BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5431.p (384 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777685.1| D-alanyl-D-alanine carboxypeptidase (penicil... 688 0.0 ref|YP_004754858.1| D-alanyl-D-alanine carboxypeptidase [Collimo... 540 e-151 ref|YP_001354938.1| D-alanyl-D-alanine carboxypeptidase [Janthin... 503 e-140 ref|YP_001101230.1| D-alanyl-D-alanine carboxypeptidase [Hermini... 498 e-139 ref|ZP_08274257.1| D-alanyl-D-alanine carboxypeptidase [Oxalobac... 493 e-137 >ref|YP_003777685.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding) transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65777.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding) transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 384 Score = 688 bits (1776), Expect = 0.0, Method: Composition-based stats. Identities = 369/384 (96%), Positives = 376/384 (97%) Query: 1 MKKLLAAFAATVLSLSALTASAQSLPPPTVAAKSWLLLDASANQVIASSDADTRVEPASL 60 MKKLLAA AATVLS+S LTASAQSLPPPTVAAKSWLLLDASANQVIASSD DTRVEPASL Sbjct: 1 MKKLLAALAATVLSISTLTASAQSLPPPTVAAKSWLLLDASANQVIASSDPDTRVEPASL 60 Query: 61 TKLMTAYLAFAALRDKRLSLEQEVNVSVNAWKVDPSSSKMFIEPNKPVSIDNLLYGLISV 120 TKLMTAYLAFAALRDKRLSLEQEV+VSVNAWKVDPSSSKMFIEPNKPVSIDNLLYGLISV Sbjct: 61 TKLMTAYLAFAALRDKRLSLEQEVSVSVNAWKVDPSSSKMFIEPNKPVSIDNLLYGLISV 120 Query: 121 SGNDAAVAVAEAVSGTEDAFVQLMNREAQRQGLTNTHFSNPHGLPSADTYTTARDLAILC 180 SGNDAAVAVAEAVSGTEDAFVQLMNREAQRQGLTNTHFSNPHGLPS DTYTTARDL+ILC Sbjct: 121 SGNDAAVAVAEAVSGTEDAFVQLMNREAQRQGLTNTHFSNPHGLPSPDTYTTARDLSILC 180 Query: 181 RNLINDFPDYYKRYYSVKKFTYNNITQPNRNRLLWLDPTVDGMKTGHTSSAGYSLITSAH 240 RNLINDFP+YYKRYYSVKKFTYNNITQPNRNRLLWLDPTVDGMKTGHTSSAGYSLITSAH Sbjct: 181 RNLINDFPEYYKRYYSVKKFTYNNITQPNRNRLLWLDPTVDGMKTGHTSSAGYSLITSAH 240 Query: 241 RPVPNGERRLISVVIGTVSDQVRTQESQKLLNWGFQNFDAVKLYAKGQAVDTPDVWKGSQ 300 RPVPNGERRLISVVIGTVSDQVRTQESQKLLNWGFQNFDAVKLYAKGQ VDTPDVWKGSQ Sbjct: 241 RPVPNGERRLISVVIGTVSDQVRTQESQKLLNWGFQNFDAVKLYAKGQPVDTPDVWKGSQ 300 Query: 301 SKIKVGFKNDVYITIPKGTADKVKTKLERNDPLIAPISENAKVGTLKVTIDDKTVAELPV 360 KIKVGFKNDVYITIPKGTADKVKTKL+RNDPLIAPI+E AKVGTLKVTIDDKTV ELPV Sbjct: 301 GKIKVGFKNDVYITIPKGTADKVKTKLDRNDPLIAPIAEGAKVGTLKVTIDDKTVTELPV 360 Query: 361 IALESVGPAGFIGRAWDSLRLMFK 384 +ALESVGPAGFIGRAWDSLRLMFK Sbjct: 361 