BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5393.p (276 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777652.1| peptide chain release factor 1 [Herbaspirill... 493 e-138 ref|YP_001351903.1| peptide chain release factor 1 [Janthinobact... 473 e-131 emb|CAL60419.2| Peptide chain release factor 1 (RF-1) [Herminiim... 473 e-131 ref|YP_001098548.1| peptide chain release factor 1 [Herminiimona... 472 e-131 ref|YP_004754560.1| peptide chain release factor 1 [Collimonas f... 471 e-131 >ref|YP_003777652.1| peptide chain release factor 1 [Herbaspirillum seropedicae SmR1] gb|ADJ65744.1| peptide chain release factor 1 (RF-1) protein [Herbaspirillum seropedicae SmR1] Length = 359 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 256/264 (96%), Positives = 261/264 (98%) Query: 13 MQKMLLPKDPNDERNIFLEIRAGTGGDESALFAGDLLRMYTRYAERQRWQVEIVSASESE 72 +QKMLLPKDPNDERNIFLEIRAGTGGDESALFAGDLLRMYTRYAERQRWQVEIVSASESE Sbjct: 96 LQKMLLPKDPNDERNIFLEIRAGTGGDESALFAGDLLRMYTRYAERQRWQVEIVSASESE 155 Query: 73 LGGYKEVIARIAGFGAYSRLKFESGGHRVQRVPATETQGRIHTSACTVAVMPEADEVEDV 132 LGGYKEVIARI G GAYSRLKFESGGHRVQRVPATETQGRIHTSACTVAVMPEADEV DV Sbjct: 156 LGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATETQGRIHTSACTVAVMPEADEVGDV 215 Query: 133 DINPADLRIDTYRASGAGGQHINKTDSAVRITHLPTGIVVECQDDRSQHKNKAQAMKVLA 192 +INPAD+RIDTYRASGAGGQHINKTDSAVRITHLPTGIVVECQDDRSQHKNKAQAMKVLA Sbjct: 216 EINPADIRIDTYRASGAGGQHINKTDSAVRITHLPTGIVVECQDDRSQHKNKAQAMKVLA 275 Query: 193 ARIKDVQLREQQSKEAATRKSLIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDG 252 ARIKDVQLR+QQS+EAATRKSLIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDG Sbjct: 276 ARIKDVQLRQQQSEEAATRKSLIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDG 335 Query: 253 DLDELTNALITEHQAELLAQLGDD 276 DLDELTNALITEHQAELLAQLGDD Sbjct: 336 DLDELTNALITEHQAELLAQLGDD 359 >ref|YP_001351903.1| peptide chain release factor 1 [Janthinobacterium sp. Marseille] sp|A6SUF6|RF1_JANMA RecName: Full=Peptide chain release factor 1; Short=RF-1 gb|ABR88624.1| RF-1 peptide chain release factor [Janthinobacterium sp. Marseille] Length = 360 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 240/263 (91%), Positives = 253/263 (96%) Query: 13 MQKMLLPKDPNDERNIFLEIRAGTGGDESALFAGDLLRMYTRYAERQRWQVEIVSASESE 72 +QKMLLPKDPND+RNIFLEIRAGTGGDE+ALFAGDLLRMY+R+AER RWQ+E+VS S SE Sbjct: 96 LQKMLLPKDPNDDRNIFLEIRAGTGGDEAALFAGDLLRMYSRFAERNRWQIEMVSESASE 155 Query: 73 LGGYKEVIARIAGFGAYSRLKFESGGHRVQRVPATETQGRIHTSACTVAVMPEADEVEDV 132 +GGYKEVI RI GFGAYS+LKFESGGHRVQRVPATETQGRIHTSACTVA+MPEADEVEDV Sbjct: 156 VGGYKEVIVRIIGFGAYSKLKFESGGHRVQRVPATETQGRIHTSACTVAIMPEADEVEDV 215 Query: 133 DINPADLRIDTYRASGAGGQHINKTDSAVRITHLPTGIVVECQDDRSQHKNKAQAMKVLA 192 +INPADLRIDTYRASGAGGQHINKTDSAVRITH+PTGIVVECQDDRSQHKNKA A+KVLA Sbjct: 216 NINPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVECQDDRSQHKNKASALKVLA 275 Query: 193 ARIKDVQLREQQSKEAATRKSLIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDG 252 ARIKDVQLREQQSKEAATRKSLIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDG Sbjct: 276 ARIKDVQLREQQSKEAATRKSLIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDG 335 Query: 253 DLDELTNALITEHQAELLAQLGD 275 DL ELTNAL EHQAELLA LGD Sbjct: 336 DLTELTNALAAEHQAELLAALGD 358 >emb|CAL60419.2| Peptide chain release factor 1 (RF-1) [Herminiimonas arsenicoxydans] Length = 361 Score = 473 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 241/263 (91%), Positives = 252/263 (95%) Query: 13 MQKMLLPKDPNDERNIFLEIRAGTGGDESALFAGDLLRMYTRYAERQRWQVEIVSASESE 