BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5401.p (443 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777659.1| tRNA nucleotidyltransferase [Herbaspirillum ... 731 0.0 ref|YP_004754667.1| tRNA nucleotidyltransferase [Collimonas fung... 608 e-172 ref|YP_001101177.1| tRNA nucleotidyl transferase [Herminiimonas ... 578 e-163 ref|YP_003050246.1| polynucleotide adenylyltransferase/metal dep... 558 e-157 ref|YP_001354880.1| tRNA nucleotidyltransferase [Janthinobacteri... 556 e-156 >ref|YP_003777659.1| tRNA nucleotidyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ65751.1| tRNA nucleotidyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 410 Score = 731 bits (1886), Expect = 0.0, Method: Composition-based stats. Identities = 376/409 (91%), Positives = 392/409 (95%) Query: 34 MKTYTVGGAVRDGLLGLPVKDRDHVVVGATPQQLLELGFRPVGKDFPVFLHPDTHEEYAL 93 MKTYTVGGAVRDGLLGLPVKDRDHVVVGATP+QLL LGFRPVGKDFPVFLHP T EEYAL Sbjct: 1 MKTYTVGGAVRDGLLGLPVKDRDHVVVGATPEQLLALGFRPVGKDFPVFLHPHTQEEYAL 60 Query: 94 ARTERKTAPGYKGFAFHAAPDVTLEDDLARRDLTINAIAQDEDGTLVDPYHGRADLEARV 153 ARTERKTAPGYKGFAFHAAPDVTLEDDLARRDLTINAIAQDEDGTLVDPYHGRAD+ ARV Sbjct: 61 ARTERKTAPGYKGFAFHAAPDVTLEDDLARRDLTINAIAQDEDGTLVDPYHGRADIAARV 120 Query: 154 FRHVSEAFVEDPVRILRVARFAARFADFTVAPETNALMQRMVQEGEVDALVPERVWQELA 213 FRHVS+AF+EDPVRILRVARFAARFADFTVAPETNALMQRMV++GEVDALVPERVWQEL+ Sbjct: 121 FRHVSDAFIEDPVRILRVARFAARFADFTVAPETNALMQRMVEQGEVDALVPERVWQELS 180 Query: 214 RGLMEHKPSRMFEVLRACGALQRILPELDALWGVPQPEKWHPEIDTGVHVMLVVDWAAAQ 273 RGLME KPSRMFEVLRACGALQRILPELDALWGVPQPEKWHPEIDTGVHVMLVVDWAAAQ Sbjct: 181 RGLMEQKPSRMFEVLRACGALQRILPELDALWGVPQPEKWHPEIDTGVHVMLVVDWAAAQ 240 Query: 274 DFSLPIRFAALLHDLGKGTTPPEIWPRHHGHEARSERLAEDVCTRLKVPGECRDLALMTA 333 F+LPIRFAAL+HDLGKGTTPPE+WPRHHGHEARSERLAE VC RLKVPGECRDLALMTA Sbjct: 241 GFTLPIRFAALMHDLGKGTTPPEMWPRHHGHEARSERLAEQVCARLKVPGECRDLALMTA 300 Query: 334 REHGNVGRSFEMRPDTLVKFFARCDAFRKPQRFVDMLRASECDHRGRTGLELQPFPQAAY 393 REHGNVGR+FEMRPDTLVKFF+RCDAFRKPQRF+DMLRA+ECDHRGRTGLE QPFPQAAY Sbjct: 301 REHGNVGRAFEMRPDTLVKFFSRCDAFRKPQRFIDMLRAAECDHRGRTGLEQQPFPQAAY 360 Query: 394 LEGALQAAQAIDAGAIAQQQAQPQRIPEAILAARTAQVAAYVEQHRPAQ 442 LEGALQAAQ IDAGAIAQ Q+QPQRIPEAI AART QVAA+V QH Q Sbjct: 361 LEGALQAAQQIDAGAIAQAQSQPQRIPEAIQAARTEQVAAFVAQHGAQQ 409 >ref|YP_004754667.1| tRNA nucleotidyltransferase [Collimonas fungivorans Ter331] gb|AAT42393.1| tRNA nucleotidyltransferase polyA