VALESVGPAGFIGRAWDSLRLMFK 384 >ref|YP_004754858.1| D-alanyl-D-alanine carboxypeptidase [Collimonas fungivorans Ter331] gb|AEK64035.1| D-alanyl-D-alanine carboxypeptidase [Collimonas fungivorans Ter331] Length = 381 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 280/384 (72%), Positives = 329/384 (85%), Gaps = 3/384 (0%) Query: 1 MKKLLAAFAATVLSLSALTASAQSLPPPTVAAKSWLLLDASANQVIASSDADTRVEPASL 60 MKK+LAA AATVLS+S A AQ+LPPPTVAAKSWLLLD ++NQV+AS D D R+EPASL Sbjct: 1 MKKILAALAATVLSIS--VAFAQTLPPPTVAAKSWLLLDTTSNQVVASQDPDMRIEPASL 58 Query: 61 TKLMTAYLAFAALRDKRLSLEQEVNVSVNAWKVDPSSSKMFIEPNKPVSIDNLLYGLISV 120 K+MTAY+ F AL+DK+++L+Q VNVSV AWKVDPSSSKMFIEPN PVSI++LLYGL+ V Sbjct: 59 AKIMTAYVVFDALKDKKITLDQMVNVSVRAWKVDPSSSKMFIEPNTPVSINDLLYGLMVV 118 Query: 121 SGNDAAVAVAEAVSGTEDAFVQLMNREAQRQGLTNTHFSNPHGLPSADTYTTARDLAILC 180 SGNDAAVA+AEAV+GTED+FV LMN EA+R G+ +THF NPHGLPSADTY+TARDLA L Sbjct: 119 SGNDAAVALAEAVAGTEDSFVALMNHEAERMGMKSTHFGNPHGLPSADTYSTARDLATLA 178 Query: 181 RNLINDFPDYYKRYYSVKKFTYNNITQPNRNRLLWLDPTVDGMKTGHTSSAGYSLITSAH 240 ++I DFP++YK S KK+TYN ITQPNRNRLLWLDPTVDGMKTGHTSSAGYS+I SA Sbjct: 179 AHVIVDFPEFYK-IDSTKKYTYNKITQPNRNRLLWLDPTVDGMKTGHTSSAGYSIIASAK 237 Query: 241 RPVPNGERRLISVVIGTVSDQVRTQESQKLLNWGFQNFDAVKLYAKGQAVDTPDVWKGSQ 300 RP G+RRL++VVIGT SD RTQE+QKLLNWGFQNFDAVKLYAKGQA+DTP VWKG++ Sbjct: 238 RPNAGGDRRLLAVVIGTNSDGTRTQEAQKLLNWGFQNFDAVKLYAKGQAIDTPQVWKGAK 297 Query: 301 SKIKVGFKNDVYITIPKGTADKVKTKLERNDPLIAPISENAKVGTLKVTIDDKTVAELPV 360 S+IK+GF +DVY+T+PKG ADK+K LER DPLIAPI +NAKVGT+KV D KT+AE PV Sbjct: 298 SQIKIGFTHDVYVTVPKGIADKIKPVLERTDPLIAPIQQNAKVGTVKVNADGKTIAEFPV 357 Query: 361 IALESVGPAGFIGRAWDSLRLMFK 384 +ALE V A GRAWDS+RL+FK Sbjct: 358 VALEDVAQATIFGRAWDSIRLLFK 381 >ref|YP_001354938.1| D-alanyl-D-alanine carboxypeptidase [Janthinobacterium sp. Marseille] gb|ABR89520.1| D-alanyl-D-alanine carboxypeptidase (peptidase family s11) [Janthinobacterium sp. Marseille] Length = 382 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 263/382 (68%), Positives = 318/382 (83%), Gaps = 4/382 (1%) Query: 1 MKKLLAAFAATVLSLSALTASAQSLPPPTVAAKSWLLLDASANQVIASSDADTRVEPASL 60 MKKLLAA AATVLSLS +A AQS+P PT+ AKSWLLLDA++NQV+AS++ D R+EPASL Sbjct: 1 MKKLLAAIAATVLSLS--SAFAQSVPSPTINAKSWLLLDATSNQVLASNEPDMRIEPASL 58 Query: 61 