTAQ-ALQAELPFG 383 E AL + +QA+LPF Sbjct: 366 SASEQALKPRLPVQADLPFA 385