BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5445.p (247 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777703.1| amino acid ABC transporter permease [Herbasp... 442 e-122 ref|YP_004751533.1| amino acid ABC transporter permease [Collimo... 369 e-100 ref|YP_002796217.1| amino acid ABC transporter, permease protein... 296 1e-78 ref|YP_549540.1| amino acid ABC transporter permease [Polaromona... 291 5e-77 ref|YP_525039.1| amino acid ABC transporter permease [Rhodoferax... 291 5e-77 >ref|YP_003777703.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65795.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 247 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 239/247 (96%), Positives = 245/247 (99%) Query: 1 MDFRWSIIQGYAPLFAKGVLMTLQVSLISILIGTVIGLLVGMLRLADLQHGPWKWPLKLL 60 MDFRWSIIQGYAPLFAKGVLMTLQVSLISILIGTVIGLLVGMLRLA++QHGPWKWPLK + Sbjct: 1 MDFRWSIIQGYAPLFAKGVLMTLQVSLISILIGTVIGLLVGMLRLAEVQHGPWKWPLKSM 60 Query: 61 RWLASFYVAFFRGTPLFVQIMLIHFAVMPLLVQQEHGLLITGELARTIKQDYGAFLSGTV 120 RWLA FYVAFFRGTPLFVQIMLIHFAVMP+LVQQEHGLLITGELARTIKQDYGAFLSGTV Sbjct: 61 RWLAGFYVAFFRGTPLFVQIMLIHFAVMPVLVQQEHGLLITGELARTIKQDYGAFLSGTV 120 Query: 121 ALSLNAGAYISEIFRAGIQSIERGQSYAAASLGMNYGLTMRYVVLPQAFRRMLPPLGNEA 180 ALSLNAGAYISEIFRAGIQSIERGQSYAAASLGMNYGLTMRYVVLPQAFRRMLPPLGNEA Sbjct: 121 ALSLNAGAYISEIFRAGIQSIERGQSYAAASLGMNYGLTMRYVVLPQAFRRMLPPLGNEA 180 Query: 181 ITLLKDSSLVSAIGLAELAYAARTVAGTYARYWEPYITISILYFSMTICLALVVARLENK 240 ITLLKDSSLVSAIGLAELAYAARTVAGTYARYWEPYITIS+LYFSMTICLALVVARLE+K Sbjct: 181 ITLLKDSSLVSAIGLAELAYAARTVAGTYARYWEPYITISVLYFSMTICLALVVARLESK 240 Query: 241 YSAPHRR 247 YSAPHRR Sbjct: 241 YSAPHRR 247 >ref|YP_004751533.1| amino acid ABC transporter permease [Collimonas fungivorans Ter331] gb|AEK60710.1| Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine [Collimonas fungivorans Ter331] Length = 247 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 204/247 (82%), Positives = 232/247 (93%) Query: 1 MDFRWSIIQGYAPLFAKGVLMTLQVSLISILIGTVIGLLVGMLRLADLQHGPWKWPLKLL 60 MDFRWSIIQGYAPLF KG MT+QV++ISI+IGT++GLL+GMLRLA+++HGPWKWP +LL Sbjct: 1 MDFRWSIIQGYAPLFVKGFFMTVQVAVISIIIGTILGLLLGMLRLAEVKHGPWKWPFRLL 60 Query: 61 RWLASFYVAFFRGTPLFVQIMLIHFAVMPLLVQQEHGLLITGELARTIKQDYGAFLSGTV 120 + LASFYVAFFRGTPLFVQI+LIHFAVMP+L+ Q++GLLI+GELARTIKQDYGAF+SG V Sbjct: 61 KGLASFYVAFFRGTPLFVQILLIHFAVMPVLIHQDNGLLISGELARTIKQDYGAFISGIV 120 Query: 121 ALSLNAGAYISEIFRAGIQSIERGQSYAAASLGMNYGLTMRYVVLPQAFRRMLPPLGNEA 180 ALSLNAGAYISEIFRAGIQSI+RGQSYAA+SLGM Y LTMRYVVLPQAFRRMLPPLGNEA Sbjct: 121 ALSLNAGAYISEIFRAGIQSIDRGQSYAASSLGMGYKLTMRYVVLPQAFRRMLPPLGNEA 180 Query: 181 ITLLKDSSLVSAIGLAELAYAARTVAGTYARYWEPYITISILYFSMTICLALVVARLENK 240 ITLLKDSSLVSAIGLAELAYAARTVAG Y+RYWEPYITIS++YF+MT+ LA +V RLE K Sbjct: 181 ITLLKDSSLVSAIGLAELAYAARTVAGAYSRYWEPYITISVVYFAMTMILATLVGRLERK 240 Query: 241 YSAPHRR 247 Y+APH R Sbjct: 241 YAAPHHR 247 >ref|YP_002796217.1| amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine [Laribacter hongkongensis HLHK9] gb|ACO75208.1| amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine [Laribacter hongkongensis HLHK9] Length = 247 Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 159/242 (65%), Positives = 202/242 (83%), Gaps = 1/242 (0%) Query: 1 