BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5413.p (285 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777670.1| diaminopimelate epimerase [Herbaspirillum se... 519 e-145 ref|YP_004754678.1| diaminopimelate epimerase [Collimonas fungiv... 464 e-129 gb|AAT42404.1| diaminopimelate epimerase [Collimonas fungivorans... 450 e-125 sp|A4G980|DAPF_HERAR RecName: Full=Diaminopimelate epimerase; Sh... 448 e-124 ref|YP_001354891.1| diaminopimelate epimerase [Janthinobacterium... 445 e-123 >ref|YP_003777670.1| diaminopimelate epimerase [Herbaspirillum seropedicae SmR1] gb|ADJ65762.1| diaminopimelate epimerase protein [Herbaspirillum seropedicae SmR1] Length = 287 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 257/287 (89%), Positives = 273/287 (95%), Gaps = 2/287 (0%) Query: 1 MKIKFTKMHGA--DFVVVDAIHQDIALTPAQWKFIADRRFGIGADQMLVVEKAQAPGVDF 58 MKIKFTKMHGA DFVV+DAI+Q I+L+PAQW+FIADRRFGIGADQMLVVEKA+ GVDF Sbjct: 1 MKIKFTKMHGAGNDFVVLDAINQSISLSPAQWQFIADRRFGIGADQMLVVEKARGEGVDF 60 Query: 59 RYRIYNADGGEVEQCGNGARAFVRFVTEKGLTDKRAIRVETMSGVIEPRLEADGQITVDM 118 RYRIYNADGGEVEQCGNGARAFV+FVT+KGLT KRAIRVETMSGVIEPRLE DGQITVDM Sbjct: 61 RYRIYNADGGEVEQCGNGARAFVKFVTDKGLTSKRAIRVETMSGVIEPRLEDDGQITVDM 120 Query: 119 GAPILTPAEVPFDSRNLQHRQQAEDTLWPLDVAGKTTWISVVSMGNPHAVQVVEDSEAAP 178 GAPILTPA+VPFDS LQHR +AEDTLWPLDVAGKTTWISVVSMGNPHAVQVVEDSEAAP Sbjct: 121 GAPILTPADVPFDSHGLQHRNEAEDTLWPLDVAGKTTWISVVSMGNPHAVQVVEDSEAAP 180 Query: 179 VLVDGPLIEHHERFPRRVNAGFMQVVDRHHINLRVYERGAGETLACGTGACAAVVAGIRR 238 VL +GPLIE HERFP+RVNAGFMQVVDRHH+NLRVYERGAGETLACGTGACAAVVAGIRR Sbjct: 181 VLSEGPLIERHERFPKRVNAGFMQVVDRHHVNLRVYERGAGETLACGTGACAAVVAGIRR 240 Query: 239 GLLDSPVAVQTHGGLLNIAWAGPGAPVMMTGPAVTVFEGEIELPDQL 285 GLLDSPVAVQTHGG+LNIAWAGPG VMMTGPAV+V+EGEIELPDQL Sbjct: 241 GLLDSPVAVQTHGGVLNIAWAGPGEAVMMTGPAVSVYEGEIELPDQL 287 >ref|YP_004754678.1| diaminopimelate epimerase [Collimonas fungivorans Ter331] gb|AEK63855.1| Diaminopimelate epimerase [Collimonas fungivorans Ter331] Length = 287 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 232/283 (81%), Positives = 252/283 (89%), Gaps = 2/283 (0%) Query: 1 MKIKFTKMHGA--DFVVVDAIHQDIALTPAQWKFIADRRFGIGADQMLVVEKAQAPGVDF 58 MK+KFTKMHGA DFVV+DAIHQ + TPAQW+ + DRRFG+GADQMLVVEK+QA GVDF Sbjct: 1 MKLKFTKMHGAGNDFVVIDAIHQHVDFTPAQWQRLGDRRFGVGADQMLVVEKSQAEGVDF 