BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5383.p (306 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777643.1| ABC transporter permease [Herbaspirillum ser... 482 e-134 ref|YP_004750884.1| putative transmembrane ABC transporter prote... 429 e-118 ref|YP_296705.1| inner-membrane translocator [Ralstonia eutropha... 417 e-114 ref|YP_582950.1| ABC transporter permease; inner membrane subuni... 414 e-114 ref|YP_004684729.1| ABC transporter permease [Cupriavidus necato... 409 e-112 >ref|YP_003777643.1| ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65735.1| ABC-type transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 299/306 (97%), Positives = 303/306 (99%) Query: 1 MEQLAPLIAASINAGTPLLLAAIGLLINERSGVLNLGAEGMMLVAAIAGFAVGYATKSPL 60 MEQLAPLIAASINAGTPLLLAAIGLLINERSGVLNLGAEGMMLVAAIAGFAVGY TKSPL Sbjct: 1 MEQLAPLIAASINAGTPLLLAAIGLLINERSGVLNLGAEGMMLVAAIAGFAVGYTTKSPL 60 Query: 61 LGFVAGAVCGMLMATLFAWLALRLATNQVATGLALSIFGAGLSAFVGQRFVGLALPAQPN 120 LGF+AGAVCGMLMATLFAWLALRLATNQVATGLALSIFGAGLSAFVGQRFVGLALPAQ Sbjct: 61 LGFMAGAVCGMLMATLFAWLALRLATNQVATGLALSIFGAGLSAFVGQRFVGLALPAQST 120 Query: 121 SIPLLGDIPFLGKALFHQHWMSYVAFALCLASIWFLYRTRAGLVLRAVGESPESAHALGY 180 S+PLLGD+PFLG+ALFHQHWMSYVAFALCLASIWFLYRTRAGLVLRAVGESPESAHALGY Sbjct: 121 SVPLLGDLPFLGQALFHQHWMSYVAFALCLASIWFLYRTRAGLVLRAVGESPESAHALGY 180 Query: 181 SVRGIRYLALLFGGACCGLAGAYMSLVYTPMWVEGLVAGRGWIALALTAFATWRPARVLL 240 SVRGIRYLALLFGGACCGLAGAYMSLVYTPMWVEGLVAGRGWIALALTAFATWRPARVLL Sbjct: 181 SVRGIRYLALLFGGACCGLAGAYMSLVYTPMWVEGLVAGRGWIALALTAFATWRPARVLL 240 Query: 241 GSLLFGGVTIAQFYLQGMGVTVPSQILSMAPYLATIVVLALISRNPDWIRLNMPASLGKP 300 GSLLFGGVTIAQFYLQGMGVTVPSQILSMAPYLATIVVLALISRNPDWIRLNMPASLGKP Sbjct: 241 GSLLFGGVTIAQFYLQGMGVTVPSQILSMAPYLATIVVLALISRNPDWIRLNMPASLGKP 300 Query: 301 FRPGAS 306 FRPGAS Sbjct: 301 FRPGAS 306 >ref|YP_004750884.1| putative transmembrane ABC transporter protein [Collimonas fungivorans Ter331] gb|AEK60061.1| putative transmembrane ABC transporter protein [Collimonas fungivorans Ter331] Length = 306 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 264/306 (86%), Positives = 284/306 (92%) Query: 1 MEQLAPLIAASINAGTPLLLAAIGLLINERSGVLNLGAEGMMLVAAIAGFAVGYATKSPL 60 MEQ A LIAASINAGTPLLLAA+GLLINER+GVLNLGAEGMMLVAAIAGFAVGY T SPL Sbjct: 1 MEQFASLIAASINAGTPLLLAALGLLINERAGVLNLGAEGMMLVAAIAGFAVGYTTHSPL 60 Query: 61 LGFVAGAVCGMLMATLFAWLALRLATNQVATGLALSIFGAGLSAFVGQRFVGLALPAQPN 120 LGF+AGA+ G+LMA LF+WLAL LATNQVATGLALSIFGAGLSAF+GQRFVGLALP+Q Sbjct: 61 