TKLMTAYLAFAALRDKRLSLEQEVNVSVNAWKVDPSSSKMFIEPNKPVSIDNLLYGLISV 120 TKLMTAY+AF A++DK+L L Q + +S NAWKVDPSSSKMFIEP PV +++LLYGLI Sbjct: 59 TKLMTAYVAFTAIQDKKLDLNQMITISTNAWKVDPSSSKMFIEPRVPVKVNDLLYGLIVQ 118 Query: 121 SGNDAAVAVAEAVSGTEDAFVQLMNREAQRQGLTNTHFSNPHGLPSADTYTTARDLAILC 180 SGNDAAVA+AEAV+GTEDAFV LMNREA+R G+ +THF+NPHGLPSA Y+TARDL++L Sbjct: 119 SGNDAAVAIAEAVAGTEDAFVALMNREAERMGMKSTHFANPHGLPSASNYSTARDLSVLA 178 Query: 181 RNLINDFPDYYKRYYSVKKFTYNNITQPNRNRLLWLDPTVDGMKTGHTSSAGYSLITSAH 240 +LIND P++YK YS K++TYNNI QPNRNRLLWLDPTVDGMKTG+T AGY LI++A Sbjct: 179 SHLINDHPEFYK-IYSTKEYTYNNIKQPNRNRLLWLDPTVDGMKTGYTQGAGYCLISTAK 237 Query: 241 RPVPNGERRLISVVIGTVSDQVRTQESQKLLNWGFQNFDAVKLYAKGQAVDTPDVWKGSQ 300 RP GERRLISVV+GT+SDQ R QESQKLLNWGF NFD VKLYAK + + TP+VWKG+Q Sbjct: 238 RPNGTGERRLISVVLGTISDQARAQESQKLLNWGFLNFDTVKLYAKNEPIATPNVWKGTQ 297 Query: 301 SKIKVGFKNDVYITIPKGTADKVKTKLERNDPLIAPISENAKVGTLKV-TIDDKTVAELP 359 + IK+GF DVYIT+PKG A+ +K L R DPL+API +N++VGT+KV + D K V+ELP Sbjct: 298 NSIKIGFTRDVYITVPKGVANTMKPVLARKDPLVAPIDKNSQVGTIKVMSADGKVVSELP 357 Query: 360 VIALESVGPAGFIGRAWDSLRL 381 V+ALE VG AG GRA DS+RL Sbjct: 358 VLALEQVGQAGLFGRALDSIRL 379 >ref|YP_001101230.1| D-alanyl-D-alanine carboxypeptidase [Herminiimonas arsenicoxydans] emb|CAL63109.1| Putative penicillin-binding (D-alanyl-d-alanine carboxypeptidase) transmembrane protein [Herminiimonas arsenicoxydans] Length = 382 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 261/382 (68%), Positives = 317/382 (82%), Gaps = 4/382 (1%) Query: 1 MKKLLAAFAATVLSLSALTASAQSLPPPTVAAKSWLLLDASANQVIASSDADTRVEPASL 60 MKKL AA A VLSLS TA AQ +P PT+AAKSWLLLDA++NQ++AS++AD R+EPASL Sbjct: 1 MKKLFAALAVAVLSLS--TAFAQVVPAPTIAAKSWLLLDATSNQILASNEADVRIEPASL 58 Query: 61 TKLMTAYLAFAALRDKRLSLEQEVNVSVNAWKVDPSSSKMFIEPNKPVSIDNLLYGLISV 120 TKLMTAY+AF+A++DKR++L Q + VS NAWKVDP SSKMFIEP PVS+++LLYGLI Sbjct: 59 TKLMTAYVAFSAIQDKRIALNQMITVSTNAWKVDPESSKMFIEPRVPVSVNDLLYGLIVQ 118 Query: 121 SGNDAAVAVAEAVSGTEDAFVQLMNREAQRQGLTNTHFSNPHGLPSADTYTTARDLAILC 180 SGNDAAVA+AEAV+GTEDAF LMNREA+R G+ +T F+NPHGLPS + Y+TARDLA+L Sbjct: 119 SGNDAAVALAEAVAGTEDAFAALMNREAERMGMKSTRFANPHGLPSPNNYSTARDLAVLA 178 Query: 181 RNLINDFPDYYKRYYSVKKFTYNNITQPNRNRLLWLDPTVDGMKTGHTSSAGYSLITSAH 240 +L++D P++YK YS K FTYN I Q NRNRLLWLDPTVDGMKTG+T +AGY LI++A