60 Query: 59 RYRIYNADGGEVEQCGNGARAFVRFVTEKGLTDKRAIRVETMSGVIEPRLEADGQITVDM 118 RYRIYNADGGEVEQCGNGARAFV+FVT+KGLT KRAIRVETMSG+IEP+LE DG+ITV M Sbjct: 61 RYRIYNADGGEVEQCGNGARAFVKFVTDKGLTSKRAIRVETMSGIIEPKLEDDGRITVAM 120 Query: 119 GAPILTPAEVPFDSRNLQHRQQAEDTLWPLDVAGKTTWISVVSMGNPHAVQVVEDSEAAP 178 GAP+L PA VPFD+ NL R EDTLWPLDV GK WISVVSMGNPHAVQVVEDSEAAP Sbjct: 121 GAPVLAPAAVPFDASNLDSRAMGEDTLWPLDVQGKQVWISVVSMGNPHAVQVVEDSEAAP 180 Query: 179 VLVDGPLIEHHERFPRRVNAGFMQVVDRHHINLRVYERGAGETLACGTGACAAVVAGIRR 238 VL +GPLIEHH RFPRRVNAGFMQ+VDRH I LRV+ERGAGETLACGTGACAAVVAGIRR Sbjct: 181 VLAEGPLIEHHPRFPRRVNAGFMQIVDRHSIKLRVFERGAGETLACGTGACAAVVAGIRR 240 Query: 239 GLLDSPVAVQTHGGLLNIAWAGPGAPVMMTGPAVTVFEGEIEL 281 GLLDSPVAVQTHGG L+IAWAG VMMTGPAV+VFEGEIE+ Sbjct: 241 GLLDSPVAVQTHGGELSIAWAGGQQAVMMTGPAVSVFEGEIEI 283 >gb|AAT42404.1| diaminopimelate epimerase [Collimonas fungivorans Ter331] Length = 280 Score = 450 bits (1158), Expect = e-125, Method: Composition-based stats. Identities = 226/276 (81%), Positives = 245/276 (88%), Gaps = 2/276 (0%) Query: 8 MHGA--DFVVVDAIHQDIALTPAQWKFIADRRFGIGADQMLVVEKAQAPGVDFRYRIYNA 65 MHGA DFVV+DAIHQ + TPAQW+ + DRRFG+GADQMLVVEK+QA GVDFRYRIYNA Sbjct: 1 MHGAGNDFVVIDAIHQHVDFTPAQWQRLGDRRFGVGADQMLVVEKSQAEGVDFRYRIYNA 60 Query: 66 DGGEVEQCGNGARAFVRFVTEKGLTDKRAIRVETMSGVIEPRLEADGQITVDMGAPILTP 125 DGGEVEQCGNGARAFV+FVT+KGLT KRAIRVETMSG+IEP+LE DG+ITV MGAP+L P Sbjct: 61 DGGEVEQCGNGARAFVKFVTDKGLTSKRAIRVETMSGIIEPKLEDDGRITVAMGAPVLAP 120 Query: 126 AEVPFDSRNLQHRQQAEDTLWPLDVAGKTTWISVVSMGNPHAVQVVEDSEAAPVLVDGPL 185 A VPFD+ NL R EDTLWPLDV GK WISVVSMGNPHAVQVVEDSEAAPVL +GPL Sbjct: 121 AAVPFDASNLDSRAMGEDTLWPLDVQGKQVWISVVSMGNPHAVQVVEDSEAAPVLAEGPL 180 Query: 186 IEHHERFPRRVNAGFMQVVDRHHINLRVYERGAGETLACGTGACAAVVAGIRRGLLDSPV 245 IEHH RFPRRVNAGFMQ+VDRH I LRV+ERGAGETLACGTGACAAVVAGIRRGLLDSPV Sbjct: 181 IEHHPRFPRRVNAGFMQIVDRHSIKLRVFERGAGETLACGTGACAAVVAGIRRGLLDSPV 240 Query: 246 AVQTHGGLLNIAWAGPGAPVMMTGPAVTVFEGEIEL 281 AVQTHGG L+IAWAG VMMTGPAV+VFEGEIE+ Sbjct: 241 AVQTHGGELSIAWAGGQQAVMMTGPAVSVFEGEIEI 276 >sp|A4G980|DAPF_HERAR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase emb|CAL63067.2| Diaminopimelate epimerase (DAP epimerase) [Herminiimonas arsenicoxydans] Length = 283 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 221/283 (78%), Positives = 248/283 (87%), Gaps = 2/283 (0%) Query: 1 MKIKFTKMHGA--DFVVVDAIHQDIALTPAQWKFIADRRFGIGADQMLVVEKAQAPGVDF 58 MKIKFTKMHGA DFVV+DAI+Q I TPAQW+ +ADRRFG+GADQMLVVEK QA GVDF Sbjct: 1 MKIKFTKMHGAGNDFVVIDAINQSIHFTPAQWQHLADRRFGVGADQMLVVEKPQAAGVDF 60 Query: 59 RYRIYNADGGEVEQCGNGARAFVRFVTEKGLTDKRAIRVETMSGVIEPRLEADGQITVDM 118 RYRIYNADGGEVEQCGNGARAFV+FVT+K LTDK+AIRVETMSGVIEPRLEA+GQITVDM Sbjct: 61 RYRIYNADGGEVEQCGNGARAFVKFVTDKKLTDKQAIRVETMSGVIEPRLEANGQITVDM 120 Query: 119 GAPILTPAEVPFDSRNLQHRQQAEDTLWPLDVAGKTTWISVVSMGNPHAVQVVEDSEAAP 178 GAPILTP +VPFD L + + DTLWPLD+ G+T WISV+SMGNPHAVQVV D++ AP Sbjct: 121 GAPILTPEDVPFDVSGLLCKAEGADTLWPLDIKGETHWISVLSMGNPHAVQVVADADHAP 180 Query: 179 VLVDGPLIEHHERFPRRVNAGFMQVVDRHHINLRVYERGAGETLACGTGACAAVVAGIRR 238 V DG LIEHH RFP+RVNAGFMQ++D H I LRV+ERGAGETLACGTGACAAVV+GIRR Sbjct: 181 VREDGVLIEHHPRFPKRVNAGFMQIIDPHQIKLRVFERGAGETLACGTGACAAVVSGIRR 240 Query: 239 GLLDSPVAVQTHGGLLNIAWAGPGAPVMMTGPAVTVFEGEIEL 281 GLL SP+ VQT GG L+IAWAG +PV++TGPAVTVFEGEIEL Sbjct: 241 GLLASPIKVQTRGGELSIAWAGDNSPVLLTGPAVTVFEGEIEL 283 >ref|YP_001354891.1| diaminopimelate epimerase [Janthinobacterium sp. Marseille] gb|ABR89089.1| diaminopimelate epimerase [Janthinobacterium sp. Marseille] Length = 276 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 220/276 (79%), Positives = 244/276 (88%), Gaps = 2/276 (0%) Query: 8 MHGA--DFVVVDAIHQDIALTPAQWKFIADRRFGIGADQMLVVEKAQAPGVDFRYRIYNA 65 MHGA DFVV+DAI+Q I TPAQW+++ADRRFG+GADQMLVVEK QA GVDFRYRIYNA Sbjct: 1 MHGAGNDFVVIDAINQAINFTPAQWQYLADRRFGVGADQMLVVEKPQAAGVDFRYRIYNA 60 Query: 66 DGGEVEQCGNGARAFVRFVTEKGLTDKRAIRVETMSGVIEPRLEADGQITVDMGAPILTP 125 DGGEVEQCGNGARAFVRFVT+K LTDKRAI+VETMSG+IEPRLEA+GQITVDMGAPIL P Sbjct: 61 DGGEVEQCGNGARAFVRFVTDKKLTDKRAIKVETMSGIIEPRLEANGQITVDMGAPILNP 120 Query: 126 AEVPFDSRNLQHRQQAEDTLWPLDVAGKTTWISVVSMGNPHAVQVVEDSEAAPVLVDGPL 185 +VPFD+R+L + + EDTLWPLD+ G+T WISVVSMGNPHAVQVV D E APV DG L Sbjct: 121 EDVPFDTRDLLCKAEGEDTLWPLDIKGETNWISVVSMGNPHAVQVVADVEEAPVREDGVL 180 Query: 186 IEHHERFPRRVNAGFMQVVDRHHINLRVYERGAGETLACGTGACAAVVAGIRRGLLDSPV 245 IEHH RFP+RVNAGFMQ++D+HHI LRV+ERGAGETLACGTGACAAVVAGIRRGLL SPV Sbjct: 181 IEHHPRFPKRVNAGFMQILDQHHIKLRVFERGAGETLACGTGACAAVVAGIRRGLLVSPV 240 Query: 246 AVQTHGGLLNIAWAGPGAPVMMTGPAVTVFEGEIEL 281 VQT GG L IAW G +PVMMTGPAVTVFEGEIE+ Sbjct: 241 KVQTRGGELVIAWGGRDSPVMMTGPAVTVFEGEIEI 276