polymerase [Collimonas fungivorans Ter331] gb|AEK63844.1| tRNA nucleotidyltransferase [Collimonas fungivorans Ter331] Length = 408 Score = 608 bits (1567), Expect = e-172, Method: Composition-based stats. Identities = 311/407 (76%), Positives = 342/407 (84%), Gaps = 1/407 (0%) Query: 34 MKTYTVGGAVRDGLLGLPVKDRDHVVVGATPQQLLELGFRPVGKDFPVFLHPDTHEEYAL 93 MK + VGGAVRD LLGLPVKDRD+VVVGATP +L GFRPVGKDFPVFLHPDTHEEYAL Sbjct: 1 MKVFAVGGAVRDELLGLPVKDRDYVVVGATPDDMLAQGFRPVGKDFPVFLHPDTHEEYAL 60 Query: 94 ARTERKTAPGYKGFAFHAAPDVTLEDDLARRDLTINAIAQDEDGTLVDPYHGRADLEARV 153 ARTERKTAPGYKGF FH PDVTLE DL RRDLTINAIA+ DGT+ DP++GR DL+ RV Sbjct: 61 ARTERKTAPGYKGFVFHTDPDVTLEQDLVRRDLTINAIARAGDGTVADPFNGRRDLQDRV 120 Query: 154 FRHVSEAFVEDPVRILRVARFAARFADFTVAPETNALMQRMVQEGEVDALVPERVWQELA 213 FRHVS+AF EDPVRILRVARFAARF DFTVAPETNALMQRMV GEVDALVPERVWQELA Sbjct: 121 FRHVSDAFAEDPVRILRVARFAARFTDFTVAPETNALMQRMVAAGEVDALVPERVWQELA 180 Query: 214 RGLMEHKPSRMFEVLRACGALQRILPELDALWGVPQPEKWHPEIDTGVHVMLVVDWAAAQ 273 RGLME +PSRMFEVLRACGAL RILPELD LWG+PQPEK+HPEIDTGVHVM+VVD AAA+ Sbjct: 181 RGLMESRPSRMFEVLRACGALARILPELDVLWGIPQPEKYHPEIDTGVHVMMVVDTAAAE 240 Query: 274 DFSLPIRFAALLHDLGKGTTPPEIWPRHHGHEARSERLAEDVCTRLKVPGECRDLALMTA 333 + +LP+RFAAL+HDLGKG TP WP HHGHE L E VC RLKVPGE RDLALMTA Sbjct: 241 NHALPVRFAALVHDLGKGATPAAGWPSHHGHEGLGVELVERVCQRLKVPGEARDLALMTA 300 Query: 334 REHGNVGRSFEMRPDTLVKFFARCDAFRKPQRFVDMLRASECDHRGRTGLELQPFPQAAY 393 REHGNVGR+FE+R +T+V RCDAFRKPQRFVDMLRA+ECD+RGR G +PFPQ AY Sbjct: 301 REHGNVGRAFELRANTIVNLLGRCDAFRKPQRFVDMLRATECDYRGRAGYAGKPFPQLAY 360 Query: 394 LEGALQAAQAIDAGAIAQQ-QAQPQRIPEAILAARTAQVAAYVEQHR 439 L+ AL+AAQ+++AG IA Q QPQRIPEAI AAR V V+ R Sbjct: 361 LQAALKAAQSVNAGVIAGMFQQQPQRIPEAIHAARVEMVEQVVQAQR 407 >ref|YP_001101177.1| tRNA nucleotidyl transferase [Herminiimonas arsenicoxydans] sp|A4G969|CCA_HERAR RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase emb|CAL63056.1| Multifunctional CCA protein [Includes: CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT); 2'-nucleotidase; 2', 3'-cyclic phosphodiesterase; Phosphatase] [Herminiimonas arsenicoxydans] Length = 414 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 292/409 (71%), Positives = 334/409 (81%), Gaps = 5/409 (1%) Query: 34 MKTYTVGGAVRDGLLGLPVKDRDHVVVGATPQQLLELGFRPVGKDFPVFLHPDTHEEYAL 93 MK Y VGGAVRD LLG+ VKDRD+VVVGATP+Q++ + PVGKDFPVFLHP THEEYAL Sbjct: 1 MKIYIVGGAVRDELLGVAVKDRDYVVVGATPEQMIAQNYTPVGKDFPVFLHPVTHEEYAL 