BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5440.p (309 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777694.1| LysR family transcription regulator protein ... 507 e-142 ref|YP_004751957.1| LysR family transcriptional regulator [Colli... 370 e-100 ref|ZP_01368402.1| hypothetical protein PaerPA_01005561 [Pseudom... 286 2e-75 ref|YP_001351479.1| putative transcriptional regulator [Pseudomo... 286 4e-75 ref|YP_363915.1| LysR family transcriptional regulator [Xanthomo... 285 6e-75 >ref|YP_003777694.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65786.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 507 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 273/299 (91%), Positives = 288/299 (96%) Query: 10 MRITLRQLQIFLAVAQSGSTTAAAGLVALSQSAASAALNELESLLGVQLFDRVGKRLVLN 69 M+ITLRQLQIFLAVAQSGSTTAAA LVALSQSAASAALNELE LLGVQLFDRVGKRLVLN Sbjct: 1 MKITLRQLQIFLAVAQSGSTTAAADLVALSQSAASAALNELEHLLGVQLFDRVGKRLVLN 60 Query: 70 DSGRQLLPQARHMLDAAQTIERQFSDPAAGSDLHLGASTTIGSYLLPAMIAAYRRSHAGA 129 DSGRQLLPQARHMLDAAQTIERQFSDP AGS+LH+GASTTIGSY+LPAMIAAYR+ HAGA Sbjct: 61 DSGRQLLPQARHMLDAAQTIERQFSDPEAGSELHIGASTTIGSYMLPAMIAAYRKDHAGA 120 Query: 130 RVRALVANTADIVEAVVNFEVDAGLIEGPCHADDVQVEPWMTDELIVVAAPKHPIVRARR 189 RVRALVANTADIV+AVVNFEVDAGLIEGPCHADDV+VEPWM DELIVVAAP+HP+V++ R Sbjct: 121 RVRALVANTADIVDAVVNFEVDAGLIEGPCHADDVEVEPWMMDELIVVAAPRHPLVKSGR 180 Query: 190 KITLKMLREADWLLREAGSGTREAVEHALIPYLHHLPSSFEFGNSEAIKRATAEGLGISC 249 KITLK LREA+WLLREAGSGTREAVEHALIPYLHHLPSSFEFGNSEAIKRATAEGLGISC Sbjct: 181 KITLKRLREAEWLLREAGSGTREAVEHALIPYLHHLPSSFEFGNSEAIKRATAEGLGISC 240 Query: 250 LSRSVVEDLIESRKLVELDTPLPTLRRHFYMVVSRHRAPSPSLSALLSFCRDWAKRQAP 308 LSR+VVED+IESRKLVELDTPLPTLRRHFYMVVSRHRAPSPSL ALL FCR WA+RQ P Sbjct: 241 LSRAVVEDMIESRKLVELDTPLPTLRRHFYMVVSRHRAPSPSLGALLGFCRAWAQRQQP 299 >ref|YP_004751957.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK61134.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] Length = 303 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 202/298 (67%), Positives = 243/298 (81%), Gaps = 2/298 (0%) Query: 8 GSMRITLRQLQIFLAVAQSGSTTAAAGLVALSQSAASAALNELESLLGVQLFDRVGKRLV 67 +MR+T+RQLQIFLA+AQSGSTTAAA +ALSQSAASAALNELE+LL +LFDRVGKRL+ Sbjct: 6 ANMRLTIRQLQIFLAIAQSGSTTAAAEQIALSQSAASAALNELENLLDCRLFDRVGKRLI 65 Query: 68 LNDSGRQLLPQARHMLDAAQTIERQFSDP--AAGSDLHLGASTTIGSYLLPAMIAAYRRS 125 LND+GR LLPQA ++DAA+TIE+QF P A G L +G+STTIGSYLLPA+IAAYR+ Sbjct: 66 LNDNGRLLLPQAGQVVDAAKTIEQQFLTPGMAQGGGLQIGSSTTIGSYLLPALIAAYRQQ 125 Query: 126 HAGARVRALVANTADIVEAVVNFEVDAGLIEGPCHADDVQVEPWMTDELIVVAAPKHPIV 185 H+ +VR ++ANTADIV AVVNFEVD GLIEGP HA D+QVEPWM DEL+VVA+P+HP+ Sbjct: 126 HSELQVRVMIANTADIVAAVVNFEVDVGLIEGPSHAADLQVEPWMVDELLVVASPQHPLA 185 Query: 186 RARRKITLKMLREADWLLREAGSGTREAVEHALIPYLHHLPSSFEFGNSEAIKRATAEGL 245 RK+ L LR+A+WLLRE GSGTREAVE AL+P+LHHL S+EFGNSEAIK ATA GL Sbjct: 186 GGDRKVGLAQLRQAEWLLREPGSGTREAVEQALLPHLHHLRQSYEFGNSEAIKHATAAGL 245 Query: 246 GISCLSRSVVEDLIESRKLVELDTPLPTLRRHFYMVVSRHRAPSPSLSALLSFCRDWA 303 GISCLS +VV D ++S +LVEL T LP L RHFY+V SRH+ S L L++CR W+ Sbjct: 246 GISCLSHAVVADFLQSGRLVELKTSLPRLHRHFYLVHSRHKILSLRLMQFLAYCRSWS 303 >ref|ZP_01368402.1| hypothetical protein PaerPA_01005561 [Pseudomonas aeruginosa PACS2] ref|YP_002443356.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] ref|ZP_04931256.1| hypothetical protein PACG_04036 [Pseudomonas aeruginosa C3719] ref|ZP_04936256.1| hypothetical protein PA2G_03720 [Pseudomonas aeruginosa 2192] gb|EAZ55375.1| hypothetical protein PACG_04036 [Pseudomonas aeruginosa C3719] gb|EAZ60375.1| hypothetical protein PA2G_03720 [Pseudomonas aeruginosa 2192] emb|CAW30532.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gb|EGM15192.1| putative transcriptional regulator [Pseudomonas aeruginosa 138244] dbj|GAA20141.1| probable transcriptional regulator [Pseudomonas aeruginosa NCMG1179] gb|AEO77979.1| putative transcriptional regulator [Pseudomonas aeruginosa M18] Length = 297 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 160/292 (54%), Positives = 203/292 (69%), Gaps = 2/292 (0%) Query: 10 MRITLRQLQIFLAVAQSGSTTAAAGLVALSQSAASAALNELESLLGVQLFDRVGKRLVLN 69 M ++ RQLQIF AVA+ GSTTAAA ++LSQSA SAALNELES L +LFDRVGKRL LN Sbjct: 1 MALSFRQLQIFCAVARCGSTTAAAESISLSQSATSAALNELESQLSTRLFDRVGKRLQLN 60 Query: 70 DSGRQLLPQARHMLDAAQTIERQFSDPAA-GSDLHLGASTTIGSYLLPAMIAAYRRSHAG 128 + GR+ LPQA +LD +E+QF+ AA + L + AS+TIG+Y+LP ++A++ R G Sbjct: 61 EVGRRFLPQALRLLDGVAQLEQQFAVSAAPQASLTVAASSTIGNYVLPRLLASFEREQPG 120 Query: 129 ARVRALVANTADIVEAVVNFEVDAGLIEGPCHADDVQVEPWMTDELIVVAAPKHPIVRAR 188 RV A + NT V+ VV F D GLIEGPCH ++VEPW+ D LIVVAAP HP+ +R Sbjct: 121 VRVNASIGNTGSAVQDVVTFAADIGLIEGPCHEPGLRVEPWLEDSLIVVAAPGHPLA-SR 179 Query: 189 RKITLKMLREADWLLREAGSGTREAVEHALIPYLHHLPSSFEFGNSEAIKRATAEGLGIS 248 +++ + LR A WLLRE GSGTRE V HAL+ +LH+L S + G+SEAIK + A GLGIS Sbjct: 180 TQVSREALRRARWLLREPGSGTREEVSHALLGHLHYLEDSLDLGSSEAIKHSVAAGLGIS 239 Query: 249 CLSRSVVEDLIESRKLVELDTPLPTLRRHFYMVVSRHRAPSPSLSALLSFCR 300 CLSR VVE+ + S LVEL + LP LRR FYM+ R + SP CR Sbjct: 240 CLSRWVVEEQLASGALVELRSSLPPLRRRFYMLRQRDKFLSPGFERFWEHCR 291 >ref|YP_001351479.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gb|ABR82792.