BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5373.p (483 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777633.1| cytosine/purine/uracil/thiamine/allantoin pe... 854 0.0 ref|YP_001857530.1| cytosine/purines uracil, thiamine, allantoin... 671 0.0 ref|YP_001579490.1| cytosine/purines uracil, thiamine, allantoin... 666 0.0 ref|ZP_03571316.1| permease, cytosine/purine, uracil, thiamine, ... 666 0.0 ref|YP_559093.1| NCS1 family nucleobase/cation symporter [Burkho... 665 0.0 >ref|YP_003777633.1| cytosine/purine/uracil/thiamine/allantoin permease family protein [Herbaspirillum seropedicae SmR1] gb|ADJ65725.1| cytosine/purine/uracil/thiamine/allantoin permease family protein [Herbaspirillum seropedicae SmR1] Length = 481 Score = 854 bits (2206), Expect = 0.0, Method: Composition-based stats. Identities = 466/482 (96%), Positives = 478/482 (99%), Gaps = 2/482 (0%) Query: 1 MTTDASPSAAPGAYIAGADDARLTNEDLAPLKKQTWGSYNIFAFWMSDVHSVGGYVFAGS 60 MTTD+SP+A+ +Y+AGADDARLTNEDLAPLKKQTWGSYNIFAFWMSDVHSVGGYVFAGS Sbjct: 1 MTTDSSPAAS--SYLAGADDARLTNEDLAPLKKQTWGSYNIFAFWMSDVHSVGGYVFAGS 58 Query: 61 LFALGLTSWQVLISLLIGISIVYLLCNLVARPSQAHGVPYPVMSRLSFGVLGANVPAMIR 120 LFALGLTSWQVLISLLIGISIVYLLCNLVARPSQAHGVPYPVMSRLSFGVLGANVPAMIR Sbjct: 59 LFALGLTSWQVLISLLIGISIVYLLCNLVARPSQAHGVPYPVMSRLSFGVLGANVPAMIR 118 Query: 121 GLIAVAWYGIQTYLASAAFVVVVLKFFPELKPYADVHVHSFAGLSTLGWGGFLLLWVLQA 180 GLIAVAWYGIQTYLASAAFVVVVLKFFPELKPYADVHVHSFAGLS LGWGGFLLLWVLQA Sbjct: 119 GLIAVAWYGIQTYLASAAFVVVVLKFFPELKPYADVHVHSFAGLSALGWGGFLLLWVLQA 178 Query: 181 LVFWNGMDTIKKFIDFAGPAVYVVMFILAGWMIYKAGWQNVGLNLGEIKYSGWAAVSVMI 240 LVFWNGM+TIKKFIDFAGPAVYVVMFILAGWMIYKAGWQNVGLNLGEIKYSGWAAVSVMI Sbjct: 179 LVFWNGMETIKKFIDFAGPAVYVVMFILAGWMIYKAGWQNVGLNLGEIKYSGWAAVSVMI 238 Query: 241 TAISLVVSYFSGPMLNFGDFSRYCHTFADVKRGNFWGLPVNFLAFSIVTVVTTSATIAVF 300 TAISLVVSYFSGPMLNFGDFSRYCHTFADVKRGNFWGLPVNFLAFSIVTVVTTSATIAVF Sbjct: 239 TAISLVVSYFSGPMLNFGDFSRYCHTFADVKRGNFWGLPVNFLAFSIVTVVTTSATIAVF 298 Query: 301 GELITDPVETVSRIDSTTAAVIGALTFLTATIGINIVANFVSAAFDFSNLSPSRISWRAG 360 GELITDPVETVSRIDSTTAAVIGALTFLTATIGINIVANFVSAAFDFSNLSPSRISWRAG Sbjct: 299 GELITDPVETVSRIDSTTAAVIGALTFLTATIGINIVANFVSAAFDFSNLSPSRISWRAG 358 Query: 361 GMIAATASIFITPWNLFGNPEVIHYTLDVLGGFIGPLYGILLSDYYLVKQRQVKVEDLYT 420 GM+AATASIFITPWNLFGNPEVIHYTLDVLGGFIGPLYGILL+DYYL+K+R+VKVEDLYT Sbjct: 359 GMMAATASIFITPWNLFGNPEVIHYTLDVLGGFIGPLYGILLADYYLIKRREVKVEDLYT 418 Query: 421 MRPEGRYWYTNGVNRDAVKALVLAAAVCVACVMLPQLRKAADFSWFIGAALGAVFYLMFA 