60 Query: 94 ARTERKTAPGYKGFAFHAAPDVTLEDDLARRDLTINAIAQDEDGTLVDPYHGRADLEARV 153 ARTERKTAPGYKGF FH VTLE+DL RRDLT+NA+A+D DG ++DP+ GR DLE ++ Sbjct: 61 ARTERKTAPGYKGFVFHTDAGVTLEEDLIRRDLTVNAMAKDADGRIIDPFGGRRDLEQKI 120 Query: 154 FRHVSEAFVEDPVRILRVARFAARFADFTVAPETNALMQRMVQEGEVDALVPERVWQELA 213 FRHVS AF EDPVRILRVARFAARF F+VA ETNALMQ MV GEVDALVPER WQELA Sbjct: 121 FRHVSSAFAEDPVRILRVARFAARFPQFSVAAETNALMQAMVAAGEVDALVPERTWQELA 180 Query: 214 RGLMEHKPSRMFEVLRACGALQRILPELDALWGVPQPEKWHPEIDTGVHVMLVVDWAAAQ 273 RGLME +PSRMF VLR CGALQR+LPELDALWGVPQPEK+HPEIDTGVHVM+VVD AA Q Sbjct: 181 RGLMEVQPSRMFAVLRDCGALQRMLPELDALWGVPQPEKYHPEIDTGVHVMMVVDHAAQQ 240 Query: 274 DFSLPIRFAALLHDLGKGTTPPEIWPRHHGHEARSERLAEDVCTRLKVPGECRDLALMTA 333 + +LPIR AAL HDLGKG TPPE+WPRHHGHE +S +L E VC RLK+P +CRDL++MTA Sbjct: 241 NLALPIRCAALFHDLGKGVTPPEMWPRHHGHEMQSAKLVETVCQRLKIPNDCRDLSVMTA 300 Query: 334 REHGNVGRSFEMRPDTLVKFFARCDAFRKPQRFVDMLRASECDHRGRTGLELQPFPQAAY 393 REHGN+GR+ E+R T+V F RCDAFRKPQRF+DML+ASECDHRGRTG PFPQ AY Sbjct: 301 REHGNIGRALELRAATIVTLFERCDAFRKPQRFIDMLQASECDHRGRTGFADVPFPQNAY 360 Query: 394 LEGALQAAQAIDAGAIA---QQQ--AQPQRIPEAILAARTAQVAAYVEQ 437 ++ AL AAQ ++ G IA QQ+ QP RIPEAI AR VA + + Sbjct: 361 MQKALAAAQTVNGGEIAALMQQRWPDQPARIPEAIHEARVKAVALAINE 409 >ref|YP_003050246.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Methylovorus glucosetrophus SIP3-4] gb|ACT49719.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase [Methylovorus glucosetrophus SIP3-4] Length = 407 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 282/394 (71%), Positives = 327/394 (82%) Query: 34 MKTYTVGGAVRDGLLGLPVKDRDHVVVGATPQQLLELGFRPVGKDFPVFLHPDTHEEYAL 93 M+T+ VGGAVRD LLGLPV+D+DHVVVG+TP ++ GFR VGKDFPVFLHPDTHEEYAL Sbjct: 1 MQTFVVGGAVRDALLGLPVQDQDHVVVGSTPAEMEAAGFRRVGKDFPVFLHPDTHEEYAL 60 Query: 94 ARTERKTAPGYKGFAFHAAPDVTLEDDLARRDLTINAIAQDEDGTLVDPYHGRADLEARV 153 ARTERKTA GYKGF HA+PDVTLE+DLARRDLTINAIA+ EDG+L+DPYHG+ADLEAR+ Sbjct: 61 ARTERKTAKGYKGFEVHASPDVTLEEDLARRDLTINAIARAEDGSLIDPYHGKADLEARI 120 Query: 154 FRHVSEAFVEDPVRILRVARFAARFADFTVAPETNALMQRMVQEGEVDALVPERVWQELA 213 RHVS AF EDPVRILR ARFAARF +FT+APET ALMQ+MV +GEVDALVPERVWQELA Sbjct: 121 LRHVSPAFAEDPVRILRAARFAARFTEFTLAPETLALMQQMVADGEVDALVPERVWQELA 180 Query: 214 RGLMEHKPSRMFEVLRACGALQRILPELDALWGVPQPEKWHPEIDTGVHVMLVVDWAAAQ 273 +GLME KPSRMFE+LRACGALQRI PELD LWGVPQP + HPEIDTGVHVM+V+D+AA+Q Sbjct: 181 