BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5415.p (374 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777672.1| outer membrane porin [Herbaspirillum seroped... 428 e-118 ref|YP_003773619.1| outer membrane protein (porin) signal peptid... 426 e-117 ref|YP_004754681.1| outer membrane protein [Collimonas fungivora... 380 e-103 ref|YP_004751955.1| outer membrane protein [Collimonas fungivora... 285 7e-75 ref|YP_004754680.1| outer membrane protein [Collimonas fungivora... 265 7e-69 >ref|YP_003777672.1| outer membrane porin [Herbaspirillum seropedicae SmR1] emb|CAP19662.1| porin [Herbaspirillum seropedicae] gb|ADJ65764.1| outer membrane (porin) protein [Herbaspirillum seropedicae SmR1] Length = 387 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 290/387 (74%), Positives = 323/387 (83%), Gaps = 13/387 (3%) Query: 1 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGLVYTSKAVNATT---GSTGSKFGLNSG 57 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTG+ Y+SK +TGSKFG+NSG Sbjct: 1 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGIAYSSKVGYTDANGNAATGSKFGINSG 60 Query: 58 IIQGSRIGFKGVEDLGGGLSAVFNLETGFKNDTGAL--DDSKTSNTLFRRKSVVGLAGGF 115 +IQGSRIGFKGVEDLGGGLSAVFNLETGF +D G L D+ TS+ LFRRKSVVGL+GGF Sbjct: 61 VIQGSRIGFKGVEDLGGGLSAVFNLETGFTSDDGGLQGSDAVTSSNLFRRKSVVGLSGGF 120 Query: 116 GSVLLGRQTDWADTISAYTAVADFGGVIANSGSALNRLQGTRVNNSINYTTANLSGFTGN 175 G+VLLGRQTD+ADTISAYTAVADFGGV+ANSGS+LNRLQGTR NNS++YTTANLSGFTGN Sbjct: 121 GTVLLGRQTDFADTISAYTAVADFGGVVANSGSSLNRLQGTRTNNSVSYTTANLSGFTGN 180 Query: 176 LMYGFGETAGKTSAGQSFGLGAKYDNGPLGLGINYYQSKQGSTPSDTSLISTANGAQ--- 232 L+YGFGE AGKTSAGQ++G+G KYDNGPLGLGINYYQSK GSTPSDTSLI A Sbjct: 181 LIYGFGEQAGKTSAGQAYGIGGKYDNGPLGLGINYYQSKAGSTPSDTSLIPAAGATNANT 240 Query: 233 ----AGNTAFKGLNVVASYQFGPARVYGNWSRVKQDLNTSTTLAR-SLGNTTKADVYELG 287 AGNTA K LNVVASYQFGPARVY N+SRVKQDL + T+A +L N KAD YE+G Sbjct: 241 ALGVAGNTALKSLNVVASYQFGPARVYANYSRVKQDLKGTPTVATATLANAQKADTYEIG 300 Query: 288 TAYSLSPSLKLLASVQHTRADFANGGNKGKLTQFNLGTDYWLSKRTDLYAFVSNIRATDM 347 TAYSLSPSLKLLA+V H+RA F KGKLTQ +LG DY+LSKRTDLYAFVSN+RA+D+ Sbjct: 301 TAYSLSPSLKLLAAVDHSRATFNGVNTKGKLTQISLGADYFLSKRTDLYAFVSNMRASDI 360 Query: 348 INTGVYGDTTGSDASQTAVAVGVRHKF 374 N GV G TGSDASQTA+ G+RHKF Sbjct: 361 QNPGVTGGATGSDASQTAIITGIRHKF 