BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5446.p (438 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777704.1| flavoprotein oxidoreductase [Herbaspirillum ... 703 0.0 ref|YP_004848164.1| hypothetical protein NH8B_2959 [Pseudogulben... 535 e-150 ref|ZP_03698805.1| HI0933 family protein [Lutiella nitroferrum 2... 528 e-148 ref|YP_004752341.1| NAD(FAD)-utilizing dehydrogenase [Collimonas... 525 e-147 ref|YP_001893189.1| HI0933 family protein [Ralstonia pickettii 1... 525 e-147 >ref|YP_003777704.1| flavoprotein oxidoreductase [Herbaspirillum seropedicae SmR1] gb|ADJ65796.1| flavoprotein oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 432 Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats. Identities = 370/431 (85%), Positives = 391/431 (90%) Query: 7 MQTLPTLAPGSRRVAVIGAGPAGLMAAEVLAAQGVAVDVYDAMPSAGRKFLLAGRGGMNI 66 MQT A +RVAVIGAGPAGLMAAEVLAA G+AVDVYDAMPSAGRKFLLAG+GGMNI Sbjct: 1 MQTPTPSATDGKRVAVIGAGPAGLMAAEVLAAHGLAVDVYDAMPSAGRKFLLAGKGGMNI 60 Query: 67 THSEPQPDFLPRYGHRREQVAPFVRRFDADQLRAWIHGLGIETFVGSSGRVFPREMKAAP 126 THSEPQPDFLPRYG RREQVAPFVRRFDAD+LRAWIH LGIETFVGSSGRVFPREMKAAP Sbjct: 61 THSEPQPDFLPRYGKRREQVAPFVRRFDADRLRAWIHDLGIETFVGSSGRVFPREMKAAP 120 Query: 127 LLRAWLHRLREAGVRFHMRHRWLGWQEDGALRFAHPDGHTDVQADAVVLALGGASWPRLG 186 LLRAWLHRLREAGVR HMRHRWLGWQ+DG LR AHPDG T V+ADAVVLALGGASWPRLG Sbjct: 121 LLRAWLHRLREAGVRLHMRHRWLGWQQDGTLRLAHPDGETSVRADAVVLALGGASWPRLG 180 Query: 187 SDGSWVPLLQDRQVEVAPLLPSNCGFELDWSEHFRSRFAGEPVKPVVASTALPSGGVQNR 246 SDGSWVPLLQ RQVEVAPLLP+NCGFELDWSEHFR RFAG PVKPVVAS ALPSGG+QNR Sbjct: 181 SDGSWVPLLQARQVEVAPLLPANCGFELDWSEHFRERFAGAPVKPVVASVALPSGGMQNR 240 Query: 247 RGEFIITADGIEGSLVYAMSSALRDTIAAEGSARLYLDLLPDWPLEKVEAELAHPRGARS 306 RGEFIITA GIEG LVYA+SSALR+TIA+EGSARLYLDLLPDW LEKV AEL+HPRGARS Sbjct: 241 RGEFIITAQGIEGGLVYALSSALRETIASEGSARLYLDLLPDWTLEKVSAELSHPRGARS 300 Query: 307 LSSHLQSRLHLKGVKAGLLRELVSKDDFADMGKLARAIKALPLTVWRTRPLAEAISSAGG 366 LSSHLQSRLHLKGVKAGLLREL+ KD FADM KLARAIKALPLTV R RP+AEAISSAGG Sbjct: 301 LSSHLQSRLHLKGVKAGLLRELLDKDTFADMDKLARAIKALPLTVLRPRPIAEAISSAGG 360 Query: 367 VSFEALDDALMLRALPGVFCAGEMLDWEAPTGGYLLTACFATGRAAAAGALHWLISDDRA 426 VSFEALDDALMLRALPGVFCAGEMLDWEAPTGGYLLTACFATG AA G + WL ++ + Sbjct: 361 VSFEALDDALMLRALPGVFCAGEMLDWEAPTGGYLLTACFATGHAAGHGVVQWLKAEGQQ 420 Query: 427 ASLSHSSKEQH 437 A L+ S +E+ Sbjct: 421 AGLNASQEERQ 