BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5441.p (352 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777695.1| membrane protein [Herbaspirillum seropedicae... 516 e-144 ref|YP_004751956.1| hypothetical protein CFU_1301 [Collimonas fu... 306 3e-81 ref|NP_254070.1| hypothetical protein PA5383 [Pseudomonas aerugi... 280 3e-73 dbj|GAA20140.1| putative membrane protein [Pseudomonas aeruginos... 280 4e-73 ref|ZP_04936257.1| conserved hypothetical protein [Pseudomonas a... 279 6e-73 >ref|YP_003777695.1| membrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65787.1| membrane protein [Herbaspirillum seropedicae SmR1] Length = 349 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 324/352 (92%), Positives = 336/352 (95%), Gaps = 3/352 (0%) Query: 1 MRTAIQTSSLPPAAAGLALSGAVAWAAMSLGNIGWLQNHGFSALTVAIVLGILIGNTVYP 60 MRTA QTS L PA AGLALSGA+AWAAMSLGNIGWLQ+HGFSALTVAIVLGI++GNT+YP Sbjct: 1 MRTATQTSPLHPALAGLALSGALAWAAMSLGNIGWLQDHGFSALTVAIVLGIVLGNTIYP 60 Query: 61 RLGAYCGEGVRFSKQTLLRAGIILYGFRLTFQDIAHVGVAGVVIDAAMLLSTFGLAWLVG 120 RLGA CGEGVRFSKQTLLRAGIILYGFRLTFQDIAHVG+AGVVIDAAMLLSTFGLAWLVG Sbjct: 61 RLGASCGEGVRFSKQTLLRAGIILYGFRLTFQDIAHVGLAGVVIDAAMLLSTFGLAWLVG 120 Query: 121 TKLLKLDRDAALLIGAGSSICGAAAVMATEPVLRARSEQVTVAVSTVVIFGSLAIFLYPL 180 TK+LKLDRDAALLIGAGSSICGAAAVMATEPVLRARSEQVTVAVSTVVIFGSLAIFLYPL Sbjct: 121 TKVLKLDRDAALLIGAGSSICGAAAVMATEPVLRARSEQVTVAVSTVVIFGSLAIFLYPL 180 Query: 181 LYTLQAEPVWGLRLPDFGVYIGSTVHEVAQVLAAARSIDQHTADVAVITKMVRVMMLAPF 240 L+TLQAEP WGLRLPDFGVYIGSTVHEVAQVLAAARSIDQHTADVAVITKMVRVMMLAPF Sbjct: 181 LHTLQAEPAWGLRLPDFGVYIGSTVHEVAQVLAAARSIDQHTADVAVITKMVRVMMLAPF 240 Query: 241 LLMLSMKAAPSAAAASGAAQATKKLSIPWFAFAFIGVVVFNSFFPLPAAVNQLVLQADTL 300 LLMLSMKAAP+ SG KLSIPWFAFAFIGVVVFNSFFPLPAA+NQL+LQADTL Sbjct: 241 LLMLSMKAAPT---TSGHQHQHNKLSIPWFAFAFIGVVVFNSFFPLPAALNQLLLQADTL 297 Query: 301 MLAMAMAALGLSTHLSALRSAGIKPMILGAVLFAWLVIGGALVNGALGRLLA 352 MLAMAMAALGLSTHLSALRSAGIKPMILGAVLFAWLV+GGALVNGALGRLLA Sbjct: 298 MLAMAMAALGLSTHLSALRSAGIKPMILGAVLFAWLVVGGALVNGALGRLLA 349 >ref|YP_004751956.1| hypothetical protein CFU_1301 [Collimonas fungivorans Ter331] gb|AEK61133.1| Putative membrane protein [Collimonas fungivorans Ter331] Length = 360 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 211/344 (61%), Positives = 260/344 (75%), Gaps = 2/344 (0%) Query: 11 PPAAAGLALSGAVAWAAMSLGNIGWLQNHGFSALTVAIVLGILIGNTVYPRLGAYCGEGV 70 PP AGLALS +A AA++ I WLQ+HGFSALT+AIVLG+L GN Y R+ C GV Sbjct: 17 PPLLAGLALSALIAAAAIAAARIDWLQSHGFSALTLAIVLGMLAGNLGYQRIAPSCAAGV 76 Query: 71 RFSKQTLLRAGIILYGFRLTFQDIAHVGVAGVVIDAAMLLSTFGLAWLVGTKLLKLDRDA 130 FSKQ LLR GIILYGFRLTFQDI