BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5380.p (282 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777640.1| nitrate/sulfonate/bicarbonate ABC transporte... 439 e-121 ref|ZP_08275795.1| Hydroxymethylpyrimidine ABC transporter, tran... 362 3e-98 ref|YP_001562170.1| binding-protein-dependent transport systems ... 342 5e-92 ref|ZP_04763849.1| binding-protein-dependent transport systems i... 339 3e-91 ref|YP_001790129.1| binding-protein-dependent transport systems ... 337 1e-90 >ref|YP_003777640.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65732.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 259 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 253/259 (97%), Positives = 254/259 (98%) Query: 24 MKTPFNGKLNRAATTLAPWILLLAILGVWQFICSVWQVSDFIFPSPASILQAMVDYAGPI 83 MKTPF GKLNRAATTLAPW LLL ILGVWQFICSVWQVSDFIFPSP SILQAMVDYAGPI Sbjct: 1 MKTPFQGKLNRAATTLAPWFLLLVILGVWQFICSVWQVSDFIFPSPGSILQAMVDYAGPI 60 Query: 84 TEHALSTFWVTMVGFAIAVAVGVTLGFVIGSSPVLYAAAYPLMTAFNALPKAAFVPVLVV 143 TEHALSTFWVTMVGFAIAV VGVTLGFVIGSSP+LYAAAYPLMTAFNALPKAAFVPVLVV Sbjct: 61 TEHALSTFWVTMVGFAIAVVVGVTLGFVIGSSPMLYAAAYPLMTAFNALPKAAFVPVLVV 120 Query: 144 WFGIGAGPAILTAFLISFFPIMVNIATGLATLEPELEDVLRVLGARRMDILLKVGLPRSM 203 WFGIGAGPAILTAFLISFFPIMVNIATGLATLEPELEDVLRVLGARRMDILLKVGLPRSM Sbjct: 121 WFGIGAGPAILTAFLISFFPIMVNIATGLATLEPELEDVLRVLGARRMDILLKVGLPRSM 180 Query: 204 PYFFASLKVAITLAFVGSTVSEMNASNQGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAM 263 PYFFASLKVAITLAFVGSTVSEMNASNQGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAM Sbjct: 181 PYFFASLKVAITLAFVGSTVSEMNASNQGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAM 240 Query: 264 YELFAIIEKRTTGWAHRGK 282 YELFAIIEKRTTGWAHRGK Sbjct: 241 YELFAIIEKRTTGWAHRGK 259 >ref|ZP_08275795.1| Hydroxymethylpyrimidine ABC transporter, transmembrane component [Oxalobacteraceae bacterium IMCC9480] gb|EGF30738.1| Hydroxymethylpyrimidine ABC transporter, transmembrane component [Oxalobacteraceae bacterium IMCC9480] Length = 257 Score = 362 bits (929), Expect = 3e-98, Method: Composition-based stats. Identities = 210/250 (84%), Positives = 228/250 (91%) Query: 32 LNRAATTLAPWILLLAILGVWQFICSVWQVSDFIFPSPASILQAMVDYAGPITEHALSTF 91 L A APW+LLL I+ +WQ ICSV+ VS+FIFPSP +I QAMV+YAGPI HA T+ Sbjct: 4 LRHTAERFAPWLLLLLIVLLWQAICSVFSVSEFIFPSPLAIGQAMVEYAGPIAGHAWRTY 63 Query: 92 