BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5390.p (233 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777650.1| two component response regulator protein [He... 266 3e-69 ref|YP_004754556.1| putative Two-component system response regul... 136 2e-30 ref|YP_001098552.1| two-component system response regulator [Her... 128 6e-28 ref|YP_001351907.1| two-components system response regulator [Ja... 128 8e-28 ref|ZP_08019718.1| DNA-binding response regulator [Lautropia mir... 126 2e-27 >ref|YP_003777650.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65742.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 266 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 148/233 (63%), Positives = 182/233 (78%) Query: 1 MKIGILSKDADTVTLVTQLADRHDCQVYSGVEGFAAACADRANLVVLDLDDLQRHQHAVT 60 MKIG+LS DADTV+LV+QL HDC + +E + AD A L+VLDLDDL + Sbjct: 1 MKIGLLSSDADTVSLVSQLGYPHDCTHCTSLEELTSLSADGAQLLVLDLDDLLPQADELV 60 Query: 61 TIVHDHRPPVRSKVRPLVLLICTPAHQHWLRNLRLAGADDFLVKPVRRQELALRLDLLLL 120 +V RPP+ + P VLL+ TPAHQ WL LR AGA + LVKP+RRQELALR+DLL+ Sbjct: 61 ELVRRLRPPLATGPAPAVLLLATPAHQDWLWALRQAGAQELLVKPLRRQELALRMDLLMR 120 Query: 121 AAQPYEAPPNIVEAAGFMVDLARLRITHPERPGLDATLTRKEVELALLFMQHLGRPLSRA 180 A+P EA ++ A GF++DLARLR+THP+RP L+A+LTRKE ELALLF+Q+LGRPLSRA Sbjct: 121 TAEPAEAQTRVIAAGGFLLDLARLRVTHPQRPELEASLTRKEAELALLFLQNLGRPLSRA 180 Query: 181 FLQERIWGAEPDTPTRTIDTHVSRIRTKLKLHPGNGYQLATVYGYGYQLERLE 233 FLQE++WGAEP+ PTRTIDTHVSR+RTKL L PG+GY+LATVYGYGYQLERL+ Sbjct: 181 FLQEKVWGAEPELPTRTIDTHVSRVRTKLGLQPGHGYRLATVYGYGYQLERLD 233 >ref|YP_004754556.1| putative Two-component system response regulator with CheY-like receiver domain [Collimonas fungivorans Ter331] gb|AEK63733.1| Putative Two-component system response regulator with CheY-like receiver domain [Collimonas fungivorans Ter331] Length = 229 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 87/235 (37%), Positives = 129/235 (54%), Gaps = 11/235 (4%) Query: 1 MKIGILSKDADTVTLVTQL--ADRHDCQVY-SGVEGFAAACADRANLVVLDLDDLQRHQH 57 M+I +L D LV Q+ + H C + SG E + +++VLD Sbjct: 1 MRIAVLDDDPSQTDLVCQVLTSSGHICHPFQSGKEILNQLRRESYDMLVLDWQVPDLSGP 60 Query: 58 AVTTIVHDHRPPVRSKVRPLVLLICTPAHQHWLRNLRLAGADDFLVKPVRRQELALRLDL 117 V V D P K P++ + + L AGADD+++KP+RR EL R+ Sbjct: 61 EVLRWVRDKLP----KTIPVLFITSRSGEDDIVEGLA-AGADDYMIKPIRRSELVARVQA 115 Query: 118 LLLAAQPYEAPPNIVEAAGFMVDLARLRITHPERPGLDATLTRKEVELALLFMQHLGRPL 177 LL A P + + ++ + R+T +P +T+KE +LALLF ++LGRPL Sbjct: 116 LLRRAYPIQNSSEQIVFNDYLFETRSGRLTLAGKP---IEITQKEFDLALLFFRNLGRPL 172 Query: 178 SRAFLQERIWGAEPDTPTRTIDTHVSRIRTKLKLHPGNGYQLATVYGYGYQLERL 232 SRA++ E +W + D P+RT+DTHVSR+R+KL+L P NGY+LA VY YGY+LE+L Sbjct: 173 