BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5403.p (322 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777661.1| NADH-ubiquinone oxidoreductase [Herbaspirill... 580 e-164 ref|ZP_08273859.1| NAD-dependent epimerase/dehydratase [Oxalobac... 347 1e-93 ref|YP_003644192.1| NAD-dependent epimerase/dehydratase [Thiomon... 304 1e-80 emb|CAZ89527.1| putative NADH UBIQUINONE OXIDOREDUCTASE 1 ALPHA ... 303 4e-80 ref|YP_560784.1| hypothetical protein Bxe_A0199 [Burkholderia xe... 290 2e-76 >ref|YP_003777661.1| NADH-ubiquinone oxidoreductase [Herbaspirillum seropedicae SmR1] gb|ADJ65753.1| NADH-ubiquinone oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 322 Score = 580 bits (1496), Expect = e-164, Method: Composition-based stats. Identities = 291/322 (90%), Positives = 312/322 (96%) Query: 1 MAVKKILVIGGSGFIGTRLIELLGSTTGYRIMVPTRRYERAKHLLVSPVVSVVQANIHDD 60 MA KKILVIGGSGFIGTRL+ELLGS+T YR+MVPTRRYERAKHLLVSPVV+VVQANIHDD Sbjct: 1 MAFKKILVIGGSGFIGTRLVELLGSSTDYRVMVPTRRYERAKHLLVSPVVTVVQANIHDD 60 Query: 61 AVLARLVAEADVVINLVGILQSRPARGGAPYGPDFERQHVLLPRRIVAACVQQGVPRYLH 120 A LARLVAEADVVINLVGILQSRPARGGA YGPDFERQHVLLPRRIVAACVQQGV RYLH Sbjct: 61 AALARLVAEADVVINLVGILQSRPARGGAAYGPDFERQHVLLPRRIVAACVQQGVKRYLH 120 Query: 121 MSALCADAQGPSMYLRSKAAGEQEALASPALDVAIFRPSVVFGEGDNFINMFAGLNRLFP 180 MSALCADA+GPSMYLRSKAAGEQEAL++P+LDVAIFRPSVVFGEGDNF+NMFAGLNR+FP Sbjct: 121 MSALCADAKGPSMYLRSKAAGEQEALSAPSLDVAIFRPSVVFGEGDNFLNMFAGLNRMFP 180 Query: 181 VIPLGSPDARFQPVYVGDVAQAFVNALALPRLGGKVFELGGPKQYSLRELVRLSGWYSGH 240 VIPLGSPDARFQPVYVGDVAQAFVNALALPRLGGKVFELGGPKQY+LRELVRLSGWYSGH Sbjct: 181 VIPLGSPDARFQPVYVGDVAQAFVNALALPRLGGKVFELGGPKQYTLRELVRLSGWYSGH 240 Query: 241 PRPVIGLPDAAGWLQAFALEHLPGKLMSRDNVASMKVDNVLHGPIAPELQLTPRALEDVI 300 PRP++GLPDA GWLQAFALEHLPGKLMSRDNVASM+VDNVLH P+A EL+LTP+++E+V+ Sbjct: 241 PRPIVGLPDALGWLQAFALEHLPGKLMSRDNVASMQVDNVLHAPLAAELRLTPKSVEEVV 300 Query: 301 PGYLLPRSPQQQFDFFRSTARR 322 PGYL PRSPQQQFD FRSTARR Sbjct: 301 PGYLCPRSPQQQFDLFRSTARR 322 >ref|ZP_08273859.1| NAD-dependent epimerase/dehydratase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32663.1| NAD-dependent epimerase/dehydratase [Oxalobacteraceae bacterium IMCC9480] Length = 325 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 192/324 (59%), Positives = 229/324 (70%), Gaps = 3/324 (0%) Query: 1 MAVKKILVIGGSGFIGTRLIELLGSTTGYRIMVPTRRYERAKHLLVSPVVSVVQANIHDD 60 M +LV+GG+GF+G+ L+ L G ++VPTRR RA+HL V P V +V+ +IH + Sbjct: 3 MHHSNVLVLGGTGFVGSHLVAQL-VAQGRHVIVPTRRAIRARHLAVLPTVEIVETDIHQE 61 Query: 61 AVLARLVAEADVVINLVGILQSRPARGGAP-YGPDFERQHVLLPRRIVAACVQQGVPRYL 