BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5375.p (310 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777635.1| xylanase/chitin deacetylase [Herbaspirillum ... 620 e-176 ref|YP_002981890.1| urate catabolism protein [Ralstonia picketti... 547 e-154 ref|YP_001899826.1| urate catabolism protein [Ralstonia picketti... 545 e-153 ref|YP_002008832.1| hypothetical protein RALTA_B2203 [Cupriavidu... 541 e-152 ref|YP_002005022.1| polysaccharide deacetylase; xylanase/chitin ... 540 e-152 >ref|YP_003777635.1| xylanase/chitin deacetylase [Herbaspirillum seropedicae SmR1] gb|ADJ65727.1| xylanase/chitin deacetylase protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 620 bits (1600), Expect = e-176, Method: Composition-based stats. Identities = 295/310 (95%), Positives = 304/310 (98%) Query: 1 MSQQSTYPRDLAGYGRNPPHARWPGQARVALQFVLNYEEGGENCVLHGDPASEQFLSEIV 60 MSQQ +YPRDLAGYGRNPPHARWPGQARVALQFVLNYEEGGENCVLHGD ASEQFLSEIV Sbjct: 1 MSQQQSYPRDLAGYGRNPPHARWPGQARVALQFVLNYEEGGENCVLHGDAASEQFLSEIV 60 Query: 61 GAAAYPARHMSMESIYEYGSRVGVWRILREFEKRGLPMTIFGVATALQRSPEVTQAFQEL 120 GAAAYPARHMSMESIYEYGSRVGVWRILREFEKRGLP+T+FGVA ALQRSPEVTQAF EL Sbjct: 61 GAAAYPARHMSMESIYEYGSRVGVWRILREFEKRGLPLTVFGVAMALQRSPEVTQAFVEL 120 Query: 121 GHEIACHGLKWIHYQNMDIETERAHMKEAVQIFRELTGSAPLGWYTGRDSPNTRQLVVEH 180 GHEIACHGL+WIHYQ+MDIETERAHM+EAVQIFRELTGSAPLGWYTGRDSPNTRQLVVEH Sbjct: 121 GHEIACHGLRWIHYQSMDIETERAHMREAVQIFRELTGSAPLGWYTGRDSPNTRQLVVEH 180 Query: 181 GGFAYDSDYYGDDLPFWTEVETSGGVKAPHLVVPYTLDSNDMRFATPQGFNTSEHFYQYL 240 GGF YDSDYYGDDLPFWTEVET+ GVKAPHLVVPYTLDSNDMRFATPQGFNTSEHF+QYL Sbjct: 181 GGFVYDSDYYGDDLPFWTEVETAAGVKAPHLVVPYTLDSNDMRFATPQGFNTSEHFFQYL 240 Query: 241 KDSFDVLYEEGEDAPKMLSIGMHCRLLGRPGRFRALQRFLDYVQSHDKVWICRRIDIAEH 300 KDSFDVLYEEGE+APKMLSIGMHCRLLGRPGRFRALQRFLDYVQSHDKVWICRRIDIAEH Sbjct: 241 KDSFDVLYEEGEEAPKMLSIGMHCRLLGRPGRFRALQRFLDYVQSHDKVWICRRIDIAEH 300 Query: 301 WRKVHPYSER 310 WRKVHPYSER Sbjct: 301 WRKVHPYSER 310 >ref|YP_002981890.1| urate catabolism protein [Ralstonia pickettii 12D] gb|ACS63218.1| urate catabolism protein [Ralstonia pickettii 12D] Length = 320 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 254/310 (81%), Positives = 281/310 (90%), Gaps = 4/310 (1%) Query: 5 STYPRDLAGYGRNPPHARWPGQARVALQFVLNYEEGGENCVLHGDPASEQFLSEIVGAAA 64 + YPRDL GYG+NPP+A WPG ARVALQFVLNYEEGGENCVLHGD ASEQFLSEI+GAAA Sbjct: 4 NNYPRDLIGYGKNPPNANWPGGARVALQFVLNYEEGGENCVLHGDAASEQFLSEIIGAAA 63 Query: 65 YPARHMSMESIYEYGSRVGVWRILREFEKRGLPMTIFGVATALQRSPEVTQAFQELGHEI 124 YPARHMSME IYEYGSR GVWRILREFEKRGLP+T+FGV+ ALQR P+VTQAF +LGHEI Sbjct: 64 