BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5382.p (364 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777642.1| ABC transporter permease [Herbaspirillum ser... 580 e-163 ref|YP_004750883.1| putative transmembrane ABC transporter prote... 531 e-149 ref|YP_725451.1| ABC-type transporter, permease component [Ralst... 449 e-124 ref|YP_004684730.1| ABC transporter permease [Cupriavidus necato... 445 e-123 ref|YP_296704.1| inner-membrane translocator [Ralstonia eutropha... 437 e-120 >ref|YP_003777642.1| ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65734.1| ABC-type transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 364 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 350/364 (96%), Positives = 359/364 (98%) Query: 1 MAERMSFPLRLELRGAPSKTMTYLSPVIAIVATLFLGALLFLALGKDPLAGLKVFLVDPF 60 MAER+SFPLRLELRGAPS+TMTYLSPVIAIVATL LGALLFLALGKDPLAGLKVFL+DPF Sbjct: 1 MAERLSFPLRLELRGAPSRTMTYLSPVIAIVATLLLGALLFLALGKDPLAGLKVFLIDPF 60 Query: 61 NGKRAISELLLKSVPLILCALGLAVCFRASIWNIGAEGQFTVGALCSGAMLVWLDVPGHG 120 NGKRAISELLLKSVPLILCALGLAVCFRASIWNIGAEGQFTVGALCSGAMLVWLDVPGHG Sbjct: 61 NGKRAISELLLKSVPLILCALGLAVCFRASIWNIGAEGQFTVGALCSGAMLVWLDVPGHG 120 Query: 121 ISGGMGLVLMIVAGIIGGALWAGITAYLRDQFNANEILVSLMLTYVAQLLLMWAVNGPLK 180 +SGGMGLVLMIVAG+IGGALWA ITA+LRDQFNANEILVSLMLTYVAQLLLMWAVNGPLK Sbjct: 121 VSGGMGLVLMIVAGVIGGALWAAITAFLRDQFNANEILVSLMLTYVAQLLLMWAVNGPLK 180 Query: 181 DPNGMNFPQSKVFSGEFMLPMLMSGTRLHIGFAVAIVAAILMAIFMMRSLRGFSLMVGGV 240 DPNGMNFPQSKVFS EFMLP L+SGTRLHIGFAVAIVAA+LMAIFMMRSLRGFSLMVGGV Sbjct: 181 DPNGMNFPQSKVFSSEFMLPTLISGTRLHIGFAVAIVAAVLMAIFMMRSLRGFSLMVGGV 240 Query: 241 APHAARYAGFSARSALWVSLLISGAFAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAFI 300 APHAARYAGFSARSALWVSLLISGAFAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAFI Sbjct: 241 APHAARYAGFSARSALWVSLLISGAFAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAFI 300 Query: 301 GRLHPVGAILGGLIMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLACDTLIDYRLAW 360 GRLHP+GAILGGLIMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLACDTLIDYRLAW Sbjct: 301 GRLHPIGAILGGLIMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLACDTLIDYRLAW 360 Query: 361 KKKV 364 KKV Sbjct: 361 NKKV 364 >ref|YP_004750883.1| putative transmembrane ABC transporter protein [Collimonas fungivorans Ter331] gb|AEK60060.1| putative transmembrane ABC transporter protein [Collimonas fungivorans Ter331] Length = 368 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 307/358 (85%), Positives = 334/358 (93%) Query: 7 FPLRLELRGAPSKTMTYLSPVIAIVATLFLGALLFLALGKDPLAGLKVFLVDPFNGKRAI 66 +P +LELRG PS+TMTYLSPV+A+V T+ LGALLF+ALGKDPLAGLKVFL+DPFNGKRAI Sbjct: 11 WPWKLELRGTPSRTMTYLSPVLAVVLTMLLGALLFIALGKDPLAGLKVFLIDPFNGKRAI 70 Query: 67 SELLLKSVPLILCALGLAVCFRASIWNIGAEGQFTVGALCSGAMLVWLDVPGHGISGGMG 126 SELLLKS+PLILCALGLAVCFRA++WNIGAEGQFTVGA+C+GA LV +DVPGH I GG+G Sbjct: 