119 LARL+ D VINLVG+L SRP GGA YGPDF R HV LP RIVAAC GV R+L Sbjct: 62 QALARLMGRTDAVINLVGVLHSRPVNGGAASYGPDFARAHVELPIRIVAACGVAGVKRFL 121 Query: 120 HMSALCADAQGPSMYLRSKAAGEQEALASPALDVAIFRPSVVFGEGDNFINMFAGLNRLF 179 HMSAL AD PSMYLRSKAAGE A + PA+ +FRPSVVFGE D F+NMFAG+ R F Sbjct: 122 HMSALGADRNAPSMYLRSKAAGEDAARSHPAVATTVFRPSVVFGEDDAFLNMFAGMQRWF 181 Query: 180 PVIPLGSPDARFQPVYVGDVAQAFVNALALPRLGGKVFELGGPKQYSLRELVRLSGWYSG 239 PVIPLG DARFQP+YV DVAQAFVNAL GKV+ELGGP+ ++LRELV+L+G SG Sbjct: 182 PVIPLGGADARFQPIYVEDVAQAFVNALDNQHTVGKVYELGGPEVFTLRELVQLAGRASG 241 Query: 240 HPRPVIGLPDAAGWLQAFALEHLP-GKLMSRDNVASMKVDNVLHGPIAPELQLTPRALED 298 HPRPVIGLP A LQA LE P G +MSRDN+ SMK DNV+ GPIAPEL +TP+ALE Sbjct: 242 HPRPVIGLPPALARLQALVLEFAPGGPVMSRDNLDSMKTDNVMRGPIAPELGVTPQALEA 301 Query: 299 VIPGYLLPRSPQQQFDFFRSTARR 322 + YL + FD +R A+R Sbjct: 302 IAARYLGEAGARSHFDQYRVRAKR 325 >ref|YP_003644192.1| NAD-dependent epimerase/dehydratase [Thiomonas intermedia K12] gb|ADG31862.1| NAD-dependent epimerase/dehydratase [Thiomonas intermedia K12] Length = 330 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 180/334 (53%), Positives = 224/334 (67%), Gaps = 16/334 (4%) Query: 1 MAVKKILVIGGSGFIGTRLIELLGSTTGYRIMVPTRRYERAKHLLVSPVVSVVQANIHDD 60 M + ILVIGGSGFIG+RL+ L S + + VPTRR +RA+HL+ P+V VV+ ++HDD Sbjct: 1 MQQQNILVIGGSGFIGSRLVNAL-SLANHFVTVPTRRRQRARHLVQLPLVDVVETDVHDD 59 Query: 61 AVLARLVAEADVVINLVGILQSRPARGGAPYGPDFERQHVLLPRRIVAACVQQGVPRYLH 120 A LA+LVA D V+NLVGILQ R G PYG DF R HV LPRRI AAC QQGV R +H Sbjct: 60 AKLAKLVAGRDAVVNLVGILQ---GRRGQPYGADFARAHVDLPRRIAAACAQQGVRRVVH 116 Query: 121 MSALCADAQGPSMYLRSKAAGEQEALASPALDVAIFRPSVVFGEGDNFINMFAGLNRLFP 180 MSAL AD+ GPSMYLRSK GE A +D+ IFRPSVVFG DNF+N FA L R+FP Sbjct: 117 MSALGADSNGPSMYLRSKGDGEAALKAQAGIDLTIFRPSVVFGPEDNFLNTFAKLQRVFP 176 Query: 181 VIPLGSPDARFQPVYVGDVAQAFVNALALPRLG---GKVFELGGPKQYSLRELVRLSGWY 237 V+PL RF PVYVGDV AF ++L P+ G+ +EL GP Y+L ELVRLSG + Sbjct: 177 VVPLAGAKTRFAPVYVGDVVTAFASSLVGPQARETLGQTYELCGPGTYTLAELVRLSGQW 236 Query: 238 S----GHPRPVIGLPDAAGWLQAFALEHLPGK-LMSRDNVASMKVDNVLHGPI---APEL 289 + G R +I LPDA G LQA +E PG+ +MSRDN+ SMKVD+V G + APEL Sbjct: 237 ARVGGGRGRSIIPLPDALGRLQALMMELAPGEPVMSRDNLDSMKVDSVCSGALPGFAPEL 296 Query: 290 QLT-PRALEDVIPGYLLPRSPQQQFDFFRSTARR 322 + P +LE + P YL P+ + ++ R+TA R Sbjct: 297 GVPHPESLEAIAPTYLDPKYQESEYGSMRATAGR 330 >emb|CAZ89527.1| putative NADH UBIQUINONE OXIDOREDUCTASE 1 ALPHA SUBUNIT [Thiomonas sp. 3As] Length = 330 Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 180/334 (53%), Positives = 225/334 (67%), Gaps = 16/334 (4%) Query: 1 