BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5385.p         (91 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777645.1| plasmid maintenance system antidote protein ...   158   3e-37
ref|YP_552133.1| XRE family plasmid maintenance system antidote ...   138   3e-31
ref|YP_516133.1| XRE family plasmid maintenance system antidote ...   135   2e-30
ref|NP_778600.1| proteic killer active protein [Xylella fastidio...   110   9e-23
ref|NP_298010.1| proteic killer active protein [Xylella fastidio...   109   1e-22

>ref|YP_003777645.1| plasmid maintenance system antidote protein [Herbaspirillum
          seropedicae SmR1]
 gb|ADJ65737.1| plasmid maintenance system antidote protein [Herbaspirillum
          seropedicae SmR1]
          Length = 91

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 85/91 (93%), Positives = 86/91 (94%)

Query: 1  MTRMFNPPHPGEVLREYLGEMTVTEAAMRLGVARVTLQRIVNGAAGISPDMAYRLAAAFG 60
          M RMFNPPHPGEVLREYLGEMTVTEAAMRLGV+RVTLQRIVNGAAGISPDMAYRLAAAFG
Sbjct: 1  MNRMFNPPHPGEVLREYLGEMTVTEAAMRLGVSRVTLQRIVNGAAGISPDMAYRLAAAFG 60

Query: 61 TSPELWAGMQLQYDLHEAGKLARPVIERITA 91
          TSPELWAGMQLQYDLH A KL RP IERITA
Sbjct: 61 TSPELWAGMQLQYDLHAASKLERPPIERITA 91


>ref|YP_552133.1| XRE family plasmid maintenance system antidote protein
          [Polaromonas sp. JS666]
 gb|ABE47235.1| plasmid maintenance system antidote protein, XRE family
          [Polaromonas sp. JS666]
          Length = 94

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 69/91 (75%), Positives = 80/91 (87%)

Query: 1  MTRMFNPPHPGEVLREYLGEMTVTEAAMRLGVARVTLQRIVNGAAGISPDMAYRLAAAFG 60
          MTRM NPPHPGEVLREYLGE+TVTEAA++LGV RVTL R+V G++GISPDMAYRL  AFG
Sbjct: 1  MTRMHNPPHPGEVLREYLGEITVTEAALQLGVNRVTLSRVVTGSSGISPDMAYRLGDAFG 60

Query: 61 TSPELWAGMQLQYDLHEAGKLARPVIERITA 91
          TS ELWAGMQ+QYDL++AGK+ RP I R+ A
Sbjct: 61 TSAELWAGMQMQYDLYQAGKMKRPKIRRMAA 91


>ref|YP_516133.1| XRE family plasmid maintenance system antidote protein
          [Rhodoferax ferrireducens T118]
 gb|ABD72135.1| plasmid maintenance system antidote protein, XRE family
          [Rhodoferax ferrireducens T118]
          Length = 91

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/91 (76%), Positives = 79/91 (86%)

Query: 1  MTRMFNPPHPGEVLREYLGEMTVTEAAMRLGVARVTLQRIVNGAAGISPDMAYRLAAAFG 60
          MTRM NPPHPGEVLREYLG+ T+TEAAM+LGV RVTL RIV G +GIS DMAYRL+AAFG
Sbjct: 1  MTRMHNPPHPGEVLREYLGDTTITEAAMKLGVNRVTLTRIVTGVSGISADMAYRLSAAFG 60

Query: 61 TSPELWAGMQLQYDLHEAGKLARPVIERITA 91
          TS ELWAGMQ+QYDL +AGK+ RP IER+ A
Sbjct: 61 TSAELWAGMQMQYDLWQAGKVKRPRIERMAA 91


>ref|NP_778600.1| proteic killer active protein [Xylella fastidiosa Temecula1]
 ref|ZP_00651865.1| Helix-turn-helix motif [Xylella fastidiosa Dixon]
 ref|ZP_00682894.1| Helix-turn-helix motif [Xylella fastidiosa Ann-1]
 ref|ZP_00683749.1| Helix-turn-helix motif [Xylella fastidiosa Ann-1]
 ref|YP_001829083.1| XRE family plasmid maintenance system antidote protein [Xylella
          fastidiosa M23]
 gb|AAO28249.1| proteic killer active protein [Xylella fastidiosa Temecula1]
 gb|EAO13188.1| Helix-turn-helix motif [Xylella fastidiosa Dixon]
 gb|EAO30730.1| Helix-turn-helix motif [Xylella fastidiosa Ann-1]
 gb|EAO31562.1| Helix-turn-helix motif [Xylella fastidiosa Ann-1]
 gb|ACB91809.1| plasmid maintenance system antidote protein, XRE family [Xylella
          fastidiosa M23]
 gb|ADN63360.1| XRE family plasmid maintenance system antidote protein [Xylella
          fastidiosa subsp. fastidiosa GB514]
 gb|EGO81155.1| Plasmid maintenance system antidote protein [Xylella fastidiosa
          EB92.1]
          Length = 91

 Score =  110 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 57/89 (64%), Positives = 65/89 (73%)

Query: 1  MTRMFNPPHPGEVLREYLGEMTVTEAAMRLGVARVTLQRIVNGAAGISPDMAYRLAAAFG 60
          M RM NP HPGEVLREYLGE+TVT AA +LGV+RV L RI+NG  GIS DMA RL  A G
Sbjct: 1  MKRMHNPAHPGEVLREYLGELTVTNAAAKLGVSRVALSRILNGTNGISADMALRLEDALG 60

Query: 61 TSPELWAGMQLQYDLHEAGKLARPVIERI 89
          TS E+WA MQ +YDL  A +  RP I R+
Sbjct: 61 TSAEMWAAMQFKYDLWVASQQPRPKITRL 89


>ref|NP_298010.1| proteic killer active protein [Xylella fastidiosa 9a5c]
 gb|AAF83530.1|AE003914_11 proteic killer active protein [Xylella fastidiosa 9a5c]
          Length = 91

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/89 (62%), Positives = 65/89 (73%)

Query: 1  MTRMFNPPHPGEVLREYLGEMTVTEAAMRLGVARVTLQRIVNGAAGISPDMAYRLAAAFG 60
          M RM NP HPGEVLREYLG++TVT AA +LGV+RV L RI+NGA GIS DMA RL  A G
Sbjct: 1  MKRMHNPAHPGEVLREYLGDLTVTNAAAKLGVSRVALSRILNGANGISADMALRLEDALG 60

Query: 61 TSPELWAGMQLQYDLHEAGKLARPVIERI 89
          TS E+W  MQ +YDL  A +  RP I R+
Sbjct: 61 TSAEMWVAMQFKYDLWVASQQPRPKITRL 89