431 >ref|YP_004848164.1| hypothetical protein NH8B_2959 [Pseudogulbenkiania sp. NH8B] dbj|BAK77750.1| HI0933 family protein [Pseudogulbenkiania sp. NH8B] Length = 418 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 282/412 (68%), Positives = 327/412 (79%), Gaps = 1/412 (0%) Query: 10 LPTLAPG-SRRVAVIGAGPAGLMAAEVLAAQGVAVDVYDAMPSAGRKFLLAGRGGMNITH 68 + T A G SRRVA+IG GPAGLMAAEVL+ QG VDVYDAMPS GRKFLLAG GGMNITH Sbjct: 1 MTTTATGPSRRVAIIGGGPAGLMAAEVLSRQGAQVDVYDAMPSVGRKFLLAGVGGMNITH 60 Query: 69 SEPQPDFLPRYGHRREQVAPFVRRFDADQLRAWIHGLGIETFVGSSGRVFPREMKAAPLL 128 SEP FL RYG+R EQ+ P+++ F +QLR W+HGLGI+TFVGSSGRVFP MKAAPLL Sbjct: 61 SEPAEPFLSRYGNRSEQLRPWLQAFGGEQLREWVHGLGIDTFVGSSGRVFPTAMKAAPLL 120 Query: 129 RAWLHRLREAGVRFHMRHRWLGWQEDGALRFAHPDGHTDVQADAVVLALGGASWPRLGSD 188 RAWL RLREAGVR H+RHRW GW +DGAL + P+G V+ADAV+LALGG SW +LGSD Sbjct: 121 RAWLQRLREAGVRIHVRHRWQGWSDDGALLLSTPEGDKRVRADAVLLALGGGSWAKLGSD 180 Query: 189 GSWVPLLQDRQVEVAPLLPSNCGFELDWSEHFRSRFAGEPVKPVVASTALPSGGVQNRRG 248 G+W+P L +R VEV PL+PSNCGF++ WSEHFRSRFAGEP+K VV S G Q ++G Sbjct: 181 GAWLPRLAERGVEVCPLVPSNCGFDVGWSEHFRSRFAGEPLKSVVLSFTDADGREQRKQG 240 Query: 249 EFIITADGIEGSLVYAMSSALRDTIAAEGSARLYLDLLPDWPLEKVEAELAHPRGARSLS 308 EF++T G+EGSL+YA S+ LRD IAA GSA ++LDL P L +V AE+AHPRG+RSLS Sbjct: 241 EFVVTEGGVEGSLIYAFSAPLRDAIAAHGSATIHLDLAPGKDLARVTAEVAHPRGSRSLS 300 Query: 309 SHLQSRLHLKGVKAGLLRELVSKDDFADMGKLARAIKALPLTVWRTRPLAEAISSAGGVS 368 SHLQSR+ LKGVK GLLRE + KD D +LA AIKALP+T+ RPL EAISS GGV+ Sbjct: 301 SHLQSRVGLKGVKMGLLRECLDKDTMNDPQRLAAAIKALPVTLIAPRPLDEAISSGGGVT 360 Query: 369 FEALDDALMLRALPGVFCAGEMLDWEAPTGGYLLTACFATGRAAAAGALHWL 420 F ALD+ LMLR LPGVFCAGEMLDWEAPTGGYLLTACFA+GRAA G WL Sbjct: 361 FAALDERLMLRQLPGVFCAGEMLDWEAPTGGYLLTACFASGRAAGLGVWEWL 412 >ref|ZP_03698805.1| HI0933 family protein [Lutiella nitroferrum 2002] gb|EEG08104.1| HI0933 family protein [Lutiella nitroferrum 2002] Length = 418 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 279/412 (67%), Positives = 325/412 (78%), Gaps = 1/412 (0%) Query: 10 LPTLAPG-SRRVAVIGAGPAGLMAAEVLAAQGVAVDVYDAMPSAGRKFLLAGRGGMNITH 68 + T A G SRRVA++G GPAGLMAAEVL+ QG VDVYDAMPS GRKFLLAG GGMNITH Sbjct: 1 MTTTATGPSRRVAIVGGGPAGLMAAEVLSRQGAQVDVYDAMPSVGRKFLLAGVGGMNITH 60 Query: 69 SEPQPDFLPRYGHRREQVAPFVRRFDADQLRAWIHGLGIETFVGSSGRVFPREMKAAPLL 128 SEP FL RYG R EQ+ P+++ F +LR W+HGLGI+TFVGSSGRVFP