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 296 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 162/292 (55%), Positives = 203/292 (69%), Gaps = 2/292 (0%) Query: 10 MRITLRQLQIFLAVAQSGSTTAAAGLVALSQSAASAALNELESLLGVQLFDRVGKRLVLN 69 M ++ RQLQIF AVA+SGSTTAAA ++LSQSA SAALNELES L +LFDRVGKRL LN Sbjct: 1 MALSFRQLQIFCAVARSGSTTAAAESISLSQSATSAALNELESQLSTRLFDRVGKRLQLN 60 Query: 70 DSGRQLLPQARHMLDAAQTIERQFSDPAA-GSDLHLGASTTIGSYLLPAMIAAYRRSHAG 128 + GR+ LPQA +LD +E+QF+ AA + L + AS+TIG+Y+LP ++A++ R G Sbjct: 61 EVGRRFLPQALRLLDGVAQLEQQFAASAAPQASLTVAASSTIGNYVLPRLLASFEREQPG 120 Query: 129 ARVRALVANTADIVEAVVNFEVDAGLIEGPCHADDVQVEPWMTDELIVVAAPKHPIVRAR 188 RV A + NT V VV F D GLIEGPCH ++VEPW+ D LIVVAAP HP+ AR Sbjct: 121 VRVDASIGNTGSAVHDVVTFAADIGLIEGPCHEPGLRVEPWLEDSLIVVAAPGHPLA-AR 179 Query: 189 RKITLKMLREADWLLREAGSGTREAVEHALIPYLHHLPSSFEFGNSEAIKRATAEGLGIS 248 +++ + LR A WLLRE GSGTRE V HAL+ +LH+L S + G+SEAIK + A GLGIS Sbjct: 180 TQVSREALRRARWLLREPGSGTREEVSHALLGHLHYLEDSLDLGSSEAIKHSVAAGLGIS 239 Query: 249 CLSRSVVEDLIESRKLVELDTPLPTLRRHFYMVVSRHRAPSPSLSALLSFCR 300 CLSR VVE+ + S LVEL + LP LRR FYM+ R + SP CR Sbjct: 240 CLSRWVVEEQLASGALVELRSSLPPLRRRFYMLRQRDKFLSPGFERFWEHCR 291 >ref|YP_363915.1| LysR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] emb|CAJ23861.1| transcriptional regulator, LysR family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 307 Score = 285 bits (729), Expect = 6e-75, Method: Composition-based stats. Identities = 170/299 (56%), Positives = 214/299 (71%), Gaps = 9/299 (3%) Query: 10 MRITLRQLQIFLAVAQSGSTTAAAGLVALSQSAASAALNELESLLGVQLFDRVGKRLVLN 69 MR+TLRQL IF AVA +GSTTAAA VALSQSA S ALNELESLLGVQLFDR+GKRL+LN Sbjct: 1 MRLTLRQLLIFTAVADTGSTTAAAERVALSQSATSGALNELESLLGVQLFDRIGKRLMLN 60 Query: 70 DSGRQLLPQARHMLDAAQTIERQFSDPAAG-------SDLHLGASTTIGSYLLPAMIAAY 122 D+GR LLPQAR +LD Q IE QF +A + L +GASTTIG+Y+LP++IA+Y Sbjct: 61 DNGRALLPQARALLDGVQQIEGQFGLGSAAAAAAPLLTRLRVGASTTIGNYVLPSLIASY 120 Query: 123 RRSHAGARVRALVANTADIVEAVVNFEVDAGLIEGPCHADDVQVEPWMTDELIVVAAPKH 182 R + GA V ++ NT ++ AV EVD GLIEGPCH D+QV PW DEL++VAAP+H Sbjct: 121 RSAWPGAAVDVVIGNTREVAAAVSRLEVDIGLIEGPCHEADLQVVPWRQDELVIVAAPRH 180 Query: 183 PIVRA--RRKITLKMLREADWLLREAGSGTREAVEHALIPYLHHLPSSFEFGNSEAIKRA 240 + +A + ++ LK LR+A WLLRE GSGTREAVE L+P+LHHL S + G++EAIK+A Sbjct: 181 AVAQAAMQARVPLKALRQAHWLLREPGSGTREAVEQVLLPHLHHLHSDLQPGSTEAIKQA 240 Query: 241 TAEGLGISCLSRSVVEDLIESRKLVELDTPLPTLRRHFYMVVSRHRAPSPSLSALLSFC 299 AEGLG++CLS V+DL+ +LV L T LP L R FY + R + S L ++ C Sbjct: 241 AAEGLGLACLSLCAVQDLVTLGRLVILQTTLPRLTRRFYRIQHRQKRLSGKLQRFVAHC 299