71 SELLLKSIPLILCALGLAVCFRANVWNIGAEGQFTVGAMCAGAALVLIDVPGHAIPGGLG 130 Query: 127 LVLMIVAGIIGGALWAGITAYLRDQFNANEILVSLMLTYVAQLLLMWAVNGPLKDPNGMN 186 L LMIVAGI+GGA WAGITA LRD+FNANEILVSLMLTYVAQLLLM+AVNGPLKDPNGMN Sbjct: 131 LFLMIVAGILGGAFWAGITALLRDRFNANEILVSLMLTYVAQLLLMYAVNGPLKDPNGMN 190 Query: 187 FPQSKVFSGEFMLPMLMSGTRLHIGFAVAIVAAILMAIFMMRSLRGFSLMVGGVAPHAAR 246 FPQSKVFSGEFMLP L+SGTRLHIGFAV +V A +M +FM RSLRGFSL VGG APHAAR Sbjct: 191 FPQSKVFSGEFMLPALLSGTRLHIGFAVTLVLAAVMTVFMTRSLRGFSLFVGGAAPHAAR 250 Query: 247 YAGFSARSALWVSLLISGAFAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAFIGRLHPV 306 YAGFS+RSALW SLL+SG+FAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAFIGRLHPV Sbjct: 251 YAGFSSRSALWTSLLVSGSFAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAFIGRLHPV 310 Query: 307 GAILGGLIMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLACDTLIDYRLAWKKKV 364 GA+LGGL+MSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLA DTLIDYRL K KV Sbjct: 311 GAVLGGLVMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLASDTLIDYRLRRKAKV 368 >ref|YP_725451.1| ABC-type transporter, permease component [Ralstonia eutropha H16] emb|CAJ92083.1| ABC-type transporter, permease component [Ralstonia eutropha H16] Length = 369 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 246/354 (69%), Positives = 293/354 (82%) Query: 8 PLRLELRGAPSKTMTYLSPVIAIVATLFLGALLFLALGKDPLAGLKVFLVDPFNGKRAIS 67 PL L RG PS+TM Y SPV+A+ TL GALLFL LGKDP+A LKVFL DP +RAI Sbjct: 12 PLSLAPRGLPSRTMAYASPVVALALTLLFGALLFLVLGKDPVAALKVFLADPLRDQRAIG 71 Query: 68 ELLLKSVPLILCALGLAVCFRASIWNIGAEGQFTVGALCSGAMLVWLDVPGHGISGGMGL 127 E+LLK+VPL+LCALGL+VC+RA++WNIGA+GQ G +C+GA +++ DVPG ++G + L Sbjct: 72 EVLLKTVPLVLCALGLSVCYRANVWNIGADGQLIAGGICAGATVLYFDVPGQAMNGTVVL 131 Query: 128 VLMIVAGIIGGALWAGITAYLRDQFNANEILVSLMLTYVAQLLLMWAVNGPLKDPNGMNF 187 VL +AG++GG LWA +TA L+D+FNANEILVSLMLTY+AQ LL+W VNGPLKDPNGMNF Sbjct: 132 VLASLAGMVGGMLWASLTAVLKDRFNANEILVSLMLTYIAQQLLLWVVNGPLKDPNGMNF 191 Query: 188 PQSKVFSGEFMLPMLMSGTRLHIGFAVAIVAAILMAIFMMRSLRGFSLMVGGVAPHAARY 247 PQSKVFS E++LP LMSG+RLH GFAV +V +M +F+ RS G+ L VGG AP AARY Sbjct: 192 PQSKVFSSEYLLPNLMSGSRLHAGFAVMLVLVAVMTVFVFRSFAGYRLQVGGTAPAAARY 251 Query: 248 AGFSARSALWVSLLISGAFAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAFIGRLHPVG 307 AGFSARSALW +LLISGA AGLAGAFE+ GPIGQLLPS+SPGYGF AIIVAFIGRLHPVG Sbjct: 252 AGFSARSALWSALLISGATAGLAGAFEVTGPIGQLLPSISPGYGFTAIIVAFIGRLHPVG 311 Query: 308 AILGGLIMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLACDTLIDYRLAWK 361 + GG++MSL Y+GGE+AQSRLGLPSAI VFQGMLLF LLACDTLI+ RL W+ Sbjct: 312 TVFGGIMMSLFYIGGEMAQSRLGLPSAIGWVFQGMLLFFLLACDTLIENRLRWR 365 >ref|YP_004684730.1| ABC transporter permease [Cupriavidus necator N-1] gb|AEI76249.1| ABC transport system permease protein [Cupriavidus necator N-1] Length = 369 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 246/354 (69%), Positives = 292/354 (82%) Query: 8 PLRLELRGAPSKTMTYLSPVIAIVATLFLGALLFLALGKDPLAGLKVFLVDPFNGKRAIS 67 PL L RG PS+TM Y SPVIA+ TL GALLFL LGKDP+A LKVFL DP +RAI Sbjct: 12 PLSLTPRGLPSRTMAYASPVIALALTLLFGALLFLVLGKDPVAALKVFLADPLRDQRAIG 71 Query: 68 ELLLKSVPLILCALGLAVCFRASIWNIGAEGQFTVGALCSGAMLVWLDVPGHGISGGMGL 127 E+LLK+VPL+LCALGL+VC+RA++WNIGA+GQ G +C+GA +++ DVPG ++G + L Sbjct: 72 EVLLKTVPLVLCALGLSVCYRANVWNIGADGQLIAGGICAGATVLYFDVPGQAMNGTVVL 131 Query: 128 VLMIVAGIIGGALWAGITAYLRDQFNANEILVSLMLTYVAQLLLMWAVNGPLKDPNGMNF 187 VL +AG+IGG LWA +TA L+D+FNANEILVSLMLTY+AQ LL+W VNGPLKDPNGMNF Sbjct: 132 VLASLAGMIGGMLWASLTAVLKDRFNANEILVSLMLTYIAQQLLLWVVNGPLKDPNGMNF 191 Query: 188 PQSKVFSGEFMLPMLMSGTRLHIGFAVAIVAAILMAIFMMRSLRGFSLMVGGVAPHAARY 247 PQSKVFS ++LP LMSG+RLH+GF V +V +M +F+ RS G+ L VGG AP AARY Sbjct: 192 PQSKVFSSAYLLPNLMSGSRLHVGFVVMLVLVAVMTVFVFRSFAGYRLQVGGTAPAAARY 251 Query: 248 AGFSARSALWVSLLISGAFAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAFIGRLHPVG 307 AGFSARSALW +LLISGA AGLAGAFE+ GPIGQLLPS+SPGYGF AIIVAFIGRLHPVG Sbjct: 252 AGFSARSALWSALLISGATAGLAGAFEVTGPIGQLLPSISPGYGFTAIIVAFIGRLHPVG 311 Query: 308 AILGGLIMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLACDTLIDYRLAWK 361 + GG++MSL Y+GGE+AQSRLGLPSAI VFQGMLLF LLACDTLI+ RL W+ Sbjct: 312 TVFGGIMMSLFYIGGEMAQSRLGLPSAIGWVFQGMLLFFLLACDTLIENRLRWR 365 >ref|YP_296704.1| inner-membrane translocator [Ralstonia eutropha JMP134] gb|AAZ61860.1| nucleoside ABC transporter membrane protein [Ralstonia eutropha JMP134] Length = 369 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 244/354 (68%), Positives = 295/354 (83%) Query: 8 PLRLELRGAPSKTMTYLSPVIAIVATLFLGALLFLALGKDPLAGLKVFLVDPFNGKRAIS 67 P+ L RG PS+TM Y SPVIA+ TL GALLF+ALGKDP+A LKVFL DP KRAI Sbjct: 12 PITLAPRGLPSRTMAYASPVIALALTLLFGALLFIALGKDPMAALKVFLADPLRDKRAIG 71 Query: 68 ELLLKSVPLILCALGLAVCFRASIWNIGAEGQFTVGALCSGAMLVWLDVPGHGISGGMGL 127 E+LLK+VPL+LCALGL+VC+RA++WNIGA+GQ +G + +GA +++ DVPG ++G + L Sbjct: 72 EVLLKTVPLVLCALGLSVCYRANVWNIGADGQLILGGIFAGATVLYFDVPGQTLNGTVVL 131 Query: 128 VLMIVAGIIGGALWAGITAYLRDQFNANEILVSLMLTYVAQLLLMWAVNGPLKDPNGMNF 187 +L +AG+IGG WA ITA L+D+FNANEILVSLMLTY+AQ L++W VNGPLKDPNGMNF Sbjct: 132 MLASLAGVIGGMFWAAITALLKDRFNANEILVSLMLTYIAQQLMLWVVNGPLKDPNGMNF 191 Query: 188 PQSKVFSGEFMLPMLMSGTRLHIGFAVAIVAAILMAIFMMRSLRGFSLMVGGVAPHAARY 247 PQSKVFS E++LP LMSG+RLH GFAV +V ++M +F+ RS G+ L VGG AP AARY Sbjct: 192 PQSKVFSSEYLLPNLMSGSRLHAGFAVMLVLVVVMTVFIFRSFAGYRLQVGGTAPAAARY 251 Query: 248 AGFSARSALWVSLLISGAFAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAFIGRLHPVG 307 AGFS+RSALW +LLISGA AGLAGAFE+ GPIGQLLPS+SPGYGF AIIVAF+GRLHPVG Sbjct: 252 AGFSSRSALWSALLISGATAGLAGAFEVTGPIGQLLPSISPGYGFTAIIVAFVGRLHPVG 311 Query: 308 AILGGLIMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLACDTLIDYRLAWK 361 +LGG++MSL Y+GGE+AQSRLGLPSAI VFQGMLLF LLACDTLI+ RL W+ Sbjct: 312 TVLGGIMMSLFYIGGEMAQSRLGLPSAIGWVFQGMLLFFLLACDTLIENRLRWR 365