LGFLAGALSGVLMAALFSWLALVLATNQVATGLALSIFGAGLSAFIGQRFVGLALPSQTL 120 Query: 121 SIPLLGDIPFLGKALFHQHWMSYVAFALCLASIWFLYRTRAGLVLRAVGESPESAHALGY 180 +IP+L DIPF+G+ALF QHWMSY+A LC A WF+YRTRAGLVLRAVGESPESAHALGY Sbjct: 121 AIPVLKDIPFIGQALFQQHWMSYLALLLCAAIGWFIYRTRAGLVLRAVGESPESAHALGY 180 Query: 181 SVRGIRYLALLFGGACCGLAGAYMSLVYTPMWVEGLVAGRGWIALALTAFATWRPARVLL 240 VR IR+ ALLFGGACCGLAGAY+SLVYTPMWVEGLV+GRGWIALALTAFATWRPARVLL Sbjct: 181 PVRWIRFAALLFGGACCGLAGAYLSLVYTPMWVEGLVSGRGWIALALTAFATWRPARVLL 240 Query: 241 GSLLFGGVTIAQFYLQGMGVTVPSQILSMAPYLATIVVLALISRNPDWIRLNMPASLGKP 300 G+LLFGGVTI QFYLQGMGVTVPSQILSM PY+ATIVVLALISRNPDWIRLNMPASLGKP Sbjct: 241 GALLFGGVTILQFYLQGMGVTVPSQILSMLPYVATIVVLALISRNPDWIRLNMPASLGKP 300 Query: 301 FRPGAS 306 F+P AS Sbjct: 301 FKPDAS 306 >ref|YP_296705.1| inner-membrane translocator [Ralstonia eutropha JMP134] gb|AAZ61861.1| nucleoside ABC transporter membrane protein [Ralstonia eutropha JMP134] Length = 306 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 249/304 (81%), Positives = 269/304 (88%) Query: 1 MEQLAPLIAASINAGTPLLLAAIGLLINERSGVLNLGAEGMMLVAAIAGFAVGYATKSPL 60 MEQLAPLIA +INAGTPLLLAA+GLLINERSGVLNLGAEGMMLVAA+AGF VGY T+ PL Sbjct: 1 MEQLAPLIATAINAGTPLLLAALGLLINERSGVLNLGAEGMMLVAAVAGFMVGYQTQQPL 60 Query: 61 LGFVAGAVCGMLMATLFAWLALRLATNQVATGLALSIFGAGLSAFVGQRFVGLALPAQPN 120 LGF+AGAV GMLMATLF+WLAL LATNQVATGLALSIFG GLSAF+GQRFVG A+PAQ Sbjct: 61 LGFLAGAVAGMLMATLFSWLALVLATNQVATGLALSIFGTGLSAFMGQRFVGFAMPAQAK 120 Query: 121 SIPLLGDIPFLGKALFHQHWMSYVAFALCLASIWFLYRTRAGLVLRAVGESPESAHALGY 180 S+P L DIPF+G A F HWM Y + LC A +WFL+RTRAGL LRA+GESPESAHALGY Sbjct: 121 SVPFLADIPFIGPAFFQHHWMVYFSLLLCFAIMWFLFRTRAGLTLRAIGESPESAHALGY 180 Query: 181 SVRGIRYLALLFGGACCGLAGAYMSLVYTPMWVEGLVAGRGWIALALTAFATWRPARVLL 240 VR IR+ ALLFGGACCGLAGAY+SLVYTPMWVE LVAGRGWIALALT FATWRP RVL+ Sbjct: 181 PVRTIRFGALLFGGACCGLAGAYLSLVYTPMWVENLVAGRGWIALALTTFATWRPGRVLV 240 Query: 241 GSLLFGGVTIAQFYLQGMGVTVPSQILSMAPYLATIVVLALISRNPDWIRLNMPASLGKP 300 G+ LFGGVTI QFYLQG+GV+VPSQ LSM PY ATIVVLALISRNP WIRLNMPASLGKP Sbjct: 241 GAWLFGGVTILQFYLQGIGVSVPSQFLSMLPYAATIVVLALISRNPAWIRLNMPASLGKP 300 Query: 301 FRPG 304 FRPG Sbjct: 301 FRPG 304 >ref|YP_582950.1| ABC transporter permease; inner membrane subunit [Cupriavidus metallidurans CH34] gb|ABF07681.1| ABC-type transporter, permease component; inner membrane subunit precursor [Cupriavidus metallidurans CH34] gb|EEE71386.1| predicted protein [Populus trichocarpa] Length = 306 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 247/304 (81%), Positives = 268/304 (88%) Query: 1 MEQLAPLIAASINAGTPLLLAAIGLLINERSGVLNLGAEGMMLVAAIAGFAVGYATKSPL 60 MEQLAPLIA +INAGTPLLLAA+GLLINER+GVLNLGAEGMMLVAA GF VGY T+SP+ Sbjct: 1 MEQLAPLIATAINAGTPLLLAALGLLINERAGVLNLGAEGMMLVAAAFGFMVGYQTQSPM 60 Query: 61 LGFVAGAVCGMLMATLFAWLALRLATNQVATGLALSIFGAGLSAFVGQRFVGLALPAQPN 120 LGFVAGAV GMLMATLF+WLAL LATNQVATGLALSIFG GLSAF+ QRFVG A+PAQ Sbjct: 61 LGFVAGAVAGMLMATLFSWLALVLATNQVATGLALSIFGTGLSAFIAQRFVGYAMPAQAK 120 Query: 121 SIPLLGDIPFLGKALFHQHWMSYVAFALCLASIWFLYRTRAGLVLRAVGESPESAHALGY 180 S+P L D+PF+G A F HWM Y + ALC A +WFL+RTRAGL LRA+GESPESAHALGY Sbjct: 121 SVPYLSDLPFVGPAFFQHHWMVYFSLALCFAIMWFLFRTRAGLTLRAIGESPESAHALGY 180 Query: 181 SVRGIRYLALLFGGACCGLAGAYMSLVYTPMWVEGLVAGRGWIALALTAFATWRPARVLL 240 VR IR+ ALLFGGACCGLAGAY+SLVYTPMWVE LVAGRGWIALALT FATWRP RVL+ Sbjct: 181 PVRWIRFCALLFGGACCGLAGAYLSLVYTPMWVENLVAGRGWIALALTTFATWRPGRVLI 240 Query: 241 GSLLFGGVTIAQFYLQGMGVTVPSQILSMAPYLATIVVLALISRNPDWIRLNMPASLGKP 300 G+ LFGGVTI QFYLQG+GV+VPSQ LSM PY ATIVVLALISRNP WIRLNMPASLGKP Sbjct: 241 GAWLFGGVTILQFYLQGIGVSVPSQFLSMLPYAATIVVLALISRNPAWIRLNMPASLGKP 300 Query: 301 FRPG 304 FRPG Sbjct: 301 FRPG 304 >ref|YP_004684729.1| ABC transporter permease [Cupriavidus necator N-1] gb|AEI76248.1| ABC transport system permease protein [Cupriavidus necator N-1] Length = 306 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 247/304 (81%), Positives = 269/304 (88%) Query: 1 MEQLAPLIAASINAGTPLLLAAIGLLINERSGVLNLGAEGMMLVAAIAGFAVGYATKSPL 60 MEQLAPLIA +INAGTPLLLAA+GLLINERSGVLNLGAEGMMLVAA+AGF VGY T+SPL Sbjct: 1 MEQLAPLIATAINAGTPLLLAALGLLINERSGVLNLGAEGMMLVAAVAGFMVGYQTQSPL 60 Query: 61 LGFVAGAVCGMLMATLFAWLALRLATNQVATGLALSIFGAGLSAFVGQRFVGLALPAQPN 120 LGF AGA+ GMLMATLF+WLAL LATNQVATGLALSIFG GLSAF+GQRFVG A+PAQ Sbjct: 61 LGFAAGALAGMLMATLFSWLALVLATNQVATGLALSIFGTGLSAFMGQRFVGHAMPAQAK 120 Query: 121 SIPLLGDIPFLGKALFHQHWMSYVAFALCLASIWFLYRTRAGLVLRAVGESPESAHALGY 180 ++P L D+PF G ALF HWM Y + LC A +WFL+RTRAGL LRA+GE+PESAHALGY Sbjct: 121 AVPGLADLPFFGPALFQHHWMVYFSLLLCFAIMWFLFRTRAGLTLRAIGEAPESAHALGY 180 Query: 181 SVRGIRYLALLFGGACCGLAGAYMSLVYTPMWVEGLVAGRGWIALALTAFATWRPARVLL 240 VR IR+ ALLFGGACCGLAGAY+SLVYTPMWVE LVAGRGWIALALT FATWRP RVL+ Sbjct: 181 PVRTIRFGALLFGGACCGLAGAYLSLVYTPMWVENLVAGRGWIALALTTFATWRPGRVLV 240 Query: 241 GSLLFGGVTIAQFYLQGMGVTVPSQILSMAPYLATIVVLALISRNPDWIRLNMPASLGKP 300 G+ LFGGVTI QFYLQG+GV+VPSQ LSM PY ATIVVLALISRNP WIRLNMPASLGKP Sbjct: 241 GAWLFGGVTILQFYLQGIGVSVPSQFLSMLPYAATIVVLALISRNPAWIRLNMPASLGKP 300 Query: 301 FRPG 304 FRPG Sbjct: 301 FRPG 304