Sbjct: 179 THLVSDHPEFYK-IYSTKDFTYNKIKQSNRNRLLWLDPTVDGMKTGYTQNAGYCLISTAK 237 Query: 241 RPVPNGERRLISVVIGTVSDQVRTQESQKLLNWGFQNFDAVKLYAKGQAVDTPDVWKGSQ 300 RP ERRLISVVIGT SDQ R QESQKLLNWGFQNFDAVKLY+K A+DTP+VWKGSQ Sbjct: 238 RPNGANERRLISVVIGTASDQARAQESQKLLNWGFQNFDAVKLYSKDVAIDTPNVWKGSQ 297 Query: 301 SKIKVGFKNDVYITIPKGTADKVKTKLERNDPLIAPISENAKVGTLKV-TIDDKTVAELP 359 +KIK+GF DV++T+PKG A K+K L R DPL+API +N+ VGT+KV + ++K +AELP Sbjct: 298 NKIKIGFTRDVFVTVPKGMAGKIKPVLARKDPLVAPIDKNSPVGTVKVMSAENKVIAELP 357 Query: 360 VIALESVGPAGFIGRAWDSLRL 381 V+ALE VGPAG GRA DS+RL Sbjct: 358 VLALEQVGPAGMFGRALDSIRL 379 >ref|ZP_08274257.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32266.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacteraceae bacterium IMCC9480] Length = 403 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 255/384 (66%), Positives = 310/384 (80%), Gaps = 4/384 (1%) Query: 1 MKKLLAAFAATVLSLSAL---TASAQSLPPPTVAAKSWLLLDASANQVIASSDADTRVEP 57 MK +AA AATV+SLS++ ASAQ++P P VAAKSWLLLD ++ QV+AS D R+EP Sbjct: 18 MKIFIAALAATVISLSSVFVQPASAQTMPAPIVAAKSWLLLDTTSGQVLASQDPTMRIEP 77 Query: 58 ASLTKLMTAYLAFAALRDKRLSLEQEVNVSVNAWKVDPSSSKMFIEPNKPVSIDNLLYGL 117 ASLTK+MTAY+ F A+++KRL L Q VNVSV AWKVDPSSSKMFI+P PVS+D+LL+GL Sbjct: 78 ASLTKIMTAYVTFQAIKEKRLDLAQMVNVSVRAWKVDPSSSKMFIDPATPVSVDDLLHGL 137 Query: 118 ISVSGNDAAVAVAEAVSGTEDAFVQLMNREAQRQGLTNTHFSNPHGLPSADTYTTARDLA 177 + SGNDAAVA+AEAV+GTE+AFV LMNREA+R GLTNT F NPHGLPS Y+TA+DL+ Sbjct: 138 MVQSGNDAAVALAEAVAGTEEAFVVLMNREAKRMGLTNTQFGNPHGLPSQSNYSTAQDLS 197 Query: 178 ILCRNLINDFPDYYKRYYSVKKFTYNNITQPNRNRLLWLDPTVDGMKTGHTSSAGYSLIT 237 L +I D+P++YK SVK FTYN ITQPNRNRLLWLDP+VDGMKTGHT +AGY +I Sbjct: 198 KLAAAVITDYPEFYK-IDSVKSFTYNKITQPNRNRLLWLDPSVDGMKTGHTEAAGYCIIA 256 Query: 238 SAHRPVPNGERRLISVVIGTVSDQVRTQESQKLLNWGFQNFDAVKLYAKGQAVDTPDVWK 297 SA RP +GERRLISVV+G SDQ RTQESQKLLNWGFQNFD VKLY KGQ V+TP VWK Sbjct: 257 SAKRPNGSGERRLISVVLGANSDQSRTQESQKLLNWGFQNFDTVKLYGKGQPVETPPVWK 316 Query: 298 GSQSKIKVGFKNDVYITIPKGTADKVKTKLERNDPLIAPISENAKVGTLKVTIDDKTVAE 357 GS+ IK+GF D+Y+T+ KG A K+K LER DPL+API+ N+KVG +K+ +D K++AE Sbjct: 317 GSEKTIKIGFTQDIYVTVAKGVAAKMKPVLERKDPLVAPIAANSKVGMMKMMVDGKSIAE 376 Query: 358 LPVIALESVGPAGFIGRAWDSLRL 381 P++ALE+V AG GRAWDS+RL Sbjct: 377 FPILALENVNEAGIFGRAWDSIRL 400