BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5377.p (274 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08275151.1| hypothetical protein IMCC9480_2 [Oxalobactera... 335 6e-90 ref|YP_003262746.1| hypothetical protein Hneap_0854 [Halothiobac... 313 1e-83 ref|YP_003262762.1| hypothetical protein Hneap_0870 [Halothiobac... 313 2e-83 ref|YP_001019999.1| hypothetical protein Mpe_A0802 [Methylibium ... 309 2e-82 ref|NP_862535.1| hypothetical protein pADP-1_p098 [Pseudomonas s... 307 9e-82 >ref|ZP_08275151.1| hypothetical protein IMCC9480_2 [Oxalobacteraceae bacterium IMCC9480] gb|EGF31379.1| hypothetical protein IMCC9480_2 [Oxalobacteraceae bacterium IMCC9480] Length = 283 Score = 335 bits (858), Expect = 6e-90, Method: Composition-based stats. Identities = 165/255 (64%), Positives = 203/255 (79%), Gaps = 9/255 (3%) Query: 29 DWSDNSIGYRYGTKFAEPFNSQDISKNIINFQHASGYKYGTNFLNVDLLMSDSKD----- 83 DWSD +GYRYGT+FAEP+N +DISKNI + HASGYKYGTNFLNVD+L+SDSKD Sbjct: 29 DWSDTYLGYRYGTQFAEPYNQKDISKNIFSLTHASGYKYGTNFLNVDVLLSDSKDPAKTS 88 Query: 84 --DNAQEAYIVYRNTLDIGKISGKDLSFGPARGVGLTLGFDWNTKNDKSYASKKRMWVVG 141 AQE YIVYR+TLDIGKI+G ++FGP RGVG+T GFD NTKND Y SKKRM V+G Sbjct: 89 TSSGAQEIYIVYRHTLDIGKITGSPIAFGPVRGVGITGGFDVNTKNDAGYGSKKRMLVLG 148 Query: 142 PTLMLDVPGFLNVSVLALFESNQPIGVSSRYSYDTHPMLNLSWGIPLGSTGL--AFEGYM 199 PTLM+DVPGFLN+SVL L ESNQP ++ RY+Y HPML+ +WGIPL + + +FEGY Sbjct: 149 PTLMMDVPGFLNLSVLMLRESNQPYFINERYTYKLHPMLSAAWGIPLPVSAVPTSFEGYA 208 Query: 200 NYIASKGKNEFGGPTAPELNFDGQIMYDLGTTMGMGKNTFRVGLEYQYWRNKFGNPSNVA 259 N+IA+KGK+E G T+PE N D Q+M+D+G+ GMGKNTFR+G+EYQYW+NKFG +++A Sbjct: 209 NFIAAKGKDEVGMGTSPETNVDMQVMFDVGSLSGMGKNTFRLGVEYQYWKNKFGGSASIA 268 Query: 260 GSLAKTPMVRAEYHF 274 G+ A TPMVR EYHF Sbjct: 269 GTKASTPMVRLEYHF 283 >ref|YP_003262746.1| hypothetical protein Hneap_0854 [Halothiobacillus neapolitanus c2] gb|ACX95699.1| conserved hypothetical protein [Halothiobacillus neapolitanus c2] Length = 314 Score = 313 bits (803), Expect = 1e-83, Method: Composition-based stats. Identities = 163/276 (59%), Positives = 194/276 (70%), Gaps = 15/276 (5%) Query: 14 AVVASAAGSMSAQAADWSDNSIGYRYGTKFAEPFNSQDISKNIINFQHASGYKYGTNFLN 73 +V S + +AQAADWSD S+ +RYGTKFAEP+ DISKNI+NF H SG+KYGTNF + Sbjct: 39 