HVG++GV+ID +L STFG+A L+GT++ KLDR+ Sbjct: 77 NFSKQNLLRLGIILYGFRLTFQDIGHVGLSGVLIDVLVLCSTFGMALLLGTRVFKLDRET 136 Query: 131 ALLIGAGSSICGAAAVMATEPVLRARSEQVTVAVSTVVIFGSLAIFLYPLLYTLQAEPVW 190 A+LIGAGSSICGAAAVMATEPVLRA+ QVTVAV+TVV+FGSLAIFLYPLLY L + Sbjct: 137 AMLIGAGSSICGAAAVMATEPVLRAKPAQVTVAVATVVVFGSLAIFLYPLLYQLNLHWQF 196 Query: 191 GLRLPD-FGVYIGSTVHEVAQVLAAARSIDQHTADVAVITKMVRVMMLAPFLLMLSMK-A 248 P +G++ GSTVHEVAQV+AAAR+I A+ AVITKMVRVMMLAPFL++LS + Sbjct: 197 LAASPQAYGIFTGSTVHEVAQVVAAARAISPDAANTAVITKMVRVMMLAPFLMLLSAYIS 256 Query: 249 APSAAAASGAAQATKKLSIPWFAFAFIGVVVFNSFFPLPAAVNQLVLQADTLMLAMAMAA 308 S AA + A +L+IPWFAF F+ +V NS LP+A+ AD ++LAMAMAA Sbjct: 257 KKSCAARKAGSSAQGRLAIPWFAFGFVAIVALNSLHLLPSALVSHANDADNVLLAMAMAA 316 Query: 309 LGLSTHLSALRSAGIKPMILGAVLFAWLVIGGALVNGALGRLLA 352 LG+STH S+LR+AG+KP++ AVLF WL++GGAL+N + R L Sbjct: 317 LGISTHFSSLRTAGVKPLVFAAVLFGWLIVGGALINMLVLRWLG 360 >ref|NP_254070.1| hypothetical protein PA5383 [Pseudomonas aeruginosa PAO1] sp|Q9HTI1|Y5383_PSEAE RecName: Full=UPF0324 membrane protein PA5383 gb|AAG08768.1|AE004951_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Length = 355 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 195/307 (63%), Positives = 226/307 (73%), Gaps = 6/307 (1%) Query: 16 GLALSGAVAWAAMSLGNIGWLQNHGFSALTVAIVLGILIGNTVYPRLGAYCGEGVRFSKQ 75 GL LS A+A A+ LG WLQ++G SALT+AIVLGIL+GNT+YPR+ A GV FSKQ Sbjct: 22 GLLLSAALAGVAILLGRSQWLQHNGISALTLAIVLGILVGNTLYPRIAAGSAAGVGFSKQ 81 Query: 76 TLLRAGIILYGFRLTFQDIAHVGVAGVVIDAAMLLSTFGLAWLVGTKLLKLDRDAALLIG 135 LLRAGIILYG RLTFQDIA VG+ GV++DA ML STFGLA L+GT+L LDR LLIG Sbjct: 82 ILLRAGIILYGLRLTFQDIAGVGLHGVLLDALMLASTFGLACLLGTRLFGLDRTTTLLIG 141 Query: 136 AGSSICGAAAVMATEPVLRARSEQVTVAVSTVVIFGSLAIFLYPLLYTLQAEPVWGLRLP 195 AGSSICGAAAVMATEPV+R R+EQV VAVSTVV+FG+L IFLYP L+ L + WGL Sbjct: 142 AGSSICGAAAVMATEPVVRGRAEQVAVAVSTVVVFGTLGIFLYPALFQLDQD--WGLLPR 199 Query: 196 D---FGVYIGSTVHEVAQVLAAARSIDQHTADVAVITKMVRVMMLAPFLLMLSMKAAPSA 252 D +GVYIG+TVHEVAQV+AA RSI AD AVI KMVRVMMLAPFL++LS A Sbjct: 200 DPGTWGVYIGATVHEVAQVVAAGRSIGIEAADTAVIAKMVRVMMLAPFLILLSAWLARDK 259 Query: 253 AAASGAAQATKKLSIPWFAFAFIGVVVFNSFFPLPAAVNQLVLQADTLMLAMAMAALGLS 312 A + AT K++IPWFA F+ V NS LP A+ V DT +LAMAMA LGL Sbjct: 260 AHRRQHSGAT-KITIPWFAVGFVLVAGLNSLVSLPPALVSHVNDLDTFLLAMAMAGLGLG 318 Query: 313 THLSALR 319 THLSA+R Sbjct: 319 THLSAIR 325 >dbj|GAA20140.1| putative membrane protein [Pseudomonas aeruginosa NCMG1179] Length = 355 Score = 280 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 195/307 (63%), Positives = 226/307 (73%), Gaps = 6/307 (1%) Query: 16 GLALSGAVAWAAMSLGNIGWLQNHGFSALTVAIVLGILIGNTVYPRLGAYCGEGVRFSKQ 