MKAAPLL Sbjct: 61 SEPAEPFLSRYGSRSEQLRPWLQAFGGAELREWVHGLGIDTFVGSSGRVFPTAMKAAPLL 120 Query: 129 RAWLHRLREAGVRFHMRHRWLGWQEDGALRFAHPDGHTDVQADAVVLALGGASWPRLGSD 188 RAWL RLREAGVR H+RHRW GW +DGAL + P+G V+ADAV+LALGG SW +LGSD Sbjct: 121 RAWLQRLREAGVRIHVRHRWQGWSDDGALLLSTPEGDKRVRADAVLLALGGGSWAKLGSD 180 Query: 189 GSWVPLLQDRQVEVAPLLPSNCGFELDWSEHFRSRFAGEPVKPVVASTALPSGGVQNRRG 248 G+W+P L +R VEV PL+PSNCGF++ WSEHFRSRFAGEP+K VV S G Q ++G Sbjct: 181 GAWLPRLAERGVEVCPLVPSNCGFDVGWSEHFRSRFAGEPLKSVVLSFTDADGREQRKQG 240 Query: 249 EFIITADGIEGSLVYAMSSALRDTIAAEGSARLYLDLLPDWPLEKVEAELAHPRGARSLS 308 EF++T G+EGSL+YA S+ LRD IAA GSA ++LDL P L +V AE+AHPRG+RSLS Sbjct: 241 EFVVTEGGVEGSLIYAFSAPLRDAIAAHGSATIHLDLAPGKDLARVTAEVAHPRGSRSLS 300 Query: 309 SHLQSRLHLKGVKAGLLRELVSKDDFADMGKLARAIKALPLTVWRTRPLAEAISSAGGVS 368 SHLQSR+ LKGVK GLLRE + KD +D +LA AIKALP+ + RPL EAISS GGV+ Sbjct: 301 SHLQSRVGLKGVKMGLLRECLDKDTMSDPQRLAAAIKALPVKLIAPRPLDEAISSGGGVT 360 Query: 369 FEALDDALMLRALPGVFCAGEMLDWEAPTGGYLLTACFATGRAAAAGALHWL 420 F ALD+ LMLR LPGVFCAGEMLDWEAPTGGYLLTACFA+GRAA G WL Sbjct: 361 FAALDERLMLRQLPGVFCAGEMLDWEAPTGGYLLTACFASGRAAGLGVWEWL 412 >ref|YP_004752341.1| NAD(FAD)-utilizing dehydrogenase [Collimonas fungivorans Ter331] gb|AEK61518.1| NAD(FAD)-utilizing dehydrogenase [Collimonas fungivorans Ter331] Length = 414 Score = 525 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 274/403 (67%), Positives = 314/403 (77%) Query: 18 RRVAVIGAGPAGLMAAEVLAAQGVAVDVYDAMPSAGRKFLLAGRGGMNITHSEPQPDFLP 77 + VAVIG GPAGLMAAEVLAA G+ V VYDAMPS GRKFLLAG+GGMN+THSE DFL Sbjct: 11 KTVAVIGGGPAGLMAAEVLAAGGMQVHVYDAMPSVGRKFLLAGKGGMNLTHSEAYDDFLS 70 Query: 78 RYGHRREQVAPFVRRFDADQLRAWIHGLGIETFVGSSGRVFPREMKAAPLLRAWLHRLRE 137 RYG RR Q+ P + +F+ D LRAW+H LGI+TF+GSSGRVFP +MKAAPLLRAWLHRLR+ Sbjct: 71 RYGARRPQIVPLLDQFNPDALRAWVHALGIDTFIGSSGRVFPTDMKAAPLLRAWLHRLRQ 130 Query: 138 AGVRFHMRHRWLGWQEDGALRFAHPDGHTDVQADAVVLALGGASWPRLGSDGSWVPLLQD 197 AGV FHMRHRWLGW E GAL F P G V AD+VVLALGG SW RLGSD WVPLL Sbjct: 131 AGVGFHMRHRWLGWNEAGALSFETPQGELAVDADSVVLALGGGSWARLGSDAKWVPLLAR 190 Query: 198 RQVEVAPLLPSNCGFELDWSEHFRSRFAGEPVKPVVASTALPSGGVQNRRGEFIITADGI 257 R+V VAPLLP+NCGFE WS++FR FAG +K V + + ++GEF+ITADG+ Sbjct: 191 REVPVAPLLPANCGFEAAWSDYFREHFAGHHLKSVAIAISENDRPALRKQGEFVITADGV 250 Query: 258 EGSLVYAMSSALRDTIAAEGSARLYLDLLPDWPLEKVEAELAHPRGARSLSSHLQSRLHL 317 EGSL+YA+S+ LRD IAA