480 MRPEGRYWYTNGVNRDAVKALVLAAAVCVACVMLPQLR AADFSWFIGAALGA+FYLMFA Sbjct: 419 MRPEGRYWYTNGVNRDAVKALVLAAAVCVACVMLPQLRAAADFSWFIGAALGALFYLMFA 478 Query: 481 RK 482 RK Sbjct: 479 RK 480 >ref|YP_001857530.1| cytosine/purines uracil, thiamine, allantoin permease [Burkholderia phymatum STM815] gb|ACC70484.1| permease for cytosine/purines uracil thiamine allantoin [Burkholderia phymatum STM815] Length = 498 Score = 671 bits (1732), Expect = 0.0, Method: Composition-based stats. Identities = 356/478 (74%), Positives = 405/478 (84%) Query: 4 DASPSAAPGAYIAGADDARLTNEDLAPLKKQTWGSYNIFAFWMSDVHSVGGYVFAGSLFA 63 D A G + RL NEDLAPLK QTWG+YNIFAFWMSDVHSVGGYVFAGSLFA Sbjct: 15 DYESGAQGGHALPAGYSERLYNEDLAPLKHQTWGAYNIFAFWMSDVHSVGGYVFAGSLFA 74 Query: 64 LGLTSWQVLISLLIGISIVYLLCNLVARPSQAHGVPYPVMSRLSFGVLGANVPAMIRGLI 123 LGLTSWQVLI+LL+GI+IV +LCN++A+PSQ +GVPYPV R +FGVLGANVPA+IRGLI Sbjct: 75 LGLTSWQVLIALLVGITIVNVLCNMIAKPSQQNGVPYPVACRATFGVLGANVPAVIRGLI 134 Query: 124 AVAWYGIQTYLASAAFVVVVLKFFPELKPYADVHVHSFAGLSTLGWGGFLLLWVLQALVF 183 AVAWYGIQTYLAS+A V+VVLKF P+L PYADVH H F GLS +GW GF+LLWVLQALVF Sbjct: 135 AVAWYGIQTYLASSALVIVVLKFLPQLLPYADVHHHGFMGLSAIGWAGFMLLWVLQALVF 194 Query: 184 WNGMDTIKKFIDFAGPAVYVVMFILAGWMIYKAGWQNVGLNLGEIKYSGWAAVSVMITAI 243 WNGM+TIKKFIDFAGPAVYVVMFILAG+MI++AGWQN+G+NLG +KY G + VMITAI Sbjct: 195 WNGMETIKKFIDFAGPAVYVVMFILAGYMIWRAGWQNIGINLGGVKYHGMEVIPVMITAI 254 Query: 244 SLVVSYFSGPMLNFGDFSRYCHTFADVKRGNFWGLPVNFLAFSIVTVVTTSATIAVFGEL 303 SLVVSYFSGPMLNFGDFSRY +F VKRGNFWGLPVNFLAFS+VTVVTT+AT+ VFGEL Sbjct: 255 SLVVSYFSGPMLNFGDFSRYGKSFRSVKRGNFWGLPVNFLAFSLVTVVTTAATLPVFGEL 314 Query: 304 ITDPVETVSRIDSTTAAVIGALTFLTATIGINIVANFVSAAFDFSNLSPSRISWRAGGMI 363 ITDPVETV RID TA ++GALTF ATIGINIVANFVS AFDFSN++P ISWRAGGM+ Sbjct: 315 ITDPVETVGRIDYPTAVILGALTFTIATIGINIVANFVSPAFDFSNVAPKLISWRAGGML 374 Query: 364 AATASIFITPWNLFGNPEVIHYTLDVLGGFIGPLYGILLSDYYLVKQRQVKVEDLYTMRP 423 AA ASIFITPWNLF NP VIHYTLDVLG FIGPLYGIL+ DY+LVK++++ ++DLYT+ Sbjct: 375 AAVASIFITPWNLFNNPAVIHYTLDVLGSFIGPLYGILIVDYFLVKRQKIVLDDLYTVSE 434 Query: 424 EGRYWYTNGVNRDAVKALVLAAAVCVACVMLPQLRKAADFSWFIGAALGAVFYLMFAR 481 +G+YWY NGVN AV AL+ AA + V CVM+P L A+FSWFIGA LGAVFY AR Sbjct: 435 KGKYWYHNGVNYRAVAALLPAAVIAVICVMVPSLNALANFSWFIGAGLGAVFYGGLAR 492 >ref|YP_001579490.1| cytosine/purines uracil, thiamine, allantoin permease [Burkholderia multivorans ATCC 17616] ref|YP_001946395.1| NCS1 family nucleobase:cation symporter-1 [Burkholderia multivorans ATCC 