BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5392.p         (105 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777652.1| peptide chain release factor 1 [Herbaspirill...   156   1e-36
ref|YP_001351903.1| peptide chain release factor 1 [Janthinobact...   129   2e-28
emb|CAL60419.2| Peptide chain release factor 1 (RF-1) [Herminiim...   129   2e-28
ref|YP_001098548.1| peptide chain release factor 1 [Herminiimona...   121   3e-26
ref|ZP_08273720.1| Peptide chain release factor 1 [Oxalobacterac...   113   1e-23

>ref|YP_003777652.1| peptide chain release factor 1 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65744.1| peptide chain release factor 1 (RF-1) protein [Herbaspirillum
          seropedicae SmR1]
          Length = 359

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 89/97 (91%), Positives = 94/97 (96%)

Query: 1  MKPSMLAKLDQLAERLEELNSLLAQEDATSSMDNFRKMTREHAELGPLVALYHDYVQASE 60
          MKPSMLAKLDQLAERLEELNSLLAQEDAT+SMDNFRKMTREHAELGPLVALYH+YVQA+E
Sbjct: 1  MKPSMLAKLDQLAERLEELNSLLAQEDATASMDNFRKMTREHAELGPLVALYHEYVQAAE 60

Query: 61 DIRTAGELLSDPDMKAFAQEEIDGAKARMEALELDAE 97
          DIRTA ELL+DPDMKAFAQEEIDGAKARME LELD +
Sbjct: 61 DIRTAQELLADPDMKAFAQEEIDGAKARMEGLELDLQ 97


>ref|YP_001351903.1| peptide chain release factor 1 [Janthinobacterium sp. Marseille]
 sp|A6SUF6|RF1_JANMA RecName: Full=Peptide chain release factor 1; Short=RF-1
 gb|ABR88624.1| RF-1 peptide chain release factor [Janthinobacterium sp.
          Marseille]
          Length = 360

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/97 (75%), Positives = 81/97 (83%)

Query: 1  MKPSMLAKLDQLAERLEELNSLLAQEDATSSMDNFRKMTREHAELGPLVALYHDYVQASE 60
          MKPSMLAKLDQL ERL+ELN LL QEDATS+MDN+RKMTREHAELGPLVALY +Y QA  
Sbjct: 1  MKPSMLAKLDQLTERLDELNVLLMQEDATSNMDNYRKMTREHAELGPLVALYGNYRQADS 60

Query: 61 DIRTAGELLSDPDMKAFAQEEIDGAKARMEALELDAE 97
          DI+ A  +LSDPDMK FAQEEI  AK RME LE+D +
Sbjct: 61 DIQDAQGMLSDPDMKEFAQEEIAAAKTRMEQLEIDLQ 97


>emb|CAL60419.2| Peptide chain release factor 1 (RF-1) [Herminiimonas
          arsenicoxydans]
          Length = 361

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/97 (75%), Positives = 80/97 (82%)

Query: 1  MKPSMLAKLDQLAERLEELNSLLAQEDATSSMDNFRKMTREHAELGPLVALYHDYVQASE 60
          MKPSMLAKLDQL ERL ELN LL QEDATS+MDN+RKMTREHAELGPLVALY +Y QA  
Sbjct: 2  MKPSMLAKLDQLTERLAELNVLLMQEDATSNMDNYRKMTREHAELGPLVALYGNYTQADN 61

Query: 61 DIRTAGELLSDPDMKAFAQEEIDGAKARMEALELDAE 97
          DI+ A  +LSDPDMK FAQEE+  AK RME LELD +
Sbjct: 62 DIKDAQGMLSDPDMKEFAQEEMAAAKTRMEQLELDLQ 98


>ref|YP_001098548.1| peptide chain release factor 1 [Herminiimonas arsenicoxydans]
          Length = 356

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 69/93 (74%), Positives = 76/93 (81%)

Query: 5  MLAKLDQLAERLEELNSLLAQEDATSSMDNFRKMTREHAELGPLVALYHDYVQASEDIRT 64
          MLAKLDQL ERL ELN LL QEDATS+MDN+RKMTREHAELGPLVALY +Y QA  DI+ 
Sbjct: 1  MLAKLDQLTERLAELNVLLMQEDATSNMDNYRKMTREHAELGPLVALYGNYTQADNDIKD 60

Query: 65 AGELLSDPDMKAFAQEEIDGAKARMEALELDAE 97
          A  +LSDPDMK FAQEE+  AK RME LELD +
Sbjct: 61 AQGMLSDPDMKEFAQEEMAAAKTRMEQLELDLQ 93


>ref|ZP_08273720.1| Peptide chain release factor 1 [Oxalobacteraceae bacterium
          IMCC9480]
 gb|EGF32798.1| Peptide chain release factor 1 [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 360

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 64/97 (65%), Positives = 74/97 (76%)

Query: 1  MKPSMLAKLDQLAERLEELNSLLAQEDATSSMDNFRKMTREHAELGPLVALYHDYVQASE 60
          MKPSML KLDQLA+RL ELN LL QED  S MDN+RK+TREHAELGPLV LY  +  A  
Sbjct: 1  MKPSMLVKLDQLADRLGELNELLTQEDLASDMDNYRKLTREHAELGPLVELYDSFRVAEA 60

Query: 61 DIRTAGELLSDPDMKAFAQEEIDGAKARMEALELDAE 97
          DI TA ++L+DPDMK FAQEEI  A+AR E +E D +
Sbjct: 61 DIATAHDMLADPDMKDFAQEEILAARARTEQIEADLQ 97