MAVKKILVIGGSGFIGTRLIELLGSTTGYRIMVPTRRYERAKHLLVSPVVSVVQANIHDD 60 M + ILVIGGSGFIG+RL+ L S + + VPTRR +RA+HL+ P+V VV+ ++HDD Sbjct: 1 MQQQNILVIGGSGFIGSRLVNAL-SLANHFVTVPTRRRQRARHLVQLPLVDVVEIDVHDD 59 Query: 61 AVLARLVAEADVVINLVGILQSRPARGGAPYGPDFERQHVLLPRRIVAACVQQGVPRYLH 120 A LA+LVA D V+NLVGILQ R G PYG DF R HV LPRRI AAC QQGV R +H Sbjct: 60 AKLAKLVAGRDAVVNLVGILQ---GRRGQPYGADFARAHVDLPRRIAAACAQQGVRRVVH 116 Query: 121 MSALCADAQGPSMYLRSKAAGEQEALASPALDVAIFRPSVVFGEGDNFINMFAGLNRLFP 180 MSAL AD++GPSMYLRSK GE A +D+ IFRPSVVFG DNF+N FA L R+FP Sbjct: 117 MSALGADSKGPSMYLRSKGDGEAALKAQAGIDLTIFRPSVVFGPEDNFLNTFAKLQRVFP 176 Query: 181 VIPLGSPDARFQPVYVGDVAQAFVNALALPRLG---GKVFELGGPKQYSLRELVRLSGWY 237 V+PL RF PVYVGDV AF ++L P+ G+ +EL GP Y+L ELVRLSG + Sbjct: 177 VVPLAGAKTRFAPVYVGDVVTAFASSLVGPQARETLGQTYELCGPGTYTLAELVRLSGQW 236 Query: 238 S----GHPRPVIGLPDAAGWLQAFALEHLPGK-LMSRDNVASMKVDNVLHGPI---APEL 289 + G R +I LPDA G LQA +E PG+ +MSRDN+ SMKVD+V G + APEL Sbjct: 237 ARVGGGRGRSIIPLPDALGRLQALMMELAPGEPVMSRDNLDSMKVDSVCSGAMPGFAPEL 296 Query: 290 QLT-PRALEDVIPGYLLPRSPQQQFDFFRSTARR 322 + P +LE + P YL P+ + ++ R+TA R Sbjct: 297 GVPHPESLEAIAPTYLDPKYQESEYGPMRATAGR 330 >ref|YP_560784.1| hypothetical protein Bxe_A0199 [Burkholderia xenovorans LB400] gb|ABE32732.1| Conserved hypothetical protein [Burkholderia xenovorans LB400] Length = 317 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 167/323 (51%), Positives = 211/323 (65%), Gaps = 7/323 (2%) Query: 1 MAVKKILVIGGSGFIGTRLIELLGSTTGYRIMVPTRRYERAKHLLVSPVVSVVQANIHDD 60 M K I +IGGSGFIG+ L+ L G + + TRR A+HL + P+ V++A++ D Sbjct: 1 MRHKAIAIIGGSGFIGSHLVNAL-VEAGKDVRIATRRRYNARHLTLLPI-DVIEADVFDP 58 Query: 61 AVLARLVAEADVVINLVGILQSRPARGGAPYGPDFERQHVLLPRRIVAACVQQGVPRYLH 120 LAR V AD VINLV L + G PYGP+F R HV LP +IVAAC +GV R LH Sbjct: 59 VQLARFVEGADCVINLVATLH---GKRGTPYGPEFARMHVELPTKIVAACEGKGVHRLLH 115 Query: 121 MSALCADAQGPSMYLRSKAAGEQEALASPALDVAIFRPSVVFGEGDNFINMFAGLNRLFP 180 +SAL AD GPSMY RSK GE+ A+ + L IFRPSVVFG D F+N FA L R+FP Sbjct: 116 VSALGADPNGPSMYTRSKGDGEK-AVHAANLAWTIFRPSVVFGPEDQFLNKFAFLQRMFP 174 Query: 181 VIPLGSPDARFQPVYVGDVAQAFVNALALPRLGGKVFELGGPKQYSLRELVRLSGWYSGH 240 VIPL PDA+FQPVYVGDVA+A VN L L GG+ +ELGGP Y+L +LV+ G G Sbjct: 175 VIPLAMPDAKFQPVYVGDVAKAIVNVLDLDAAGGRTYELGGPTVYALEDLVKYCGDVIGK 234 Query: 241 PRPVIGLPDAAGWLQAFALEHLPGK-LMSRDNVASMKVDNVLHGPIAPELQLTPRALEDV 299 +I LP+A LQA E PG+ ++SRDN+ SMKVDNVL GP+APEL + P ++E + Sbjct: 235 HARIIRLPEAFARLQALTFEMAPGEPVISRDNLDSMKVDNVLSGPLAPELGIEPASIETI 294 Query: 300 IPGYLLPRSPQQQFDFFRSTARR 322 P YL S + +FD FR++A R Sbjct: 295 APIYLTGASTRSRFDTFRASAGR 317