BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5418.p (331 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777674.1| site-specific integrase/recombinase [Herbasp... 491 e-137 ref|YP_001354893.1| site specific integrase/recombinase protein ... 377 e-102 ref|YP_004754683.1| tyrosine recombinase xerC [Collimonas fungiv... 371 e-101 emb|CAL63069.2| Tyrosine recombinase xerC [Herminiimonas arsenic... 365 5e-99 ref|YP_001101190.1| tyrosine recombinase xerC [Herminiimonas ars... 353 2e-95 >ref|YP_003777674.1| site-specific integrase/recombinase [Herbaspirillum seropedicae SmR1] gb|ADJ65766.1| site-specific integrase/recombinase protein [Herbaspirillum seropedicae SmR1] Length = 330 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 263/323 (81%), Positives = 285/323 (88%), Gaps = 2/323 (0%) Query: 9 SSLIGQYLSFLRSQRKLSPHTLDSYARDLQELRALLAPADDHDGVADSTLPHVSQAQIRK 68 + LIGQYLSFLR+QRKLS HT++ Y RDLQELR+LLAPA + AD L +Q QIRK Sbjct: 10 TGLIGQYLSFLRTQRKLSDHTVEHYGRDLQELRSLLAPAGEEH--ADIDLRKTTQVQIRK 67 Query: 69 CAARLHARGLNARSISRKLSAWRGLFAWLAVEQAMPANPVDGVKPPKKSKPLPKALPADE 128 CAARLHARGLNARSI+RKLSAWRG F WL+++ + ANPVDGVK PKKSKPLPKAL AD+ Sbjct: 68 CAARLHARGLNARSIARKLSAWRGFFGWLSMQMDLAANPVDGVKAPKKSKPLPKALAADD 127 Query: 129 AIRLVSQADPARDPDSTLAACNRAMFELLYSSGLRVSELAGIDVKDVREGTYESAGWIDL 188 AIRLVSQ DP RDPDSTLAACNRAMFELLYSSGLRVSEL GIDV DVREG YESAGW+DL Sbjct: 128 AIRLVSQPDPVRDPDSTLAACNRAMFELLYSSGLRVSELVGIDVADVREGGYESAGWVDL 187 Query: 189 EEAEVTVTGKGGKRRKVPVGQAALQAIRDWLPLRASLVKADGGMDGHALFLNERGARMSP 248 EEAEVTVTGKGGK+RKVPVGQAA A+ DWLPLRA L KADGG D HALFLNERGAR+SP Sbjct: 188 EEAEVTVTGKGGKKRKVPVGQAARAALADWLPLRARLRKADGGPDSHALFLNERGARISP 247 Query: 249 RVTQLRLKAHGKSVEMPADVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYTA 308 RV QLRLKAHG+++EM +DVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYTA Sbjct: 248 RVAQLRLKAHGRALEMASDVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYTA 307 Query: 309 LDFQRLAQVYDQAHPRAKKIAGK 331 LDFQRLAQVYDQAHPRA+K GK Sbjct: 308 LDFQRLAQVYDQAHPRARKNGGK 330 >ref|YP_001354893.1| site specific integrase/recombinase protein [Janthinobacterium sp. Marseille] gb|ABR89751.1| site specific integrase/recombinase protein [Janthinobacterium sp. Marseille] Length = 319 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 202/313 (64%), Positives = 243/313 (77%), Gaps = 9/313 (2%) Query: 15 YLSFLRSQRKLSPHTLDSYARDLQELRALLAPADDHDGVADSTLPHVSQAQIRKCAARLH 74 YL L SQR+L+P T SY RDL EL A +D + +TL V+ QIRK AA+LH Sbjct: 13 YLDNLISQRQLAPLTTVSYRRDLLELLAFATASD-----SKATLTGVTHFQIRKFAAQLH 67 Query: 75 