72 +QKMLLPKDPNDERNIFLEIRAGTGGDESALFAGDLLRMYTR+AER RWQ+E+VS S SE Sbjct: 97 LQKMLLPKDPNDERNIFLEIRAGTGGDESALFAGDLLRMYTRFAERNRWQIEMVSESASE 156 Query: 73 LGGYKEVIARIAGFGAYSRLKFESGGHRVQRVPATETQGRIHTSACTVAVMPEADEVEDV 132 +GGYKEVI RI G GAYS+LKFESGGHRVQRVPATETQGRIHTSACTVAVMPEADEVEDV Sbjct: 157 VGGYKEVIVRIVGNGAYSKLKFESGGHRVQRVPATETQGRIHTSACTVAVMPEADEVEDV 216 Query: 133 DINPADLRIDTYRASGAGGQHINKTDSAVRITHLPTGIVVECQDDRSQHKNKAQAMKVLA 192 +INPADLRIDTYRASGAGGQHINKTDSAVRITH+PTGIVVECQDDRSQHKNKA A+KVLA Sbjct: 217 NINPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVECQDDRSQHKNKASALKVLA 276 Query: 193 ARIKDVQLREQQSKEAATRKSLIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDG 252 ARIKDVQLREQQS+EAATRKSLIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDG Sbjct: 277 ARIKDVQLREQQSQEAATRKSLIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDG 336 Query: 253 DLDELTNALITEHQAELLAQLGD 275 DL ELTNAL EHQA+LLA LGD Sbjct: 337 DLTELTNALAAEHQADLLAALGD 359 >ref|YP_001098548.1| peptide chain release factor 1 [Herminiimonas arsenicoxydans] Length = 356 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 241/263 (91%), Positives = 252/263 (95%) Query: 13 MQKMLLPKDPNDERNIFLEIRAGTGGDESALFAGDLLRMYTRYAERQRWQVEIVSASESE 72 +QKMLLPKDPNDERNIFLEIRAGTGGDESALFAGDLLRMYTR+AER RWQ+E+VS S SE Sbjct: 92 LQKMLLPKDPNDERNIFLEIRAGTGGDESALFAGDLLRMYTRFAERNRWQIEMVSESASE 151 Query: 73 LGGYKEVIARIAGFGAYSRLKFESGGHRVQRVPATETQGRIHTSACTVAVMPEADEVEDV 132 +GGYKEVI RI G GAYS+LKFESGGHRVQRVPATETQGRIHTSACTVAVMPEADEVEDV Sbjct: 152 VGGYKEVIVRIVGNGAYSKLKFESGGHRVQRVPATETQGRIHTSACTVAVMPEADEVEDV 211 Query: 133 DINPADLRIDTYRASGAGGQHINKTDSAVRITHLPTGIVVECQDDRSQHKNKAQAMKVLA 192 +INPADLRIDTYRASGAGGQHINKTDSAVRITH+PTGIVVECQDDRSQHKNKA A+KVLA Sbjct: 212 NINPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVECQDDRSQHKNKASALKVLA 271 Query: 193 ARIKDVQLREQQSKEAATRKSLIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDG 252 ARIKDVQLREQQS+EAATRKSLIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDG Sbjct: 272 ARIKDVQLREQQSQEAATRKSLIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDG 331 Query: 253 DLDELTNALITEHQAELLAQLGD 275 DL ELTNAL EHQA+LLA LGD Sbjct: 332 DLTELTNALAAEHQADLLAALGD 354 >ref|YP_004754560.1| peptide chain release factor 1 [Collimonas fungivorans Ter331] gb|AEK63737.1| Peptide chain release factor 1 [Collimonas fungivorans Ter331] Length = 360 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 239/263 (90%), Positives = 251/263 (95%) Query: 13 MQKMLLPKDPNDERNIFLEIRAGTGGDESALFAGDLLRMYTRYAERQRWQVEIVSASESE 72 +QKMLLPKDPNDERNIFLEIRAGTGGDESALFAGDLLRMYTR+AER RWQVE+VS S SE Sbjct: 96 LQKMLLPKDPNDERNIFLEIRAGTGGDESALFAGDLLRMYTRFAERNRWQVEMVSESSSE 155 Query: 73 LGGYKEVIARIAGFGAYSRLKFESGGHRVQRVPATETQGRIHTSACTVAVMPEADEVEDV 132 +GGYKEVI R+ GFGAYS+LKFESGGHRVQRVPATETQGRIHTSACTVA+MPEADEV DV Sbjct: 156 VGGYKEVIVRVIGFGAYSKLKFESGGHRVQRVPATETQGRIHTSACTVAIMPEADEVGDV 215 Query: 133 DINPADLRIDTYRASGAGGQHINKTDSAVRITHLPTGIVVECQDDRSQHKNKAQAMKVLA 192 DINPAD+RIDTYRASGAGGQHINKTDSAVRITH+PTGIVVECQDDRSQHKNKA A+KVLA Sbjct: 216 DINPADIRIDTYRASGAGGQHINKTDSAVRITHMPTGIVVECQDDRSQHKNKASALKVLA 275 Query: 193 ARIKDVQLREQQSKEAATRKSLIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDG 252 ARIKD QLR QQSKEAATRKSLIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDG Sbjct: 276 ARIKDGQLRAQQSKEAATRKSLIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDG 335 Query: 253 DLDELTNALITEHQAELLAQLGD 275 DL+ELTNAL EHQA+LLA LGD Sbjct: 336 DLEELTNALAAEHQADLLAALGD 358