KGLMEAKPSRMFEMLRACGALQRIFPELDRLWGVPQPAQHHPEIDTGVHVMMVIDYAASQ 240 Query: 274 DFSLPIRFAALLHDLGKGTTPPEIWPRHHGHEARSERLAEDVCTRLKVPGECRDLALMTA 333 +SLP+RFAAL HDLGKGTTPP+IWPRH GHE RS L +DV RL+VP +CR+LA + A Sbjct: 241 GYSLPVRFAALTHDLGKGTTPPDIWPRHIGHELRSVDLLKDVVKRLRVPNDCRELAQLVA 300 Query: 334 REHGNVGRSFEMRPDTLVKFFARCDAFRKPQRFVDMLRASECDHRGRTGLELQPFPQAAY 393 R HG V + MRPDTL+ F DA R+P RF D L+A ECD RGR G E + FP+AAY Sbjct: 301 RFHGKVHQVNAMRPDTLLHFLQELDALRQPTRFDDFLKACECDSRGRAGFEHKAFPEAAY 360 Query: 394 LEGALQAAQAIDAGAIAQQQAQPQRIPEAILAAR 427 L+ LQA +DAGAIA+Q + P+ I A+ AAR Sbjct: 361 LKHLLQAVMQVDAGAIARQFSHPEEIKNAVFAAR 394 >ref|YP_001354880.1| tRNA nucleotidyltransferase [Janthinobacterium sp. Marseille] sp|A6T2Y3|CCA_JANMA RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gb|ABR88984.1| tRNA nucleotidyltransferase [Janthinobacterium sp. Marseille] Length = 416 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 290/410 (70%), Positives = 332/410 (80%), Gaps = 5/410 (1%) Query: 34 MKTYTVGGAVRDGLLGLPVKDRDHVVVGATPQQLLELGFRPVGKDFPVFLHPDTHEEYAL 93 MKTY VGGAVRD LLG+ VKDRD+VVVGATP+ ++ G+ PVGKDFPVFLHP TH EYAL Sbjct: 1 MKTYIVGGAVRDELLGVAVKDRDYVVVGATPEAMVAQGYTPVGKDFPVFLHPKTHAEYAL 60 Query: 94 ARTERKTAPGYKGFAFHAAPDVTLEDDLARRDLTINAIAQDEDGTLVDPYHGRADLEARV 153 ARTERKTAPGYKGF FH VTLE+DL RRDLTINA+AQDEDG++VDP+ G+ DLE R+ Sbjct: 61 ARTERKTAPGYKGFVFHTDASVTLEEDLIRRDLTINAMAQDEDGSIVDPFGGKRDLELRI 120 Query: 154 FRHVSEAFVEDPVRILRVARFAARFADFTVAPETNALMQRMVQEGEVDALVPERVWQELA 213 FRHVS AF EDPVRILR+ARFAARF +FTVA ETN LMQ MV GEVDALVPERVWQELA Sbjct: 121 FRHVSPAFAEDPVRILRIARFAARFPEFTVAAETNTLMQDMVTAGEVDALVPERVWQELA 180 Query: 214 RGLMEHKPSRMFEVLRACGALQRILPELDALWGVPQPEKWHPEIDTGVHVMLVVDWAAAQ 273 RGLME +PSRMFEVLR CGALQRILPELD LWGVPQP ++HPEIDTGVH+MLV+D+AA Sbjct: 181 RGLMEVRPSRMFEVLRDCGALQRILPELDVLWGVPQPAQYHPEIDTGVHIMLVIDYAAGI 240 Query: 274 DFSLPIRFAALLHDLGKGTTPPEIWPRHHGHEARSERLAEDVCTRLKVPGECRDLALMTA 333 LP+R AALLHDLGKG T P+ WPRHHGHE S +L + V RLK+P +CRDLALMTA Sbjct: 241 KADLPVRCAALLHDLGKGVTLPDQWPRHHGHEMHSVKLVDTVSKRLKIPNDCRDLALMTA 300 Query: 334 REHGNVGRSFEMRPDTLVKFFARCDAFRKPQRFVDMLRASECDHRGRTGLELQPFPQAAY 393 REHGNVGR+ E+R +T+V RCDAFRKPQRF++ML+ASECDHRGRTG +PFPQ AY Sbjct: 301 REHGNVGRALELRANTIVNLLERCDAFRKPQRFIEMLQASECDHRGRTGFADKPFPQKAY 360 Query: 394 LEGALQAAQAIDAGAIAQQQA-----QPQRIPEAILAARTAQVAAYVEQH 438 L+ AL AAQ ++ G IA+ Q QRIPEAI AR VAA +++ Sbjct: 361 LQAALAAAQTVNGGEIAELTRQRYPDQAQRIPEAIHEARVQAVAAALKKQ 410