WVTMVGFAIAVAVGVTLGFVIGSSPVLYAAAYPLMTAFNALPKAAFVPVLVVWFGIGAGP 151 WVTM GF IAVAVGV LGF IGSS LY+AAYPLMTAFNALPKAAFVP+LVVWFGIGAGP Sbjct: 64 WVTMAGFGIAVAVGVLLGFSIGSSAFLYSAAYPLMTAFNALPKAAFVPILVVWFGIGAGP 123 Query: 152 AILTAFLISFFPIMVNIATGLATLEPELEDVLRVLGARRMDILLKVGLPRSMPYFFASLK 211 AILTAFLI+FFPIMVNIATGLAT+EPE+EDVLRVLGARR+D+LLKVGLPRSMPYFFASLK Sbjct: 124 AILTAFLIAFFPIMVNIATGLATMEPEMEDVLRVLGARRIDVLLKVGLPRSMPYFFASLK 183 Query: 212 VAITLAFVGSTVSEMNASNQGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAMYELFAIIE 271 VAITLAFVGSTVSEMNASN+GIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAMYELFA+IE Sbjct: 184 VAITLAFVGSTVSEMNASNEGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAMYELFAVIE 243 Query: 272 KRTTGWAHRG 281 +RTTGWAHRG Sbjct: 244 RRTTGWAHRG 253 >ref|YP_001562170.1| binding-protein-dependent transport systems inner membrane component [Delftia acidovorans SPH-1] ref|YP_004490699.1| ABC transporter integral membrane protein [Delftia sp. Cs1-4] gb|ABX33785.1| binding-protein-dependent transport systems inner membrane component [Delftia acidovorans SPH-1] gb|AEF92344.1| ABC-type transporter, integral membrane subunit [Delftia sp. Cs1-4] Length = 255 Score = 342 bits (876), Expect = 5e-92, Method: Composition-based stats. Identities = 189/248 (76%), Positives = 218/248 (87%) Query: 34 RAATTLAPWILLLAILGVWQFICSVWQVSDFIFPSPASILQAMVDYAGPITEHALSTFWV 93 + A APW+LLLA++ +WQ ICS ++VS+FIFPSP +I + + +++G I HA T+WV Sbjct: 4 KYAERWAPWVLLLAVILLWQVICSAFEVSEFIFPSPWAIGRQLAEFSGIIAAHAWRTYWV 63 Query: 94 TMVGFAIAVAVGVTLGFVIGSSPVLYAAAYPLMTAFNALPKAAFVPVLVVWFGIGAGPAI 153 TM GF IA+ VGV LGF+IGSS + YAA YPLMTAFNALPKAAFVP+LVVWFGIGAGPAI Sbjct: 64 TMAGFGIAIVVGVLLGFLIGSSRLAYAAFYPLMTAFNALPKAAFVPILVVWFGIGAGPAI 123 Query: 154 LTAFLISFFPIMVNIATGLATLEPELEDVLRVLGARRMDILLKVGLPRSMPYFFASLKVA 213 LTAFLISFFPIMVNIATGLATLEPELEDVLRVLGARR D+L+KVGLPRSMPYF+ SLKVA Sbjct: 124 LTAFLISFFPIMVNIATGLATLEPELEDVLRVLGARRWDVLIKVGLPRSMPYFYGSLKVA 183 Query: 214 ITLAFVGSTVSEMNASNQGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAMYELFAIIEKR 273 ITLAFVG+TVSEM A+N+GIGYLLVSAGSSM+M LAFAGL+V+GAMAM MYELF+ IEKR Sbjct: 184 ITLAFVGTTVSEMTAANEGIGYLLVSAGSSMQMGLAFAGLIVVGAMAMVMYELFSAIEKR 243 Query: 274 TTGWAHRG 281 TTGWA RG Sbjct: 244 TTGWARRG 251 >ref|ZP_04763849.1| binding-protein-dependent transport systems inner membrane component [Acidovorax delafieldii 2AN] gb|EER59352.1| binding-protein-dependent transport