ARGLNARSISRKLSAWRGLFAWLAVEQAMPANPVDGVKPPKKSKPLPKALPADEAIRLVS 134 A+GLNARSI+RKLSAWRG F WL+ + A+ +NPVDG+K PK+SKPLPKAL AD+A+RLV+ Sbjct: 68 AQGLNARSIARKLSAWRGFFTWLSEQNAITSNPVDGIKAPKRSKPLPKALAADDAVRLVA 127 Query: 135 QADPARDPDSTLAACNRAMFELLYSSGLRVSELAGIDVKDVREGTYESAGWIDLEEAEVT 194 + P + DS + CN AMFELLYSSGLRVSEL G+DV+ +E Y SAGWID + EV Sbjct: 128 EHAPGKSADSAMQLCNHAMFELLYSSGLRVSELVGLDVRYAQEARYTSAGWIDFDAHEVM 187 Query: 195 VTGKGGKRRKVPVGQAALQAIRDWLPLRASLVKADGGMDGHALFLNERGARMSPRVTQLR 254 VTGKG K R VP+GQAA+ A++ WL +R +LVK +D H LFL+ERG R+S RV QLR Sbjct: 188 VTGKGNKMRTVPIGQAAMDALKAWLAVRDTLVK----LDPHPLFLSERGTRVSARVVQLR 243 Query: 255 LKAHGKSVEMPADVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYTALDFQRL 314 LKAHG+++ +P DVHPH+LRHSFASHVLQSSGDLRAVQEMLGHASI ATQ+YT+LDFQRL Sbjct: 244 LKAHGQAIGLPTDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASIAATQIYTSLDFQRL 303 Query: 315 AQVYDQAHPRAKK 327 AQVYD AHPRAKK Sbjct: 304 AQVYDAAHPRAKK 316 >ref|YP_004754683.1| tyrosine recombinase xerC [Collimonas fungivorans Ter331] gb|AAT42408.1| site-specific recombinase XerC [Collimonas fungivorans Ter331] gb|AEK63860.1| Tyrosine recombinase xerC [Collimonas fungivorans Ter331] Length = 324 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 202/317 (63%), Positives = 245/317 (77%), Gaps = 5/317 (1%) Query: 15 YLSFLRSQRKLSPHTLDSYARDLQELRALLAPADDHDGVADSTLPHVSQAQIRKCAARLH 74 YL L QR+LS HT+ +Y RDL+EL +L D+ A T H IRK AA+LH Sbjct: 13 YLDSLAGQRQLSAHTISNYGRDLKELASLTQALGDNWQFAAITHFH-----IRKFAAQLH 67 Query: 75 ARGLNARSISRKLSAWRGLFAWLAVEQAMPANPVDGVKPPKKSKPLPKALPADEAIRLVS 134 +RGLN SI+RKLSAWRG F WLA + + +NPV+GVK PK++KPLPKA+ AD+AI LV+ Sbjct: 68 SRGLNPSSIARKLSAWRGFFEWLAEQTTLASNPVEGVKAPKRTKPLPKAMAADDAIHLVA 127 Query: 135 QADPARDPDSTLAACNRAMFELLYSSGLRVSELAGIDVKDVREGTYESAGWIDLEEAEVT 194 +P D S++A CN+AMFELLYSSGLRVSELAG+D+ R+ +ESAGWIDL+ AEVT Sbjct: 128 SGNPLADAGSSMALCNQAMFELLYSSGLRVSELAGLDLHYSRQPDHESAGWIDLDAAEVT 187 Query: 195 VTGKGGKRRKVPVGQAALQAIRDWLPLRASLVKADGGMDGHALFLNERGARMSPRVTQLR 254 VTGKGGK+R VPVG+ A+QAI WLP RA+L+K+D G ALFL ERG R+SPRV QLR Sbjct: 188 VTGKGGKKRSVPVGKPAIQAIAAWLPQRAALLKSDQGEHAAALFLTERGTRVSPRVVQLR 247 Query: 255 LKAHGKSVEMPADVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYTALDFQRL 314 LK H +S+ + ++VHPH+LRHSFASH+LQ SGDLRAVQE+LGHASI ATQVYT+LDFQRL Sbjct: 248 LKHHAQSLGIASNVHPHVLRHSFASHMLQGSGDLRAVQELLGHASIAATQVYTSLDFQRL 307 Query: 315 AQVYDQAHPRAKKIAGK 331 AQVYD AHPRAKKI K Sbjct: 308 AQVYDAAHPRAKKITDK 324 >emb|CAL63069.2| Tyrosine recombinase xerC [Herminiimonas arsenicoxydans] Length = 318 Score = 365 bits (937), Expect = 5e-99, Method: Composition-based