BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5444.p (270 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777702.1| amino acid ABC transporter/signal transducti... 464 e-129 ref|YP_004751534.1| family 3 extracellular solute-binding protei... 336 2e-90 ref|YP_004751536.1| glutamine transport system substrate-binding... 290 1e-76 ref|YP_983660.1| extracellular solute-binding protein [Polaromon... 277 1e-72 ref|YP_004154527.1| family 3 extracellular solute-binding protei... 276 2e-72 >ref|YP_003777702.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ65794.1| ABC-type amino acid transport/signal transduction systems, periplasmic component/domain protein [Herbaspirillum seropedicae SmR1] Length = 271 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 261/271 (96%), Positives = 265/271 (97%), Gaps = 1/271 (0%) Query: 1 MIKMFSRHARTLALTAGFVGMLGLAACGKQEDKSAATPAPQAAAA-RVYVVGVESAYAPF 59 MIKMF+RHAR LALTAGFVGMLGLAACGKQEDKSA APQAAA RVYVVGVESAYAPF Sbjct: 1 MIKMFTRHARALALTAGFVGMLGLAACGKQEDKSATAAAPQAAAPARVYVVGVESAYAPF 60 Query: 60 SSENEQKDVVGFDIDVMKALAKKIGIEVKFVPTPFEGFFNFLAQGDRDLLISAITITDER 119 SSENEQKDVVGFDID+MKALAKKIGIEVKFVPTPFEGFFNFLAQGDRDLLISAITITDER Sbjct: 61 SSENEQKDVVGFDIDIMKALAKKIGIEVKFVPTPFEGFFNFLAQGDRDLLISAITITDER 120 Query: 120 KKSVAFSEPYFVATQTIALPAADTKVSKMDDLKPLTVGTQSATSGDELVQQVLGKNSAKI 179 KKSVAFSEPYFVATQTIALPAADTKVSKM+DLKPLTVGTQSATSGDELVQQVLGKNSAKI Sbjct: 121 KKSVAFSEPYFVATQTIALPAADTKVSKMEDLKPLTVGTQSATSGDELVQQVLGKNSAKI 180 Query: 180 KRFDSTPLALKELESGGVDAVVADEPVVKNYIANNPNSKLRTVTDPSFPKEDYGIAVRKD 239 KRFDSTPLALKELESGGVDAVVADEPVVKNYIANNPNSKLRTVTDPSFPKEDYGIAVRKD Sbjct: 181 KRFDSTPLALKELESGGVDAVVADEPVVKNYIANNPNSKLRTVTDPSFPKEDYGIAVRKD 240 Query: 240 DPELLAKINKGLADMKADGSFAAISAQYFGK 270 DPELLAKINKGLA+MKADGSFAAISAQYFGK Sbjct: 241 DPELLAKINKGLAEMKADGSFAAISAQYFGK 271 >ref|YP_004751534.1| family 3 extracellular solute-binding protein [Collimonas fungivorans Ter331] gb|AEK60711.1| extracellular solute-binding protein, family 3 [Collimonas fungivorans Ter331] Length = 264 Score = 336 bits (861), Expect = 2e-90, Method: Composition-based stats. Identities = 181/269 (67%), Positives = 217/269 (80%), Gaps = 8/269 (2%) Query: 1 MIKMFSRHARTLALTAGFVGMLGLAACGKQEDKSAATPAPQAAAARVYVVGVESAYAPFS 60 M KM SR+ L L A + +L + AC K+E+ AA AA +YVVGVESAYAPFS Sbjct: 