387 >ref|YP_003773619.1| outer membrane protein (porin) signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ61711.1| outer membrane protein (porin) signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 390 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 288/392 (73%), Positives = 320/392 (81%), Gaps = 20/392 (5%) Query: 1 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGLVYTSKAVNATTGSTGSKFGLNSGIIQ 60 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTG+VY SK V TG TGSKF LNSG+IQ Sbjct: 1 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGVVYQSK-VATPTGGTGSKFSLNSGVIQ 59 Query: 61 GSRIGFKGVEDLGGGLSAVFNLETGFKNDTGALDDSKTSNTLFRRKSVVGLAGGFGSVLL 120 GSRIGFKG EDLGGGLSAVFNLE GF NDTGALDDSKTSNTLFRRKSVVGLAG FGSVLL Sbjct: 60 GSRIGFKGTEDLGGGLSAVFNLEAGFSNDTGALDDSKTSNTLFRRKSVVGLAGNFGSVLL 119 Query: 121 GRQTDWADTISAYTAVADFGGVIANSGSALNRLQGTRVNNSINYTTANLSGFTGNLMYGF 180 GRQTD+ADTIS+YT+V DFGG +G L+RL+GTR NNSI+YTTANL+GFTGNLMYGF Sbjct: 120 GRQTDFADTISSYTSVQDFGGWTGAAGHNLDRLEGTRTNNSISYTTANLNGFTGNLMYGF 179 Query: 181 GETAGKTSAGQSFGLGAKYDNGPLGLGINYYQSKQGSTPSDTSLIST------ANGAQAG 234 GETAG+TSAGQ+FG+G KYDNGPLGLGINYYQSK GSTP+D SL++ NG G Sbjct: 180 GETAGQTSAGQAFGVGGKYDNGPLGLGINYYQSKAGSTPADASLLAATGTNQFTNGTNNG 239 Query: 235 NTAFKGLNVVASYQFGPARVYGNWSRVKQDLNTSTTLA------------RSLGNTTKAD 282 +TA K LNV ASYQFGPARVYGNWSRVKQDLNT L R+L + KAD Sbjct: 240 STAQKVLNVAASYQFGPARVYGNWSRVKQDLNTQANLTAAGVGSLATISNRTLAASNKAD 299 Query: 283 VYELGTAYSLSPSLKLLASVQHTRADFANGGNKGKLTQFNLGTDYWLSKRTDLYAFVSNI 342 +YE+GTAYSLSPSLKLLA+V HTRA F K KLTQ +LGTDYWLSKRTDLYAF++ Sbjct: 300 IYEIGTAYSLSPSLKLLAAVDHTRAQFDGVSGKAKLTQVSLGTDYWLSKRTDLYAFLAYS 359 Query: 343 RATDMINTGVYGDTTGSDASQTAVAVGVRHKF 374 +ATD+ N GV D++G+D +Q AVAVG+RHKF Sbjct: 360 KATDLNNPGV-ADSSGTDGNQGAVAVGIRHKF 390 >ref|YP_004754681.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AAT42406.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AEK63858.1| Outer membrane protein [Collimonas fungivorans Ter331] Length = 390 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 258/391 (65%), Positives = 303/391 (77%), Gaps = 18/391 (4%) Query: 1 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGLVYTSKAVNATTGSTGSKFGLNSGIIQ 60 MKKSL+ALAVLGA AGAAQAQSSVTIYGIVDTG+VYTSKA+ +TG TGSKF +NSGIIQ Sbjct: 1 MKKSLIALAVLGAIAGAAQAQSSVTIYGIVDTGIVYTSKALT-STGGTGSKFSINSGIIQ 59 Query: 61 GSRIGFKGVEDLGGGLSAVFNLETGFKNDTGALDDSKTSNTLFRRKSVVGLAGGFGSVLL 120 GSR+GFKGVEDLGGGL A+F LE GF NDTG L K + TLFRRKSVVGL G FGSVLL Sbjct: 60 GSRLGFKGVEDLGGGLKALFQLEAGFNNDTGGLQGDKGTTTLFRRKSVVGLGGNFGSVLL 119 Query: 121 GRQTDWADTISAYTAVADFGGVIANSGSALNRLQGTRVNNSINYTTANLSGFTGNLMYGF 180 GRQTD D +S +T+V DFGGV + G L+RL+GTR NNSI Y T ++SGFTG+L+YGF Sbjct: 120 GRQTDILDDVSQWTSVQDFGGVTGSVGHNLDRLEGTRTNNSIRYNTPDVSGFTGSLIYGF 179 Query: 181 GETAGKTSAGQSFGLGAKYDNGPLGLGINYYQSKQGS-TPSDTSLISTANGA----QAGN 235 GETAG+TSAGQSFG GA+Y NGPLGL YYQSK GS T SDTSLI+ + A ++G+ Sbjct: 180 GETAGQTSAGQSFGAGAQYANGPLGLFAAYYQSKLGSPTASDTSLINGSQVANFSGKSGD 239 Query: 236 TAFKGLNVVASYQFGPARVYGNWSRVKQDLNTSTTLARS-----------LGNTTKADVY 284 TA K ++ ASYQ GPAR+YGNWSR KQ L TS+ A + N TKAD++ Sbjct: 240 TALKTFSIGASYQAGPARLYGNWSRTKQPLATSSNSATTGILQPGSFTVGSFNNTKADIF 299 Query: 285 ELGTAYSLSPSLKLLASVQHTRADFAN-GGNKGKLTQFNLGTDYWLSKRTDLYAFVSNIR 343 ELG Y+++ L LLASVQ+ + FA+ G +KGKLTQFNLGTDY+LSKRTDLYAFVSN+R Sbjct: 300 ELGVNYAVTAPLHLLASVQYNKLTFADAGADKGKLTQFNLGTDYFLSKRTDLYAFVSNLR 359 Query: 344 ATDMINTGVYGDTTGSDASQTAVAVGVRHKF 374 A D +N GVYGD+ G +QTAVAVG+RHKF Sbjct: 360 AKDAVNPGVYGDSLGDTGNQTAVAVGIRHKF 390 >ref|YP_004751955.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AEK61132.1| Outer membrane protein [Collimonas fungivorans Ter331] Length = 370 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 197/386 (51%), Positives = 250/386 (64%), Gaps = 28/386 (7%) Query: 1 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGLVYTSKAVNATTGSTGSKFGLNSGIIQ 60 MKK++ ALA LG AQAQ++VTIYG++D GL YTSK S+ L+SG + Sbjct: 1 MKKTVFALAALGLIGANAQAQTNVTIYGVIDAGLTYTSK----VGPKNDSRISLDSGDMA 56 Query: 61 GSRIGFKGVEDLGGGLSAVFNLETGFKNDTGALDDSKTSNTLFRRKSVVGLAGGFGSVLL 120 SRIGF+G EDLGGGL A+F LE GF D G+L T++TLF RK+VVGL+G FG+V L Sbjct: 57 TSRIGFRGTEDLGGGLKAIFQLENGFNADDGSL---ATASTLFDRKAVVGLSGSFGTVTL 113 Query: 121 GRQTDWADTI-SAYTAVADFG--GVIANSGSALNRLQGTRVNNSINYTTANLSGFTGNLM 177 GRQTD+ D I S YT+V FG G+ A + L+R+ G R NNSI Y +ANLSGFTG+L Sbjct: 114 GRQTDYLDDIGSKYTSVQTFGSNGIKAGHFNNLDRVGGVRANNSIRYDSANLSGFTGSLF 173 Query: 178 YGFGETAGKTSAGQSFGLGAKYDNGPLGLGINYYQSKQGSTPSDTSLISTANGAQAGNTA 237 YGFGE AG+TSAGQSFGL Y NGP G+G+ Y+Q+K L + A ++AG+T Sbjct: 174 YGFGEVAGQTSAGQSFGLAGNYANGPFGIGLGYFQTK---------LAADALPSKAGDTD 224 Query: 238 FKGLNVVASYQFGPARVYGNWSRVKQ--DLNTSTTLARSLGNTTKADVYELGTAYSLSPS 295 K + ASYQ GPA++YG WS+ K+ + T ++ TKA++++LG YSLS + Sbjct: 225 LKTFTLGASYQAGPAKIYGAWSQTKRPLAAALAATGLVNITTATKANIFDLGVDYSLSGN 284 Query: 296 LKLLASVQHTRADFAN---GGNKGKLTQFNLGTDYWLSKRTDLYAFVSNIRATDMINTGV 352 L LLASV + RAD + G KGK TQ NLG DY+LSKRTDLYA +N RA D+ N GV Sbjct: 285 LHLLASVIYDRADLSRKTAGSTKGKTTQLNLGVDYYLSKRTDLYALYTNQRANDVNNPGV 344 Query: 353 ----YGDTTGSDASQTAVAVGVRHKF 374 Y D SQ VG+RHKF Sbjct: 345 INAAYSSAPADDTSQNVFRVGLRHKF 370 >ref|YP_004754680.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AAT42405.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AEK63857.1| Outer membrane protein [Collimonas fungivorans Ter331] Length = 371 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 193/387 (49%), Positives = 241/387 (62%), Gaps = 29/387 (7%) Query: 1 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGLVYTSKAVNATTGSTG----SKFGLNS 56 MKKSL+AL VLGA AGAAQAQSSVTIYG VD G+ Y++ V A + G SKFG+ S Sbjct: 1 MKKSLIALTVLGAIAGAAQAQSSVTIYGTVDAGVTYSNNNVPANNANDGRLGGSKFGVGS 60 Query: 57 GIIQGSRIGFKGVEDLGGGLSAVFNLETGFKNDTGALDDSKTSNTLFRRKSVVGLAGGFG 116 G I SRIGFKGVEDLGGGL A+F LE GF DTG + K+ LF RKSVVGL G FG Sbjct: 61 GNIDTSRIGFKGVEDLGGGLKALFQLEAGFNTDTGGFEQDKS---LFNRKSVVGLGGNFG 117 Query: 117 SVLLGRQTDWADTIS-AYTAVADFGGVIANSGSALNRLQGTRVNNSINYTTANLSGFTGN 175 SVLLGRQ+D D YT+V DFG + S +RL+G+R NSI Y + + SG T + Sbjct: 118 SVLLGRQSDVLDDYGHQYTSVKDFGNFVG-SPHVGDRLEGSRTQNSIRYNSPSFSGVTAS 176 Query: 176 LMYGFGETAGKTSAGQSFGLGAKYDNGPLGLGINYYQSKQGSTPSDTSLISTANGAQAGN 235 +YGFGE AG S GQ+FG G YDNGPLG + YYQSK G +DT+ + N G+ Sbjct: 177 AIYGFGEEAGANSNGQAFGGGVAYDNGPLGAYLGYYQSKAGKNSADTAPLFQLNPVAEGD 236 Query: 236 TAFKGLNVVASYQFGPARVYGNWSRVKQDLNTSTTLARSLGNTTKADVYELGTAYSLSPS 295 T K ++ ASYQ GPAR+YGNWSR+ ++ K +++ELGT Y+L+ Sbjct: 237 TMNKTFSLGASYQAGPARLYGNWSRI------------NVPEQYKQNIFELGTDYALTAP 284 Query: 296 LKLLASVQHTR----ADFANGGNKGKLTQFNLGTDYWLSKRTDLYAFVSNIRATDMINTG 351 L LLASVQHT+ + +K ++TQ NLG DY+LSKRTDLY S + + G Sbjct: 285 LHLLASVQHTQYSLDGNTEGNSSKPQVTQVNLGVDYYLSKRTDLYTLASYAKGKNGAPVG 344 Query: 352 VYG----DTTGSDASQTAVAVGVRHKF 374 Y ++Q AVA+G+RHKF Sbjct: 345 DYSAPAVQNDAGKSNQAAVAIGIRHKF 371