YPARHMSMEGIYEYGSRAGVWRILREFEKRGLPLTVFGVSMALQRHPDVTQAFVDLGHEI 123 Query: 125 ACHGLKWIHYQNMDIETERAHMKEAVQIFRELTGSAPLGWYTGRDSPNTRQLVVEHGGFA 184 ACHG +WIHYQN+D TER HM+ V+I RELTG+APLGWYTGRDSPNTR+LVVEHGGFA Sbjct: 124 ACHGWRWIHYQNIDEATEREHMRIGVEIIRELTGNAPLGWYTGRDSPNTRRLVVEHGGFA 183 Query: 185 YDSDYYGDDLPFWTEVETSGGVKAPHLVVPYTLDSNDMRFATPQGFNTSEHFYQYLKDSF 244 YD+DYYGDDLPFWTEVETS G PHLVVPYTLD+NDMRFA+PQGFNT++HFYQYLKD+F Sbjct: 184 YDADYYGDDLPFWTEVETSSGEHKPHLVVPYTLDTNDMRFASPQGFNTADHFYQYLKDAF 243 Query: 245 DVLYEEGED----APKMLSIGMHCRLLGRPGRFRALQRFLDYVQSHDKVWICRRIDIAEH 300 DVLYEEG+ PKMLSIGMHCRLLGRPGRFRALQRFLDYVQSHDKVWICRRIDIA+H Sbjct: 244 DVLYEEGDPNGLAQPKMLSIGMHCRLLGRPGRFRALQRFLDYVQSHDKVWICRRIDIAQH 303 Query: 301 WRKVHPYSER 310 W + HPY+++ Sbjct: 304 WIQNHPYAKQ 313 >ref|YP_001899826.1| urate catabolism protein [Ralstonia pickettii 12J] ref|ZP_07676540.1| urate catabolism protein [Ralstonia sp. 5_7_47FAA] gb|ACD27394.1| urate catabolism protein [Ralstonia pickettii 12J] gb|EFP65112.1| urate catabolism protein [Ralstonia sp. 5_7_47FAA] Length = 320 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 253/310 (81%), Positives = 279/310 (90%), Gaps = 4/310 (1%) Query: 5 STYPRDLAGYGRNPPHARWPGQARVALQFVLNYEEGGENCVLHGDPASEQFLSEIVGAAA 64 + YPRDL GYG+NPP+A WPG ARVALQFVLNYEEGGENCVLHGD SEQFLSEI+GAAA Sbjct: 4 NNYPRDLIGYGKNPPNANWPGGARVALQFVLNYEEGGENCVLHGDAGSEQFLSEIIGAAA 63 Query: 65 YPARHMSMESIYEYGSRVGVWRILREFEKRGLPMTIFGVATALQRSPEVTQAFQELGHEI 124 YPARHMSME IYEYGSR GVWRILREFEKRGLP+TIFGV+ ALQR P+VTQAF +LGHEI Sbjct: 64 YPARHMSMEGIYEYGSRAGVWRILREFEKRGLPLTIFGVSMALQRHPDVTQAFVDLGHEI 123 Query: 125 ACHGLKWIHYQNMDIETERAHMKEAVQIFRELTGSAPLGWYTGRDSPNTRQLVVEHGGFA 184 ACHG +WIHYQN+D TER HM+ V+I RELTG+APLGWYTGRDSPNTR+LVVEHGGFA Sbjct: 124 ACHGWRWIHYQNIDEATEREHMRIGVEIIRELTGNAPLGWYTGRDSPNTRRLVVEHGGFA 183 Query: 185 YDSDYYGDDLPFWTEVETSGGVKAPHLVVPYTLDSNDMRFATPQGFNTSEHFYQYLKDSF 244 YD+DYYGDDLPFWTEVETS G PHLVVPYTLD+NDMRFA+PQGFNT++HFYQYLKD+F Sbjct: 184 YDADYYGDDLPFWTEVETSSGEHKPHLVVPYTLDTNDMRFASPQGFNTADHFYQYLKDAF 243 Query: 245 DVLYEEGED----APKMLSIGMHCRLLGRPGRFRALQRFLDYVQSHDKVWICRRIDIAEH 300 DVLYEEG+ PKMLSIGMHCRLLGRP RFRALQRFLDYVQSHDKVWICRRIDIA+H Sbjct: 244 DVLYEEGDPNGLAQPKMLSIGMHCRLLGRPARFRALQRFLDYVQSHDKVWICRRIDIAQH 303 Query: 301 WRKVHPYSER 310 W + HPY+++ Sbjct: 304 WIQNHPYAKQ 313 >ref|YP_002008832.1| hypothetical protein RALTA_B2203 [Cupriavidus taiwanensis LMG 19424] emb|CAQ72780.1| conserved hypothetical protein [Cupriavidus taiwanensis LMG 19424] Length = 329 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 254/308 (82%), Positives = 273/308 (88%), Gaps = 4/308 (1%) Query: 