1 MKKMLSRY---LPLCALSMSLLAVGACSKKEETPAA-----AAKQTLYVVGVESAYAPFS 52 Query: 61 SENEQKDVVGFDIDVMKALAKKIGIEVKFVPTPFEGFFNFLAQGDRDLLISAITITDERK 120 +ENE+K+VVGFDID+MKA+A KIGIEVKF+PTPFEG FNFLAQGDRDLLISAITITDERK Sbjct: 53 AENEKKEVVGFDIDLMKAIAAKIGIEVKFIPTPFEGIFNFLAQGDRDLLISAITITDERK 112 Query: 121 KSVAFSEPYFVATQTIALPAADTKVSKMDDLKPLTVGTQSATSGDELVQQVLGKNSAKIK 180 ++V FSEPYF A+Q IA+P +T V + +DLK + +G QSAT+GDE+VQ ++GKN+ IK Sbjct: 113 QTVDFSEPYFEASQLIAVPQGNTSVKQFNDLKTMKIGVQSATTGDEVVQNLVGKNNPSIK 172 Query: 181 RFDSTPLALKELESGGVDAVVADEPVVKNYIANNPNSKLRTVTDPSFPKEDYGIAVRKDD 240 RFDST LALKELESGGVDAVVAD+PVV+NYI NNP++ VTD FPKE YGIAVRK + Sbjct: 173 RFDSTTLALKELESGGVDAVVADDPVVRNYITNNPSASFHVVTDGGFPKEYYGIAVRKGN 232 Query: 241 PELLAKINKGLADMKADGSFAAISAQYFG 269 ELLAKIN+GLAD+KADGSFA I+ +YFG Sbjct: 233 TELLAKINQGLADVKADGSFAKINEKYFG 261 >ref|YP_004751536.1| glutamine transport system substrate-binding protein [Collimonas fungivorans Ter331] gb|AEK60713.1| glutamine transport system substrate-binding protein [Collimonas fungivorans Ter331] Length = 276 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 153/248 (61%), Positives = 191/248 (77%), Gaps = 6/248 (2%) Query: 22 LGLAACGKQEDKSAATPAPQAAAARVYVVGVESAYAPFSSENEQKDVVGFDIDVMKALAK 81 L LAACGKQE K+AA PAP Y+VG E+ +APF +NEQK++VGFD+DVM A+A Sbjct: 27 LSLAACGKQEPKTAAAPAPTE-----YLVGAEATFAPFEYQNEQKEIVGFDVDVMNAIAD 81 Query: 82 KIGIEVKFVPTPFEGFFNFLAQGDRDLLISAITITDERKKSVAFSEPYFVATQTIALPAA 141 K G ++KFV TPFEG FNFLAQGDRDLL SAITITDERK++V FSEPYF A Q I +P Sbjct: 82 KGGFKIKFVNTPFEGIFNFLAQGDRDLLASAITITDERKQTVDFSEPYFEANQLIVVPK- 140 Query: 142 DTKVSKMDDLKPLTVGTQSATSGDELVQQVLGKNSAKIKRFDSTPLALKELESGGVDAVV 201 ++KV+K DLK + VG QSAT+GDE+VQ+ LGKN+ IKR +S L +KELE GGV+AVV Sbjct: 141 NSKVTKFADLKNMKVGVQSATTGDEIVQKELGKNNPNIKRLESATLVMKELEGGGVEAVV 200 Query: 202 ADEPVVKNYIANNPNSKLRTVTDPSFPKEDYGIAVRKDDPELLAKINKGLADMKADGSFA 261 +D VVKNYI NNP+ R ++DP+F KE YGIAV+K + ELLAK+NKGLA ++ADG++ Sbjct: 201 SDNGVVKNYIKNNPSEGFRLISDPAFSKEYYGIAVKKGNTELLAKVNKGLAAIRADGTYD 260 Query: 262 AISAQYFG 269 I A+YF Sbjct: 261 KIYAKYFA 268 >ref|YP_983660.1| extracellular solute-binding protein [Polaromonas naphthalenivorans CJ2] gb|ABM38739.1| amino acid ABC transporter substrate-binding protein, PAAT family [Polaromonas naphthalenivorans CJ2] Length = 285 