GLVLSISLGTAAQAADWSDTSLSWRYGTKFAEPYEGNDISKNILNFSHVSGFKYGTNFFS 98 Query: 74 VDLLMSDSKD-------DNAQEAYIVYRNTLDIGKISGKDLSFGPARGVGLTLGFDWNTK 126 +D L SDSKD AQE Y VYRNTLDIGKI KDL G A+G G+T GFD+NTK Sbjct: 99 IDALFSDSKDPSGPDGKSGAQEVYAVYRNTLDIGKIMNKDLKVGVAKGFGITSGFDFNTK 158 Query: 127 NDKSYASKKRMWVVGPTLMLDVPGFLNVSVLALFESNQPIG-----VSSRYSYDTHPMLN 181 D Y SKKRM V+GPT+M DVPGFLNVS+LAL+ESN P SRYSY HPML Sbjct: 159 TDAGYNSKKRMLVLGPTVMFDVPGFLNVSLLALWESNAPCNDYTNTCVSRYSYKVHPMLT 218 Query: 182 LSWGIPLGSTGLAFEGYMNYIASKGKNEFGGPTAPELNFDGQIMYDLGTTMGMGKNTFRV 241 +WGIP+G++ +FEGY N IA KGK+EFG T E+N D QIM D+G TF+ Sbjct: 219 AAWGIPIGNSAFSFEGYANLIAPKGKDEFGAQTKTEINIDAQIMADVGKLFWDKPGTFKA 278 Query: 242 GLEYQYWRNKFGNPSN---VAGSLAKTPMVRAEYHF 274 G+EYQYW+NKFGN +N +G+ AKTPMVR EYHF Sbjct: 279 GIEYQYWKNKFGNDANGPAGSGAFAKTPMVRVEYHF 314 >ref|YP_003262762.1| hypothetical protein Hneap_0870 [Halothiobacillus neapolitanus c2] gb|ACX95715.1| conserved hypothetical protein [Halothiobacillus neapolitanus c2] Length = 304 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 164/277 (59%), Positives = 195/277 (70%), Gaps = 15/277 (5%) Query: 13 AAVVASAAGSMSAQAADWSDNSIGYRYGTKFAEPFNSQDISKNIINFQHASGYKYGTNFL 72 +A+ S A +AQAADWSD S+ +RYGTKFAEP+ DISKNI+NF H SG+KYGTNF Sbjct: 28 SALALSMALGTAAQAADWSDTSLSWRYGTKFAEPYEGNDISKNILNFSHVSGFKYGTNFF 87 Query: 73 NVDLLMSDSKD-------DNAQEAYIVYRNTLDIGKISGKDLSFGPARGVGLTLGFDWNT 125 ++D L SDSKD AQE Y VYRNTLDIGKI KDL G A+G G+T GFD+NT Sbjct: 88 SIDALFSDSKDPSGPDGKSGAQEVYAVYRNTLDIGKIMNKDLKVGVAKGFGITSGFDFNT 147 Query: 126 KNDKSYASKKRMWVVGPTLMLDVPGFLNVSVLALFESNQPIG-----VSSRYSYDTHPML 180 K D Y SKKRM V+GPT+M DVPGFLNVS+LAL+ESN P SRYSY HPML Sbjct: 148 KTDAGYNSKKRMLVLGPTVMFDVPGFLNVSLLALWESNAPCNDYTNTCVSRYSYKVHPML 207 Query: 181 NLSWGIPLGSTGLAFEGYMNYIASKGKNEFGGPTAPELNFDGQIMYDLGTTMGMGKNTFR 240 +WGIP+G++ +FEGY N IA KGK+EFG T E+N D QIM D+G TF+ Sbjct: 208 TAAWGIPIGNSAFSFEGYANLIAPKGKDEFGAQTKTEINIDAQIMADVGKLFWDKPGTFK 267 Query: 241 VGLEYQYWRNKFGNPSN---VAGSLAKTPMVRAEYHF 274 G+EYQYW+NKFGN +N +G+ AKTPMVR EYHF Sbjct: 268 AGIEYQYWKNKFGNDANGPAGSGAFAKTPMVRVEYHF 304 >ref|YP_001019999.1| hypothetical protein Mpe_A0802 [Methylibium petroleiphilum PM1] gb|ABM93764.