75 GL LS A+A A+ LG WLQ++G SALT+AIVLGIL+GNT+YPR+ A GV FSKQ Sbjct: 22 GLLLSAALAGVAILLGRSQWLQHNGISALTLAIVLGILVGNTLYPRIAAGSAAGVGFSKQ 81 Query: 76 TLLRAGIILYGFRLTFQDIAHVGVAGVVIDAAMLLSTFGLAWLVGTKLLKLDRDAALLIG 135 LLRAGIILYG RLTFQDIA VG+ GV++DA ML STFGLA L+GT+L LDR LLIG Sbjct: 82 ILLRAGIILYGLRLTFQDIAGVGLHGVLLDALMLASTFGLACLLGTRLFGLDRTTTLLIG 141 Query: 136 AGSSICGAAAVMATEPVLRARSEQVTVAVSTVVIFGSLAIFLYPLLYTLQAEPVWGLRLP 195 AGSSICGAAAVMATEPV+R R+EQV VAVSTVV+FG+L IFLYP L+ Q + WGL Sbjct: 142 AGSSICGAAAVMATEPVVRGRAEQVAVAVSTVVVFGTLGIFLYPALF--QFDQDWGLLPR 199 Query: 196 D---FGVYIGSTVHEVAQVLAAARSIDQHTADVAVITKMVRVMMLAPFLLMLSMKAAPSA 252 D +GVYIG+TVHEVAQV+AA RSI AD AVI KMVRVMMLAPFL++LS A Sbjct: 200 DPGPWGVYIGATVHEVAQVVAAGRSIGIEAADTAVIAKMVRVMMLAPFLILLSAWLARDK 259 Query: 253 AAASGAAQATKKLSIPWFAFAFIGVVVFNSFFPLPAAVNQLVLQADTLMLAMAMAALGLS 312 A + AT K++IPWFA F+ V NS LP A+ V DT +LAMAMA LGL Sbjct: 260 AHRRQHSGAT-KITIPWFAVGFVLVAGLNSLVSLPPALVSHVNDLDTFLLAMAMAGLGLG 318 Query: 313 THLSALR 319 THLSA+R Sbjct: 319 THLSAIR 325 >ref|ZP_04936257.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gb|EAZ60376.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gb|EGM15191.1| hypothetical protein PA13_23253 [Pseudomonas aeruginosa 138244] gb|AEO77980.1| hypothetical protein PAM18_5503 [Pseudomonas aeruginosa M18] Length = 355 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 209/331 (63%), Positives = 247/331 (74%), Gaps = 6/331 (1%) Query: 16 GLALSGAVAWAAMSLGNIGWLQNHGFSALTVAIVLGILIGNTVYPRLGAYCGEGVRFSKQ 75 GL LS A+A A+ LG WLQ++G SALT+AIVLGI++GNT+YPR+ A GV FSKQ Sbjct: 22 GLLLSAALAGVAILLGRSQWLQHNGISALTLAIVLGIVVGNTLYPRIAAGSAAGVGFSKQ 81 Query: 76 TLLRAGIILYGFRLTFQDIAHVGVAGVVIDAAMLLSTFGLAWLVGTKLLKLDRDAALLIG 135 LLRAGIILYG RLTFQDIA VG+ GV++DA ML STFGLA L+GT+L LDR LLIG Sbjct: 82 ILLRAGIILYGLRLTFQDIAGVGLHGVLLDALMLASTFGLACLLGTRLFGLDRTTTLLIG 141 Query: 136 AGSSICGAAAVMATEPVLRARSEQVTVAVSTVVIFGSLAIFLYPLLYTLQAEPVWGLRLP 195 AGSSICGAAAVMATEPV+R R+EQV VAVSTVV+FG+L IFLYP L+ L + WGL Sbjct: 142 AGSSICGAAAVMATEPVVRGRAEQVAVAVSTVVVFGTLGIFLYPALFQLDQD--WGLLPR 199 Query: 196 D---FGVYIGSTVHEVAQVLAAARSIDQHTADVAVITKMVRVMMLAPFLLMLSMKAAPSA 252 D +GVYIG+TVHEVAQV+AA RSI AD AVI KMVRVMMLAPFL++LS A Sbjct: 200 DPGTWGVYIGATVHEVAQVVAAGRSIGIEAADTAVIAKMVRVMMLAPFLILLSAWLARDK 259 Query: 253 AAASGAAQATKKLSIPWFAFAFIGVVVFNSFFPLPAAVNQLVLQADTLMLAMAMAALGLS 312 A + AT K++IPWFA F+ V NS LP A+ V DT +LAMAMA LGL Sbjct: 260 AHRRQHSGAT-KITIPWFAVGFVLVAGLNSLVSLPPALVSHVNDLDTFLLAMAMAGLGLG 318 Query: 313 THLSALRSAGIKPMILGAVLFAWLVIGGALV 343 THLSA+R AG+KP++L A+LFAWLV+GG L+ Sbjct: 319 THLSAIRRAGLKPLLLAALLFAWLVLGGGLL 349