BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5407.p         (117 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777665.1| transmembrane protein [Herbaspirillum serope...   134   6e-30
ref|YP_004754672.1| hypothetical protein CFU_4027 [Collimonas fu...   109   1e-22
ref|ZP_04579726.1| conserved hypothetical protein [Oxalobacter f...   105   3e-21
ref|YP_001354885.1| hypothetical protein mma_3195 [Janthinobacte...   104   6e-21
ref|ZP_08273865.1| hypothetical protein IMCC9480_2147 [Oxalobact...   102   3e-20

>ref|YP_003777665.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65757.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 117

 Score =  134 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 114/117 (97%), Positives = 116/117 (99%)

Query: 1   MRLLLTWLINALALLAVPYLMHSVQVDSFGSALLAALILGFVNTIVRPVLVVLTLPVTML 60
           MRLLLTWLINALALLAVPYLMHSVQVDSFGSALLAALILGFVNTIVRPVLVVLTLPVT++
Sbjct: 1   MRLLLTWLINALALLAVPYLMHSVQVDSFGSALLAALILGFVNTIVRPVLVVLTLPVTVV 60

Query: 61  TLGLFILVINGLMFWVVAQLVGGFHVAGFWSAVGGALLYSIVSWALSTLLLKSGSNQ 117
           TLGLFILVINGLMFWVVAQLVGGFHVAGFWSAVGGALLYSIVSWALSTLLLKSG NQ
Sbjct: 61  TLGLFILVINGLMFWVVAQLVGGFHVAGFWSAVGGALLYSIVSWALSTLLLKSGPNQ 117


>ref|YP_004754672.1| hypothetical protein CFU_4027 [Collimonas fungivorans Ter331]
 gb|AEK63849.1| conserved hypothetical protein [Collimonas fungivorans Ter331]
          Length = 122

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 89/112 (79%), Positives = 104/112 (92%)

Query: 1   MRLLLTWLINALALLAVPYLMHSVQVDSFGSALLAALILGFVNTIVRPVLVVLTLPVTML 60
           MRLL+TWLIN LALLAVPYLMHSVQ  SFG+AL+AAL+LGFVNT++RP+L++LTLP T+L
Sbjct: 9   MRLLITWLINTLALLAVPYLMHSVQFASFGAALIAALVLGFVNTLIRPILLLLTLPATLL 68

Query: 61  TLGLFILVINGLMFWVVAQLVGGFHVAGFWSAVGGALLYSIVSWALSTLLLK 112
           TLGLFI +INGLMFW+V+ LV GF+VA FWSAVGGA+LYSIVSWALSTLLLK
Sbjct: 69  TLGLFIFIINGLMFWLVSHLVSGFYVASFWSAVGGAILYSIVSWALSTLLLK 120


>ref|ZP_04579726.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gb|EEO30699.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 113

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 76/113 (67%), Positives = 102/113 (90%)

Query: 1   MRLLLTWLINALALLAVPYLMHSVQVDSFGSALLAALILGFVNTIVRPVLVVLTLPVTML 60
           MR+L+ WLIN +ALL +PYLM S+++  F +AL+AAL+LG VN ++RP+LVVLTLPVT++
Sbjct: 1   MRILIVWLINTVALLVLPYLMTSIRISGFWTALIAALVLGLVNALIRPILVVLTLPVTLV 60

Query: 61  TLGLFILVINGLMFWVVAQLVGGFHVAGFWSAVGGALLYSIVSWALSTLLLKS 113
           TLGLFI VINGL+FW+V+++V GF+V+GFW+A+GGALLYSI+SWALSTLLLK+
Sbjct: 61  TLGLFIFVINGLLFWLVSRMVDGFYVSGFWAAIGGALLYSIISWALSTLLLKN 113


>ref|YP_001354885.1| hypothetical protein mma_3195 [Janthinobacterium sp. Marseille]
 gb|ABR90472.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 114

 Score =  104 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 84/112 (75%), Positives = 101/112 (90%)

Query: 1   MRLLLTWLINALALLAVPYLMHSVQVDSFGSALLAALILGFVNTIVRPVLVVLTLPVTML 60
           MR++L W INA AL A+P+LM S++VDS G+A++AALILG VNT++RPVLV+LTLPVT+L
Sbjct: 1   MRIILIWAINAAALFALPFLMSSIKVDSVGTAIIAALILGLVNTLIRPVLVLLTLPVTLL 60

Query: 61  TLGLFILVINGLMFWVVAQLVGGFHVAGFWSAVGGALLYSIVSWALSTLLLK 112
           TLGLFI VINGLMFW V+QLVGGFHVAGFWSAVGGA+LYSI+SW LS LLL+
Sbjct: 61  TLGLFIFVINGLMFWAVSQLVGGFHVAGFWSAVGGAILYSIISWILSALLLQ 112


>ref|ZP_08273865.1| hypothetical protein IMCC9480_2147 [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF32669.1| hypothetical protein IMCC9480_2147 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 121

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 80/117 (68%), Positives = 100/117 (85%)

Query: 1   MRLLLTWLINALALLAVPYLMHSVQVDSFGSALLAALILGFVNTIVRPVLVVLTLPVTML 60
           MRLL+TW INA AL A+PYLMHSV VDS G+AL+AAL+LG VNT++RP+L++LTLPVT L
Sbjct: 1   MRLLITWFINAAALFALPYLMHSVSVDSIGTALIAALVLGLVNTLIRPLLLLLTLPVTFL 60

Query: 61  TLGLFILVINGLMFWVVAQLVGGFHVAGFWSAVGGALLYSIVSWALSTLLLKSGSNQ 117
           TLGLFI VINGLMFW VAQ++GGFHVAGF SA+  A++YSI+SWALS+L+    + +
Sbjct: 61  TLGLFIFVINGLMFWGVAQIIGGFHVAGFGSAILAAVVYSIISWALSSLIFDKNATK 117