BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5436.p         (68 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABK64019.1| putative LysR transcriptional regulator [Janthino...    67   9e-10
gb|ABK64104.1| putative LysR transcriptional regulator [Janthino...    67   9e-10
ref|YP_004753868.1| LysR family transcriptional regulator [Colli...    61   6e-08
ref|YP_001632270.1| LysR family transcriptional regulator [Borde...    57   6e-07
ref|YP_365627.1| LysR family transcriptional regulator [Xanthomo...    55   3e-06

>gb|ABK64019.1| putative LysR transcriptional regulator [Janthinobacterium lividum]
          Length = 326

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/66 (51%), Positives = 49/66 (74%)

Query: 1   MTAAQAGGGIIQQMSVTLDPALQEGSLVPVLPEWQLAGPDIVALYQPTRRETAKVKVFVA 60
           + AAQAG GI+Q +SV++   L++GSLVPVL  ++ AGPD+ AL+ P +   AKV+VFV 
Sbjct: 251 IAAAQAGCGIVQTLSVSVLQPLRDGSLVPVLQPFRTAGPDVWALFHPRQLRAAKVQVFVD 310

Query: 61  FLQEIF 66
           FL ++F
Sbjct: 311 FLAQVF 316


>gb|ABK64104.1| putative LysR transcriptional regulator [Janthinobacterium lividum]
          Length = 306

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/66 (53%), Positives = 49/66 (74%)

Query: 1   MTAAQAGGGIIQQMSVTLDPALQEGSLVPVLPEWQLAGPDIVALYQPTRRETAKVKVFVA 60
           + AAQAG GI+Q +SV++   L+EGSLVPVL  ++ AGPD+ AL+ P +   AKV+VFV 
Sbjct: 231 IAAAQAGCGIVQALSVSVLQPLREGSLVPVLQPFRTAGPDVWALFHPRQLRAAKVQVFVD 290

Query: 61  FLQEIF 66
           FL ++F
Sbjct: 291 FLAQVF 296


>ref|YP_004753868.1| LysR family transcriptional regulator [Collimonas fungivorans
           Ter331]
 gb|AEK63045.1| transcriptional regulator, LysR family [Collimonas fungivorans
           Ter331]
          Length = 298

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 44/64 (68%)

Query: 3   AAQAGGGIIQQMSVTLDPALQEGSLVPVLPEWQLAGPDIVALYQPTRRETAKVKVFVAFL 62
           AA +G GI+Q ++++L+P ++ G L PVL +W   GP +  +Y  + + +AKV+VFV F+
Sbjct: 231 AAASGAGIVQLLTLSLNPQIRAGLLAPVLADWATPGPPVSVVYHQSHQLSAKVRVFVDFV 290

Query: 63  QEIF 66
            E+F
Sbjct: 291 TELF 294


>ref|YP_001632270.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 emb|CAP44002.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 302

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 43/65 (66%)

Query: 2   TAAQAGGGIIQQMSVTLDPALQEGSLVPVLPEWQLAGPDIVALYQPTRRETAKVKVFVAF 61
           +AA AG G+IQ     L+PALQ G LV VLPEWQ     I ALY   R+ + +V+VFV +
Sbjct: 230 SAALAGCGLIQVPRFRLEPALQAGRLVQVLPEWQCPTLPISALYPFHRQLSPRVRVFVDW 289

Query: 62  LQEIF 66
           ++E++
Sbjct: 290 VRELY 294


>ref|YP_365627.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 emb|CAJ25627.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 307

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 41/61 (67%)

Query: 6   AGGGIIQQMSVTLDPALQEGSLVPVLPEWQLAGPDIVALYQPTRRETAKVKVFVAFLQEI 65
           AG G+I  +   + PA++ G+LVPVL +W+ A  D+   Y P+R+ + KV+VF+ ++ EI
Sbjct: 235 AGLGLIHTLDFMVRPAIERGALVPVLQDWRPAPLDVFIAYAPSRQLSTKVRVFIEWVSEI 294

Query: 66  F 66
           +
Sbjct: 295 Y 295