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 286 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 159/271 (58%), Positives = 187/271 (69%), Gaps = 19/271 (7%) Query: 22 SMSAQAADWSDNSIGYRYGTKFAEPFNSQ------DISKNIINFQHASGYKYGTNFLNVD 75 S ++ AADWSD +I RYGT+FAEPFN+ DI+K I+ H SGYKYG NF N D Sbjct: 17 SCTSFAADWSDTAISVRYGTQFAEPFNNNPDGSRNDITKTIVGLTHVSGYKYGVNFFNAD 76 Query: 76 LLMSDSKD--------DNAQEAYIVYRNTLDIGKISGKDLSFGPARGVGLTLGFDWNTKN 127 LL+SD D AQE YIVYR+ LD GK+ KDL GP RG G T GFDWNTKN Sbjct: 77 LLLSDRNDPGDGTPGASGAQEVYIVYRHLLDFGKVMSKDLKVGPVRGFGFTAGFDWNTKN 136 Query: 128 DKSYASKKRMWVVGPTLMLDVPGFLNVSVLALFESNQPIGVSSRYSYDTHPMLNLSWGIP 187 D YASKKRM+V GPT+M DVPGF N+S+LA ESN P G+S RY+YDTHP L WGIP Sbjct: 137 D-GYASKKRMFVFGPTVMFDVPGFANLSLLAFKESNSPKGISDRYTYDTHPALAAEWGIP 195 Query: 188 LGSTGLAFEGYMNYIASKGKNEFGGPTAPELNFDGQIMYDLGTTMGMGKNTFRVGLEYQY 247 +GS LAFEGY YI KG NEFGGPT PE + D ++M D+G G K TF+VGL Y+Y Sbjct: 196 IGSLPLAFEGYALYIGDKGTNEFGGPTKPETHIDMKLMLDVGVLAGAPKGTFKVGLAYEY 255 Query: 248 WRNKFGNPSNVA----GSLAKTPMVRAEYHF 274 W+NKFGNP+ G+ A+TPM+RAEYHF Sbjct: 256 WKNKFGNPTETPGAGDGATARTPMIRAEYHF 286 >ref|NP_862535.1| hypothetical protein pADP-1_p098 [Pseudomonas sp. ADP] gb|AAK50329.1|U66917_98 hypothetical protein [Pseudomonas sp. ADP] Length = 352 Score = 307 bits (787), Expect = 9e-82, Method: Composition-based stats. Identities = 152/258 (58%), Positives = 187/258 (72%), Gaps = 15/258 (5%) Query: 32 DNSIGYRYGTKFAEPFNSQDISKNIINFQHASGYKYGTNFLNVDLLMSDSKDDNA----- 86 D ++ YRYGTKFAEP+ DISK +INF + SGYKYG NF ++D L+SD KD +A Sbjct: 95 DTALSYRYGTKFAEPYIDADISKQVINFSNVSGYKYGKNFFSIDFLLSDDKDPSAVGAHG 154 Query: 87 --QEAYIVYRNTLDIGKISGKDLSFGPARGVGLTLGFDWNTKNDKSYASKKRMWVVGPTL 144 EAY VYRNT+D+G ++G L FGP R G+T+GFD N+K D Y SKKRM V GPTL Sbjct: 155 GAHEAYAVYRNTVDLGAVTGAKLGFGPVRSYGVTVGFDMNSKTDAGYNSKKRMLVAGPTL 214 Query: 145 MLDVPGFLNVSVLALFESNQPIG-----VSSRYSYDTHPMLNLSWGIP--LGSTGLAFEG 197 M DVPGFL++S+LAL ESN P + RY+Y TH ML+ +WGIP LGS L+FEG Sbjct: 215 MFDVPGFLDLSLLALRESNAPFNGFTQTSTDRYTYKTHAMLSAAWGIPFSLGSIPLSFEG 274 Query: 198 YMNYIASKGKNEFGGPTAPELNFDGQIMYDLGTTMGMGKNTFRVGLEYQYWRNKFGNPSN 257 Y +YI +KG+NEFGGPTA E+N D QIMYDL +G KNT ++G EYQYW+NKFGNPS+ Sbjct: 275 YADYIGTKGRNEFGGPTAVEINVDMQIMYDLSPAIGAAKNTLKLGAEYQYWKNKFGNPSD 334 Query: 258 -VAGSLAKTPMVRAEYHF 274 V G+ A+TPMVR EYHF Sbjct: 335 TVPGATARTPMVRLEYHF 352