4 QSTYPRDLAGYGRNPPHARWPGQARVALQFVLNYEEGGENCVLHGDPASEQFLSEIVGAA 63 QS YPRDL GYG PPHARWPG ARVALQFVLNYEEGGENCVLHGD ASEQFLSEIVGAA Sbjct: 3 QSRYPRDLIGYGARPPHARWPGGARVALQFVLNYEEGGENCVLHGDAASEQFLSEIVGAA 62 Query: 64 AYPARHMSMESIYEYGSRVGVWRILREFEKRGLPMTIFGVATALQRSPEVTQAFQELGHE 123 AYP RHMSME IYEYGSR GVWRILREFEKRGLP+TIFGV+ ALQR PE+T+AF ELGHE Sbjct: 63 AYPDRHMSMEGIYEYGSRAGVWRILREFEKRGLPLTIFGVSMALQRHPELTRAFVELGHE 122 Query: 124 IACHGLKWIHYQNMDIETERAHMKEAVQIFRELTGSAPLGWYTGRDSPNTRQLVVEHGGF 183 IACHG +WIHYQN+D TER HM+ +QI ++LTG PLGWYTGRDSPNTR+LVVEHGGF Sbjct: 123 IACHGWRWIHYQNIDEATEREHMRIGMQIIKDLTGELPLGWYTGRDSPNTRRLVVEHGGF 182 Query: 184 AYDSDYYGDDLPFWTEVETSGGVKAPHLVVPYTLDSNDMRFATPQGFNTSEHFYQYLKDS 243 YDSDYYGDDLPFWTEVE +GG K PHLVVPYTLDSNDMRFATPQGFNT E F+QYLKD+ Sbjct: 183 LYDSDYYGDDLPFWTEVEVTGGEKKPHLVVPYTLDSNDMRFATPQGFNTGEQFFQYLKDA 242 Query: 244 FDVLYEE----GEDAPKMLSIGMHCRLLGRPGRFRALQRFLDYVQSHDKVWICRRIDIAE 299 FDVLYEE G+D+PKMLS+GMHCRLLGRPGRFRALQRFLDYVQ HDKVWICRR+DIA Sbjct: 243 FDVLYEEGDPSGQDSPKMLSVGMHCRLLGRPGRFRALQRFLDYVQGHDKVWICRRVDIAR 302 Query: 300 HWRKVHPY 307 HW VHP+ Sbjct: 303 HWAHVHPF 310 >ref|YP_002005022.1| polysaccharide deacetylase; xylanase/chitin deacetylase [Cupriavidus taiwanensis LMG 19424] emb|CAQ68955.1| putative Polysaccharide deacetylase; xylanase/chitin deacetylase [Cupriavidus taiwanensis LMG 19424] Length = 316 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 254/308 (82%), Positives = 272/308 (88%), Gaps = 4/308 (1%) Query: 7 YPRDLAGYGRNPPHARWPGQARVALQFVLNYEEGGENCVLHGDPASEQFLSEIVGAAAYP 66 YPRDL GYG PPHARWPG ARVALQFVLNYEEGGENCVLHGD ASEQFLSEIVGAAAYP Sbjct: 6 YPRDLIGYGARPPHARWPGGARVALQFVLNYEEGGENCVLHGDAASEQFLSEIVGAAAYP 65 Query: 67 ARHMSMESIYEYGSRVGVWRILREFEKRGLPMTIFGVATALQRSPEVTQAFQELGHEIAC 126 RHMSME IYEYGSR GVWRILREFEKRGLP+TIFGV+ ALQR PE+T+AF ELGHEIAC Sbjct: 66 DRHMSMEGIYEYGSRAGVWRILREFEKRGLPLTIFGVSMALQRHPELTRAFVELGHEIAC 125 Query: 127 HGLKWIHYQNMDIETERAHMKEAVQIFRELTGSAPLGWYTGRDSPNTRQLVVEHGGFAYD 186 HG +WIHYQN+D TER HM+ +QI ++LTG PLGWYTGRDSPNTR+LVVEHGGF YD Sbjct: 126 HGWRWIHYQNIDEATEREHMRIGMQIIKDLTGELPLGWYTGRDSPNTRRLVVEHGGFLYD 185 Query: 187 SDYYGDDLPFWTEVETSGGVKAPHLVVPYTLDSNDMRFATPQGFNTSEHFYQYLKDSFDV 246 SDYYGDDLPFWTEVE +GG K PHLVVPYTLDSNDMRFATPQGFNT E F+QYLKD+FDV Sbjct: 186 SDYYGDDLPFWTEVEVTGGEKKPHLVVPYTLDSNDMRFATPQGFNTGEQFFQYLKDAFDV 245 Query: 247 LYEE----GEDAPKMLSIGMHCRLLGRPGRFRALQRFLDYVQSHDKVWICRRIDIAEHWR 302 LYEE G+D+PKMLSIGMHCRLLGRPGRFRALQRFLDYVQ HDKVWICRR+DIA HW Sbjct: 246 LYEEGDPSGQDSPKMLSIGMHCRLLGRPGRFRALQRFLDYVQGHDKVWICRRVDIARHWA 305 Query: 303 KVHPYSER 310 HPY+ R Sbjct: 306 ATHPYTPR 313