systems inner membrane component [Acidovorax delafieldii 2AN] Length = 255 Score = 339 bits (869), Expect = 3e-91, Method: Composition-based stats. Identities = 187/248 (75%), Positives = 215/248 (86%) Query: 34 RAATTLAPWILLLAILGVWQFICSVWQVSDFIFPSPASILQAMVDYAGPITEHALSTFWV 93 + A +PWILL+AI+ +WQ +CS + VS+FIFPSP +I +V++ I HA TFWV Sbjct: 4 KTAERWSPWILLVAIVLLWQIVCSAFNVSEFIFPSPWAIGVQLVEFGDVIAGHAWRTFWV 63 Query: 94 TMVGFAIAVAVGVTLGFVIGSSPVLYAAAYPLMTAFNALPKAAFVPVLVVWFGIGAGPAI 153 TM GF IA+ VGV LGF+IGSS + YAA YPLMTAFNALPKAAFVP+LVVWFGIG GPAI Sbjct: 64 TMAGFGIAIVVGVLLGFLIGSSRLAYAAVYPLMTAFNALPKAAFVPILVVWFGIGVGPAI 123 Query: 154 LTAFLISFFPIMVNIATGLATLEPELEDVLRVLGARRMDILLKVGLPRSMPYFFASLKVA 213 LTAFLISFFPIMVNIATGLATLEPELEDVLRVLGA+R D+L KVGLPRSMPYF+ SLKVA Sbjct: 124 LTAFLISFFPIMVNIATGLATLEPELEDVLRVLGAKRWDVLTKVGLPRSMPYFYGSLKVA 183 Query: 214 ITLAFVGSTVSEMNASNQGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAMYELFAIIEKR 273 ITLAFVG+TVSEM A+N+GIGYLL+SAGSSM+M LAFAGL+V+GAMAMAMYELF+ +EKR Sbjct: 184 ITLAFVGTTVSEMTAANEGIGYLLISAGSSMQMGLAFAGLMVVGAMAMAMYELFSWVEKR 243 Query: 274 TTGWAHRG 281 TTGWAHRG Sbjct: 244 TTGWAHRG 251 >ref|YP_001790129.1| binding-protein-dependent transport systems inner membrane component [Leptothrix cholodnii SP-6] gb|ACB33364.1| binding-protein-dependent transport systems inner membrane component [Leptothrix cholodnii SP-6] Length = 255 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 184/242 (76%), Positives = 213/242 (88%) Query: 40 APWILLLAILGVWQFICSVWQVSDFIFPSPASILQAMVDYAGPITEHALSTFWVTMVGFA 99 +PWILL+ L VWQ +C+ ++VS FIFPSPA I A+V+++ + HA TFWVTM GF Sbjct: 10 SPWILLVFTLLVWQMLCTGFKVSAFIFPSPADIAAALVEHSALVAGHAWRTFWVTMAGFG 69 Query: 100 IAVAVGVTLGFVIGSSPVLYAAAYPLMTAFNALPKAAFVPVLVVWFGIGAGPAILTAFLI 159 +++ VGV LGF+IGSS V Y A YPLMTAFNALPKAAFVP+LVVWFGIGAGPAILTAFLI Sbjct: 70 LSIVVGVLLGFLIGSSRVAYTAVYPLMTAFNALPKAAFVPILVVWFGIGAGPAILTAFLI 129 Query: 160 SFFPIMVNIATGLATLEPELEDVLRVLGARRMDILLKVGLPRSMPYFFASLKVAITLAFV 219 SFFPIMVNIATGLATLEPELEDVLRVLGARR D+L+KVGLPRS+PYF+ SLKVAITLAFV Sbjct: 130 SFFPIMVNIATGLATLEPELEDVLRVLGARRWDVLMKVGLPRSLPYFYGSLKVAITLAFV 189 Query: 220 GSTVSEMNASNQGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAMYELFAIIEKRTTGWAH 279 G+TVSEM A+N+GIGYLL+SAGSSM+M LAFAGLVV+GAMAM MYE F+++EKRTTGWAH Sbjct: 190 GTTVSEMTAANEGIGYLLISAGSSMQMGLAFAGLVVVGAMAMLMYEFFSVVEKRTTGWAH 249 Query: 280 RG 281 RG Sbjct: 250 RG 251