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 157/273 (57%), Positives = 203/273 (74%), Gaps = 7/273 (2%) Query: 1 MIKMFSRHARTLALTAGFVGMLGLAACGKQEDKSAATPAPQAAAA----RVYVVGVESAY 56 M + +RH L T+ + L LAACGKQE + A AP A +VYVVG ++AY Sbjct: 1 MPTITTRH--FLKTTSVLLAGLVLAACGKQEPAAPAATAPAATPPAAAAKVYVVGTDAAY 58 Query: 57 APFSSENEQKDVVGFDIDVMKALAKKIGIEVKFVPTPFEGFFNFLAQGDRDLLISAITIT 116 APF S+NE+ ++VGFDIDV+KA A+K GIEVKFV TP+EG FN +AQGDRDLL+SAITIT Sbjct: 59 APFESQNEKGEIVGFDIDVVKAAAQKAGIEVKFVNTPWEGIFNSVAQGDRDLLVSAITIT 118 Query: 117 DERKKSVAFSEPYFVATQTIALPAADTKVSKMDDLKPLTVGTQSATSGDELVQQVLGKNS 176 ER++++ FS PYF A Q IA+ +D+K++K DDLK L VG Q+ T+GDE++ ++ GK+S Sbjct: 119 PERRQTLDFSAPYFDAQQLIAV-KSDSKIAKFDDLKKLKVGVQNGTTGDEVITKLQGKDS 177 Query: 177 AKIKRFDSTPLALKELESGGVDAVVADEPVVKNYIANNPNSKLRTVTDPSFPKEDYGIAV 236 +KRF+STPLALKE+E GGVDAVVAD VV +Y+ANNP SK +T+ D +F E YGIAV Sbjct: 178 PNVKRFESTPLALKEMEGGGVDAVVADNGVVVHYVANNPGSKFKTIADSTFAAEQYGIAV 237 Query: 237 RKDDPELLAKINKGLADMKADGSFAAISAQYFG 269 +K + ELL KIN+GLA +K DGS+A I QYFG Sbjct: 238 KKGNAELLEKINQGLAGIKEDGSYARIYTQYFG 270 >ref|YP_004154527.1| family 3 extracellular solute-binding protein [Variovorax paradoxus EPS] gb|ADU36416.1| extracellular solute-binding protein family 3 [Variovorax paradoxus EPS] Length = 270 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 158/264 (59%), Positives = 200/264 (75%), Gaps = 6/264 (2%) Query: 10 RTLALTAG--FVGMLGLAACGKQEDKSAATPAPQAAAA--RVYVVGVESAYAPFSSENEQ 65 R L LTA VG L LA CGKQE + A + A RV VVG ++AYAPF S+NE+ Sbjct: 5 RRLTLTAASLLVG-LALAGCGKQEAAAPAAASAPPPPAAARVLVVGTDAAYAPFESQNEK 63 Query: 66 KDVVGFDIDVMKALAKKIGIEVKFVPTPFEGFFNFLAQGDRDLLISAITITDERKKSVAF 125 +VVGFDIDV+KA+A+K GIEVKFV TP+EG FN L QGDRDLL+S+ITITDER++++ F Sbjct: 64 GEVVGFDIDVVKAVAQKAGIEVKFVNTPWEGIFNSLDQGDRDLLVSSITITDERRQTMDF 123 Query: 126 SEPYFVATQTIALPAADTKVSKMDDLKPLTVGTQSATSGDELVQQVLGKNSAKIKRFDST 185 S PYF A Q IA+ +D+ V+K DD+K L VG Q+ T+GDE+V ++LGK++ IKRF+ST Sbjct: 124 SPPYFEARQLIAV-KSDSPVAKFDDIKTLKVGVQNGTTGDEVVGKLLGKSNTAIKRFEST 182 Query: 186 PLALKELESGGVDAVVADEPVVKNYIANNPNSKLRTVTDPSFPKEDYGIAVRKDDPELLA 245 PLALKELE+GGV AVVAD VV +Y+ANN +TV+D FP E YGIAV+K + ELLA Sbjct: 183 PLALKELEAGGVQAVVADNGVVAHYLANNAGGGFKTVSDAGFPSEQYGIAVKKGNAELLA 242 Query: 246 KINKGLADMKADGSFAAISAQYFG 269 KI+KGLAD+KADG++A I A +FG Sbjct: 243 KIDKGLADIKADGTYAKIYASHFG 266