BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5429.p         (116 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777683.1| ferredoxin [2Fe-2S]-type protein [Herbaspiri...   204   5e-51
ref|YP_004754856.1| putative ferredoxin [Collimonas fungivorans ...   185   2e-45
ref|ZP_04940404.1| hypothetical protein BCPG_01861 [Burkholderia...   160   5e-38
ref|YP_774835.1| ferredoxin-like protein [Burkholderia ambifaria...   159   1e-37
ref|ZP_02377701.1| Ferredoxin-like protein [Burkholderia ubonens...   159   1e-37

>ref|YP_003777683.1| ferredoxin [2Fe-2S]-type protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65775.1| ferredoxin [2Fe-2S]-type protein [Herbaspirillum seropedicae SmR1]
          Length = 106

 Score =  204 bits (518), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 101/104 (97%), Positives = 103/104 (99%)

Query: 13  EQPYYEHHVFFCLNQRKPGERTCCADKGAQAAQEHAKKRIKQLGLSAPGKVRINKAGCLE 72
           +QPYYEHHVFFCLNQR+PGERTCCADKGAQAAQEHAKKRIKQLGLSAPGKVRINKAGCLE
Sbjct: 3   DQPYYEHHVFFCLNQRQPGERTCCADKGAQAAQEHAKKRIKQLGLSAPGKVRINKAGCLE 62

Query: 73  RCEEGPVVVIYPQGTWYTYVDNEDIDEIIDSHIVGGKVVDRLKI 116
           RCEEGPVVVIYPQGTWYTYVD EDIDEIIDSHIVGGKVVDRLKI
Sbjct: 63  RCEEGPVVVIYPQGTWYTYVDKEDIDEIIDSHIVGGKVVDRLKI 106


>ref|YP_004754856.1| putative ferredoxin [Collimonas fungivorans Ter331]
 gb|AEK64033.1| Putative ferredoxin [Collimonas fungivorans Ter331]
          Length = 120

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 85/104 (81%), Positives = 97/104 (93%)

Query: 13  EQPYYEHHVFFCLNQRKPGERTCCADKGAQAAQEHAKKRIKQLGLSAPGKVRINKAGCLE 72
           ++P+YEHHVFFCLNQR+PGER CCA+ GAQAAQEHAK+R+KQLGL+  GKVRINKAGCLE
Sbjct: 17  DKPFYEHHVFFCLNQREPGERVCCANAGAQAAQEHAKRRVKQLGLAGEGKVRINKAGCLE 76

Query: 73  RCEEGPVVVIYPQGTWYTYVDNEDIDEIIDSHIVGGKVVDRLKI 116
           RCEEGP +VIYP+G WYTYVDNEDIDEIID HIVGGK+V+RLKI
Sbjct: 77  RCEEGPALVIYPEGVWYTYVDNEDIDEIIDVHIVGGKIVERLKI 120


>ref|ZP_04940404.1| hypothetical protein BCPG_01861 [Burkholderia cenocepacia PC184]
 gb|EAY63575.1| hypothetical protein BCPG_01861 [Burkholderia cenocepacia PC184]
          Length = 151

 Score =  160 bits (405), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 76/102 (74%), Positives = 89/102 (87%), Gaps = 1/102 (0%)

Query: 16  YYEHHVFFCLNQRKPG-ERTCCADKGAQAAQEHAKKRIKQLGLSAPGKVRINKAGCLERC 74
           YY+HHVFFCLNQR+PG ER  CA   AQ  QE+AKKR+K+LGL+ PGKVRINKAGCL+RC
Sbjct: 50  YYQHHVFFCLNQREPGAERPSCAQCDAQTMQEYAKKRVKELGLAGPGKVRINKAGCLDRC 109

Query: 75  EEGPVVVIYPQGTWYTYVDNEDIDEIIDSHIVGGKVVDRLKI 116
           EEGPV+V+YP+GTWYTYVD  DIDEI++SH+  GKVVDRLKI
Sbjct: 110 EEGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGKVVDRLKI 151


>ref|YP_774835.1| ferredoxin-like protein [Burkholderia ambifaria AMMD]
 gb|ABI88501.1| ferredoxin-like protein [Burkholderia ambifaria AMMD]
          Length = 105

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/102 (75%), Positives = 89/102 (87%), Gaps = 1/102 (0%)

Query: 16  YYEHHVFFCLNQRKPG-ERTCCADKGAQAAQEHAKKRIKQLGLSAPGKVRINKAGCLERC 74
           YY+HHVFFCLNQR PG ER  CA   AQA QE+AKKR+K+LGL+ PGKVRINKAGCL+RC
Sbjct: 4   YYQHHVFFCLNQRDPGAERPSCAQCNAQAMQEYAKKRVKELGLAGPGKVRINKAGCLDRC 63

Query: 75  EEGPVVVIYPQGTWYTYVDNEDIDEIIDSHIVGGKVVDRLKI 116
           EEGPV+V+YP+GTWYTYVD  DIDEI++SH+  GKVVDRLKI
Sbjct: 64  EEGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGKVVDRLKI 105


>ref|ZP_02377701.1| Ferredoxin-like protein [Burkholderia ubonensis Bu]
          Length = 105

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/102 (75%), Positives = 90/102 (88%), Gaps = 1/102 (0%)

Query: 16  YYEHHVFFCLNQRKPG-ERTCCADKGAQAAQEHAKKRIKQLGLSAPGKVRINKAGCLERC 74
           YY+HHVFFCLNQR+PG ER  CA   AQA QE+AKKR+K+LGL+ PGKVRINKAGCL+RC
Sbjct: 4   YYQHHVFFCLNQREPGAERPSCAQCDAQAMQEYAKKRVKELGLAGPGKVRINKAGCLDRC 63

Query: 75  EEGPVVVIYPQGTWYTYVDNEDIDEIIDSHIVGGKVVDRLKI 116
           EEGPV+V+YP+GTWYTYVD  DIDEI++SH+  GKVVDRLKI
Sbjct: 64  EEGPVMVVYPEGTWYTYVDRADIDEIVESHLRDGKVVDRLKI 105