stats. Identities = 199/313 (63%), Positives = 242/313 (77%), Gaps = 9/313 (2%) Query: 15 YLSFLRSQRKLSPHTLDSYARDLQELRALLAPADDHDGVADSTLPHVSQAQIRKCAARLH 74 YL L SQR+LSP T+ SY RDL EL AL +D ++ L +S QIRK AA+LH Sbjct: 13 YLDNLISQRQLSPLTITSYRRDLLELLALATASD-----GNAALSAISHFQIRKFAAQLH 67 Query: 75 ARGLNARSISRKLSAWRGLFAWLAVEQAMPANPVDGVKPPKKSKPLPKALPADEAIRLVS 134 A+GLNARSI+RKLSAWRG F WL+ + A+ +NPVDG+K PK++KPLPKAL AD+A+RLVS Sbjct: 68 AKGLNARSIARKLSAWRGFFTWLSEQNAVASNPVDGIKAPKRNKPLPKALAADDAVRLVS 127 Query: 135 QADPARDPDSTLAACNRAMFELLYSSGLRVSELAGIDVKDVREGTYESAGWIDLEEAEVT 194 P ++ D+T+ CNRAMFELLYSSGLR SEL G+D+K +E Y SAGWID + E Sbjct: 128 SNSPGKNADATMQLCNRAMFELLYSSGLRASELVGLDLKYAQENRYTSAGWIDFDAHEAM 187 Query: 195 VTGKGGKRRKVPVGQAALQAIRDWLPLRASLVKADGGMDGHALFLNERGARMSPRVTQLR 254 VTGKG K R P+GQ A+ A++ WL +R +L+K +D H LFL+ERG R+S RV QLR Sbjct: 188 VTGKGSKMRSAPIGQPAIDALKAWLAVRDTLLK----LDPHPLFLSERGTRISARVLQLR 243 Query: 255 LKAHGKSVEMPADVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYTALDFQRL 314 LKAH ++V +P DVHPH+LRHSFASHVLQSSGDLRAVQEMLGHASI+ATQ+YT+LDFQRL Sbjct: 244 LKAHAQAVGLPMDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASISATQIYTSLDFQRL 303 Query: 315 AQVYDQAHPRAKK 327 AQVYD AHPRAKK Sbjct: 304 AQVYDAAHPRAKK 316 >ref|YP_001101190.1| tyrosine recombinase xerC [Herminiimonas arsenicoxydans] Length = 296 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 192/303 (63%), Positives = 235/303 (77%), Gaps = 9/303 (2%) Query: 25 LSPHTLDSYARDLQELRALLAPADDHDGVADSTLPHVSQAQIRKCAARLHARGLNARSIS 84 +SP T+ SY RDL EL AL +D ++ L +S QIRK AA+LHA+GLNARSI+ Sbjct: 1 MSPLTITSYRRDLLELLALATASD-----GNAALSAISHFQIRKFAAQLHAKGLNARSIA 55 Query: 85 RKLSAWRGLFAWLAVEQAMPANPVDGVKPPKKSKPLPKALPADEAIRLVSQADPARDPDS 144 RKLSAWRG F WL+ + A+ +NPVDG+K PK++KPLPKAL AD+A+RLVS P ++ D+ Sbjct: 56 RKLSAWRGFFTWLSEQNAVASNPVDGIKAPKRNKPLPKALAADDAVRLVSSNSPGKNADA 115 Query: 145 TLAACNRAMFELLYSSGLRVSELAGIDVKDVREGTYESAGWIDLEEAEVTVTGKGGKRRK 204 T+ CNRAMFELLYSSGLR SEL G+D+K +E Y SAGWID + E VTGKG K R Sbjct: 116 TMQLCNRAMFELLYSSGLRASELVGLDLKYAQENRYTSAGWIDFDAHEAMVTGKGSKMRS 175 Query: 205 VPVGQAALQAIRDWLPLRASLVKADGGMDGHALFLNERGARMSPRVTQLRLKAHGKSVEM 264 P+GQ A+ A++ WL +R +L+K +D H LFL+ERG R+S RV QLRLKAH ++V + Sbjct: 176 APIGQPAIDALKAWLAVRDTLLK----LDPHPLFLSERGTRISARVLQLRLKAHAQAVGL 231 Query: 265 PADVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYTALDFQRLAQVYDQAHPR 324 P DVHPH+LRHSFASHVLQSSGDLRAVQEMLGHASI+ATQ+YT+LDFQRLAQVYD AHPR Sbjct: 232 PMDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASISATQIYTSLDFQRLAQVYDAAHPR 291 Query: 325 AKK 327 AKK Sbjct: 292 AKK 294