17616] ref|ZP_03588472.1| permease, cytosine/purine, uracil, thiamine, allantoin family [Burkholderia multivorans CGD1] gb|ABX14993.1| permease for cytosine/purines uracil thiamine allantoin [Burkholderia multivorans ATCC 17616] dbj|BAG43859.1| NCS1 family nucleobase:cation symporter-1 [Burkholderia multivorans ATCC 17616] gb|EED97174.1| permease, cytosine/purine, uracil, thiamine, allantoin family [Burkholderia multivorans CGD1] Length = 494 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 349/469 (74%), Positives = 403/469 (85%) Query: 12 GAYIAGADDARLTNEDLAPLKKQTWGSYNIFAFWMSDVHSVGGYVFAGSLFALGLTSWQV 71 G + G RL NEDLAPLK QTWGSYNIFAFWMSDVHSVGGYVFAGSLFALGLTSWQV Sbjct: 22 GPALPGGYSERLYNEDLAPLKNQTWGSYNIFAFWMSDVHSVGGYVFAGSLFALGLTSWQV 81 Query: 72 LISLLIGISIVYLLCNLVARPSQAHGVPYPVMSRLSFGVLGANVPAMIRGLIAVAWYGIQ 131 LI+L++GIS+V +LCNL+ARPSQ GVPYPV R +FGVLGANVPA+IRGLIA+AWYGIQ Sbjct: 82 LIALIVGISLVNVLCNLIARPSQQIGVPYPVACRATFGVLGANVPAVIRGLIAIAWYGIQ 141 Query: 132 TYLASAAFVVVVLKFFPELKPYADVHVHSFAGLSTLGWGGFLLLWVLQALVFWNGMDTIK 191 TYLAS+A V+VVLKFFP+ PYADVH + F GLS +GW GF+LLWVLQALVFWNGM+TIK Sbjct: 142 TYLASSALVIVVLKFFPQWLPYADVHRYGFLGLSAVGWAGFMLLWVLQALVFWNGMETIK 201 Query: 192 KFIDFAGPAVYVVMFILAGWMIYKAGWQNVGLNLGEIKYSGWAAVSVMITAISLVVSYFS 251 KFIDFAGPAVYVVMFILAG+M+++AGW+N+G+NLG +KY G + VMITAISLVVSYFS Sbjct: 202 KFIDFAGPAVYVVMFILAGYMVWRAGWRNIGINLGGVKYHGAEVIPVMITAISLVVSYFS 261 Query: 252 GPMLNFGDFSRYCHTFADVKRGNFWGLPVNFLAFSIVTVVTTSATIAVFGELITDPVETV 311 GPMLNFGDFSRYC +F +VKRGNFWGLPVNFLAFS+VTV+TT+AT+ VFGELITDPVETV Sbjct: 262 GPMLNFGDFSRYCRSFGEVKRGNFWGLPVNFLAFSLVTVITTAATLPVFGELITDPVETV 321 Query: 312 SRIDSTTAAVIGALTFLTATIGINIVANFVSAAFDFSNLSPSRISWRAGGMIAATASIFI 371 RID TA ++GALTF ATIGINIVANFVS AFDFSN++P ISWRAGGM+AA AS+FI Sbjct: 322 GRIDHPTAVILGALTFTIATIGINIVANFVSPAFDFSNVAPRLISWRAGGMLAAVASVFI 381 Query: 372 TPWNLFGNPEVIHYTLDVLGGFIGPLYGILLSDYYLVKQRQVKVEDLYTMRPEGRYWYTN 431 TPWNLF NP VIHYTLDVLG FIGPLYG+L++D+YLVK+ ++ +DLYTM G YWYT Sbjct: 382 TPWNLFNNPAVIHYTLDVLGAFIGPLYGVLIADFYLVKRGRLVRDDLYTMSESGTYWYTG 441 Query: 432 GVNRDAVKALVLAAAVCVACVMLPQLRKAADFSWFIGAALGAVFYLMFA 480 GVNR A+ AL+ AA + + CVM+P + A+FSWFIGAALG VFY + A Sbjct: 442 GVNRRALAALLPAAVIAIVCVMMPGWQGVANFSWFIGAALGFVFYRVLA 490 >ref|ZP_03571316.1| permease, cytosine/purine, uracil, thiamine, allantoin family [Burkholderia multivorans CGD2M] ref|ZP_03581213.1| permease, cytosine/purine, uracil, thiamine, allantoin family [Burkholderia multivorans CGD2] gb|EEE04300.1| permease, cytosine/purine, uracil, thiamine, allantoin