GSA ++LDLLPDW L++V E+A PRGARS SSHLQSRL L Sbjct: 251 EGSLIYALSAGLRDRIAASGSALIHLDLLPDWSLQRVTDEVARPRGARSWSSHLQSRLGL 310 Query: 318 KGVKAGLLRELVSKDDFADMGKLARAIKALPLTVWRTRPLAEAISSAGGVSFEALDDALM 377 KGVK LLRELV DF LA+AIKALPLT+ RP+ EAISSAGGV FE +D LM Sbjct: 311 KGVKTSLLRELVPAADFGQPLLLAQAIKALPLTLLAARPIDEAISSAGGVRFEGMDQGLM 370 Query: 378 LRALPGVFCAGEMLDWEAPTGGYLLTACFATGRAAAAGALHWL 420 L+ALPGVFCAGEMLDWEAPTGGYLL+ C A+GRAA G L WL Sbjct: 371 LKALPGVFCAGEMLDWEAPTGGYLLSVCLASGRAAGNGVLSWL 413 >ref|YP_001893189.1| HI0933 family protein [Ralstonia pickettii 12J] ref|YP_002983532.1| hypothetical protein Rpic12D_3600 [Ralstonia pickettii 12D] gb|ACD29762.1| HI0933 family protein [Ralstonia pickettii 12J] gb|ACS64860.1| HI0933 family protein [Ralstonia pickettii 12D] Length = 422 Score = 525 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 279/407 (68%), Positives = 328/407 (80%), Gaps = 8/407 (1%) Query: 20 VAVIGAGPAGLMAAEVLAAQGVAVDVYDAMPSAGRKFLLAGRGGMNITHSEPQPDFLPRY 79 VAVIGAGPAGLMAAEVL+ GV V+V+DAMPSAGRKFLLAG GGMNITH+EP FL RY Sbjct: 10 VAVIGAGPAGLMAAEVLSRNGVRVEVFDAMPSAGRKFLLAGIGGMNITHAEPIDAFLGRY 69 Query: 80 GHRREQVAPFVRRFDADQLRAWIHGLGIETFVGSSGRVFPREMKAAPLLRAWLHRLREAG 139 RR+ +AP + F D LRAWIHGLGIETFVGSSGRVFP EMKAAPLLRAWLHRLREAG Sbjct: 70 RTRRDALAPLIEHFSPDALRAWIHGLGIETFVGSSGRVFPTEMKAAPLLRAWLHRLREAG 129 Query: 140 VRFHMRHRWLGW---QEDGALRFAHPDGHTDVQADAVVLALGGASWPRLGSDGSWVPLLQ 196 V+ HMRHRW+GW Q ALRF PDG +QADAVVLA+GGASWPRLGS+G+WVPLL+ Sbjct: 130 VKLHMRHRWIGWGDAQNASALRFETPDGERYMQADAVVLAMGGASWPRLGSNGAWVPLLE 189 Query: 197 DRQVEVAPLLPSNCGFELDWSEHFRSRFAGEPVKPVVASTALPS---GGVQNRRGEFIIT 253 R V+VAPL P+NCGF+ WS HF+ RFAG+PVK V + ALPS G +Q R+GE ++T Sbjct: 190 ARGVQVAPLQPANCGFDASWSAHFQERFAGQPVKSV--AIALPSAEGGPLQFRQGECVVT 247 Query: 254 ADGIEGSLVYAMSSALRDTIAAEGSARLYLDLLPDWPLEKVEAELAHPRGARSLSSHLQS 313 GIEGSL+YA+S+ +RD +AA G+ ++LDL P W ++V EL PRGARS+SSHLQS Sbjct: 248 QTGIEGSLIYALSAPIRDALAAAGTVTVWLDLAPGWSAQRVATELMRPRGARSMSSHLQS 307 Query: 314 RLHLKGVKAGLLRELVSKDDFADMGKLARAIKALPLTVWRTRPLAEAISSAGGVSFEALD 373 +L++ GVK GLLRE +SK+ FAD+ +LARAIKALPLT+ R RP+ EAIS+AGGV+FEALD Sbjct: 308 KLNITGVKLGLLRECLSKEAFADLAQLARAIKALPLTLLRPRPIDEAISTAGGVAFEALD 367 Query: 374 DALMLRALPGVFCAGEMLDWEAPTGGYLLTACFATGRAAAAGALHWL 420 LM+ LPGVFCAGEMLDWEAPTGGYLLTACFA+G AA G L +L Sbjct: 368 ARLMIERLPGVFCAGEMLDWEAPTGGYLLTACFASGAAAGQGVLDYL 414