MDFRWSIIQGYAPLFAKGVLMTLQVSLISILIGTVIGLLVGMLRLADLQHGPWKWPLKL- 59 MDFR+S+I YAPLF GV MTL +++I++++GT+IGL +GM RLAD +HG K+ L+ Sbjct: 1 MDFRFSMIVEYAPLFIDGVKMTLGITVIAVVLGTLIGLFMGMARLADARHGMGKYLLRYC 60 Query: 60 LRWLASFYVAFFRGTPLFVQIMLIHFAVMPLLVQQEHGLLITGELARTIKQDYGAFLSGT 119 ++W A+ YV FFRGTPLFVQI+L+HFA+MP LV G+LI+G+LAR I+Q+YGAF SG Sbjct: 61 VKWPATAYVTFFRGTPLFVQILLVHFALMPTLVHPVDGILISGDLAREIRQNYGAFFSGL 120 Query: 120 VALSLNAGAYISEIFRAGIQSIERGQSYAAASLGMNYGLTMRYVVLPQAFRRMLPPLGNE 179 +AL+LNAGAYI+EIFRAGI SI++GQ AA SLGM+YG MR+VV+PQAFRRMLPPLGNE Sbjct: 121 LALTLNAGAYITEIFRAGILSIDKGQMEAARSLGMSYGQAMRFVVVPQAFRRMLPPLGNE 180 Query: 180 AITLLKDSSLVSAIGLAELAYAARTVAGTYARYWEPYITISILYFSMTICLALVVARLEN 239 AI LLKDSSLVSAIGLAELA+AARTVAG Y+RYWEPY+TIS +Y ++T+ +A +A LE Sbjct: 181 AIMLLKDSSLVSAIGLAELAFAARTVAGVYSRYWEPYLTISFMYLALTMLMAWGIAALEK 240 Query: 240 KY 241 +Y Sbjct: 241 RY 242 >ref|YP_549540.1| amino acid ABC transporter permease [Polaromonas sp. JS666] gb|ABE44642.1| amino acid ABC transporter membrane protein, PAAT family [Polaromonas sp. JS666] Length = 255 Score = 291 bits (746), Expect = 5e-77, Method: Composition-based stats. Identities = 159/240 (66%), Positives = 195/240 (81%), Gaps = 1/240 (0%) Query: 3 FRWSIIQGYAPLFAKGVLMTLQVSLISILIGTVIGLLVGMLRLADLQHGPWKWPLKL-LR 61 FR II YA LF +G+ MT+ V+LI I+ GT +GL +GM RLA +H P + + LR Sbjct: 10 FRADIISEYAVLFWRGLQMTITVTLICIVQGTALGLAIGMARLAQARHAPARQLCQYALR 69 Query: 62 WLASFYVAFFRGTPLFVQIMLIHFAVMPLLVQQEHGLLITGELARTIKQDYGAFLSGTVA 121 W ++ YV+FFRGTPLFVQI+LIHFAV+PL + GLLI+GE AR IKQ+YGAFLSG VA Sbjct: 70 WPSTVYVSFFRGTPLFVQILLIHFAVLPLFINPADGLLISGETARNIKQNYGAFLSGIVA 129 Query: 122 LSLNAGAYISEIFRAGIQSIERGQSYAAASLGMNYGLTMRYVVLPQAFRRMLPPLGNEAI 181 L+LNAGAYISEIFRAGIQSI++GQ A+ SLGM++ TM +VVLPQAFRRMLPPLGN AI Sbjct: 130 LTLNAGAYISEIFRAGIQSIDKGQVEASRSLGMSFPRTMYHVVLPQAFRRMLPPLGNNAI 189 Query: 182 TLLKDSSLVSAIGLAELAYAARTVAGTYARYWEPYITISILYFSMTICLALVVARLENKY 241 +LLKDSSL+SAIGLAELAYAARTVAG Y+RYWEPY+TIS++Y+ +T+ LA VV +LE +Y Sbjct: 190 SLLKDSSLISAIGLAELAYAARTVAGAYSRYWEPYLTISLMYWVLTLGLAYVVKKLEARY 249 >ref|YP_525039.1| amino acid ABC transporter permease [Rhodoferax ferrireducens T118] gb|ABD71508.1| Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine [Rhodoferax ferrireducens T118] Length = 255 Score = 291 bits (746), Expect = 5e-77, Method: Composition-based stats. Identities = 159/240 (66%), Positives = 195/240 (81%), Gaps = 1/240 (0%) Query: 3 FRWSIIQGYAPLFAKGVLMTLQVSLISILIGTVIGLLVGMLRLADLQHGPWKWPLKL-LR 61 FR II YA LF +G+ MT+ V+LI I+ GT +GL +GM RLA+ +H P + K LR Sbjct: 10 FRADIIAEYAVLFWRGLQMTMLVTLICIVQGTALGLAIGMARLAEARHAPARQLCKFALR 69 Query: 62 WLASFYVAFFRGTPLFVQIMLIHFAVMPLLVQQEHGLLITGELARTIKQDYGAFLSGTVA 121 W A+ YV+FFRGTPLFVQI+LIHFAV+PL + GLLI+GE AR +KQ+YGAFLSG +A Sbjct: 70 WPATVYVSFFRGTPLFVQILLIHFAVLPLFINPADGLLISGETARNLKQNYGAFLSGVIA 129 Query: 122 LSLNAGAYISEIFRAGIQSIERGQSYAAASLGMNYGLTMRYVVLPQAFRRMLPPLGNEAI 181 L+LNAGAYISEIFRAGIQSI+RGQ A+ SLG+++ TM +VVLPQAFRRMLPPLGN AI Sbjct: 130 LTLNAGAYISEIFRAGIQSIDRGQVEASRSLGLSFPRTMFHVVLPQAFRRMLPPLGNNAI 189 Query: 182 TLLKDSSLVSAIGLAELAYAARTVAGTYARYWEPYITISILYFSMTICLALVVARLENKY 241 +LLKDSSL+SAIGLAELAYAARTVAG Y+RYWEPY+TIS++Y+ +T+ LA VV LE +Y Sbjct: 190 SLLKDSSLISAIGLAELAYAARTVAGAYSRYWEPYLTISLMYWVLTLGLAYVVKNLEARY 249