SRAYILEAVWSRDVDIPSRTMDTHVSRVRSKLQLRPENGYRLAPVYSYGYRLEQL 227 >ref|YP_001098552.1| two-component system response regulator [Herminiimonas arsenicoxydans] emb|CAL60423.1| Putative two component system, response regulator CheY-like [Herminiimonas arsenicoxydans] Length = 229 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 63/137 (45%), Positives = 95/137 (69%), Gaps = 3/137 (2%) Query: 96 AGADDFLVKPVRRQELALRLDLLLLAAQPYEAPPNIVEAAGFMVDLARLRITHPERPGLD 155 AGADD+++KP+RR EL R+ LL A P + P ++ F+ + R+T P Sbjct: 94 AGADDYMIKPIRRGELLARVQALLRRAYPSQNPIEQIQFGNFIFEARTGRLTMSGTP--- 150 Query: 156 ATLTRKEVELALLFMQHLGRPLSRAFLQERIWGAEPDTPTRTIDTHVSRIRTKLKLHPGN 215 +T+KE +LALLF ++LGRPLSRA++ E +W + + P+RT+DTHVSR+R+KL+L P + Sbjct: 151 IEVTQKEFDLALLFFRNLGRPLSRAYILEAVWARDVEIPSRTMDTHVSRVRSKLQLRPEH 210 Query: 216 GYQLATVYGYGYQLERL 232 G++LA VY YGY+LE++ Sbjct: 211 GFRLAPVYSYGYRLEQM 227 >ref|YP_001351907.1| two-components system response regulator [Janthinobacterium sp. Marseille] gb|ABR89904.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 63/137 (45%), Positives = 95/137 (69%), Gaps = 3/137 (2%) Query: 96 AGADDFLVKPVRRQELALRLDLLLLAAQPYEAPPNIVEAAGFMVDLARLRITHPERPGLD 155 AGADD+++KP+RR EL R+ LL A P + P ++ F+ + R+T P Sbjct: 94 AGADDYMIKPIRRGELLARVQALLRRAYPSQNPIEQIQFGNFIFEARTGRLTMSGAP--- 150 Query: 156 ATLTRKEVELALLFMQHLGRPLSRAFLQERIWGAEPDTPTRTIDTHVSRIRTKLKLHPGN 215 +T+KE +LALLF ++LGRPLSRA++ E +W + + P+RT+DTHVSR+R+KL+L P + Sbjct: 151 IEVTQKEFDLALLFFRNLGRPLSRAYILEAVWARDVEIPSRTMDTHVSRVRSKLQLRPEH 210 Query: 216 GYQLATVYGYGYQLERL 232 G++LA VY YGY+LE++ Sbjct: 211 GFRLAPVYSYGYRLEQM 227 >ref|ZP_08019718.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599] gb|EFV93671.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599] Length = 244 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 87/235 (37%), Positives = 129/235 (54%), Gaps = 12/235 (5%) Query: 1 MKIGILSKDADTVT-LVTQLADRHD-CQVYSGVEGFAAACADRA-NLVVLDLDDLQRHQH 57 M+I I+ D + LV L+ D C +++ F AA + + ++DL Sbjct: 1 MRIAIIEDDKAVASQLVHSLSVEGDTCHLFNEAASFLAALPRESFDACIVDLMLPGMDGK 60 Query: 58 AVTTIVHDHRPPVRSKVRPLVLLICTPAHQHWLRNLRLAGADDFLVKPVRRQELALRLDL 117 A+ ++ + + P+ P+++L A + L AGADDF+VKP R EL RL Sbjct: 61 ALVRLLRERKNPL-----PVMVLTSQDAESEVISALD-AGADDFVVKPARAGELRARLKA 114 Query: 118 LLLAAQPYEAPPNIVEAAGFMVDLARLRITHPERPGLDATLTRKEVELALLFMQHLGRPL 177 L+ A + I E F DL R + G LT+KE +LALLF+ ++G+PL Sbjct: 115 LVRRAGLGDIHGTIFEYDRFRFDLQR---QTAQDSGRIVELTQKEFQLALLFLNNIGKPL 171 Query: 178 SRAFLQERIWGAEPDTPTRTIDTHVSRIRTKLKLHPGNGYQLATVYGYGYQLERL 232 SR ++E +WG + + P+RT+DTHVSR+R+KL L P +GY LA VY YGY+LERL Sbjct: 172 SRGHIREAVWGRDSEVPSRTMDTHVSRVRSKLTLRPESGYLLAPVYSYGYRLERL 226