family [Burkholderia multivorans CGD2] gb|EEE14603.1| permease, cytosine/purine, uracil, thiamine, allantoin family [Burkholderia multivorans CGD2M] Length = 494 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 349/469 (74%), Positives = 403/469 (85%) Query: 12 GAYIAGADDARLTNEDLAPLKKQTWGSYNIFAFWMSDVHSVGGYVFAGSLFALGLTSWQV 71 G + G RL NEDLAPLK QTWGSYNIFAFWMSDVHSVGGYVFAGSLFALGLTSWQV Sbjct: 22 GPALPGGYSERLYNEDLAPLKNQTWGSYNIFAFWMSDVHSVGGYVFAGSLFALGLTSWQV 81 Query: 72 LISLLIGISIVYLLCNLVARPSQAHGVPYPVMSRLSFGVLGANVPAMIRGLIAVAWYGIQ 131 LI+L++GIS+V +LCNL+ARPSQ GVPYPV R +FGVLGANVPA+IRGLIA+AWYGIQ Sbjct: 82 LIALIVGISLVNVLCNLIARPSQQIGVPYPVACRATFGVLGANVPAVIRGLIAIAWYGIQ 141 Query: 132 TYLASAAFVVVVLKFFPELKPYADVHVHSFAGLSTLGWGGFLLLWVLQALVFWNGMDTIK 191 TYLAS+A V+VVLKFFP+ PYADVH + F GLS +GW GF+LLWVLQALVFWNGM+TIK Sbjct: 142 TYLASSALVIVVLKFFPQWLPYADVHRYGFLGLSAVGWAGFMLLWVLQALVFWNGMETIK 201 Query: 192 KFIDFAGPAVYVVMFILAGWMIYKAGWQNVGLNLGEIKYSGWAAVSVMITAISLVVSYFS 251 KFIDFAGPAVYVVMFILAG+M+++AGW+N+G+NLG +KY G + VMITAISLVVSYFS Sbjct: 202 KFIDFAGPAVYVVMFILAGYMVWRAGWRNIGINLGGVKYHGAEVIPVMITAISLVVSYFS 261 Query: 252 GPMLNFGDFSRYCHTFADVKRGNFWGLPVNFLAFSIVTVVTTSATIAVFGELITDPVETV 311 GPMLNFGDFSRYC +F +VKRGNFWGLPVNFLAFS+VTV+TT+AT+ VFGELITDPVETV Sbjct: 262 GPMLNFGDFSRYCRSFGEVKRGNFWGLPVNFLAFSLVTVITTAATLPVFGELITDPVETV 321 Query: 312 SRIDSTTAAVIGALTFLTATIGINIVANFVSAAFDFSNLSPSRISWRAGGMIAATASIFI 371 RID TA ++GALTF ATIGINIVANFVS AFDFSN++P ISWRAGGM+AA AS+FI Sbjct: 322 GRIDHPTAVILGALTFTIATIGINIVANFVSPAFDFSNVAPRLISWRAGGMLAAVASVFI 381 Query: 372 TPWNLFGNPEVIHYTLDVLGGFIGPLYGILLSDYYLVKQRQVKVEDLYTMRPEGRYWYTN 431 TPWNLF NP VIHYTLDVLG FIGPLYG+L++D+YLVK+ ++ +DLYTM G YWYT Sbjct: 382 TPWNLFNNPAVIHYTLDVLGAFIGPLYGVLIADFYLVKRGRLVRDDLYTMSESGTYWYTG 441 Query: 432 GVNRDAVKALVLAAAVCVACVMLPQLRKAADFSWFIGAALGAVFYLMFA 480 GVNR A+ AL+ AA + + CVM+P + A+FSWFIGAALG VFY + A Sbjct: 442 GVNRRALAALLPAAVIAIVCVMMPGWQGVANFSWFIGAALGFVFYRVLA 490 >ref|YP_559093.1| NCS1 family nucleobase/cation symporter [Burkholderia xenovorans LB400] gb|ABE31041.1| Nucleobase/Cation Symporter, NCS1 family [Burkholderia xenovorans LB400] Length = 493 Score = 665 bits (1717), Expect = 0.0, Method: Composition-based stats. Identities = 351/460 (76%), Positives = 401/460 (87%) Query: 22 RLTNEDLAPLKKQTWGSYNIFAFWMSDVHSVGGYVFAGSLFALGLTSWQVLISLLIGISI 81 RL NEDLAPL+ QTWG+YNIFAFWMSDVHSVGGYVFAGSLFALGLTSWQVLI+LL+GI+I Sbjct: 34 RLYNEDLAPLRHQTWGAYNIFAFWMSDVHSVGGYVFAGSLFALGLTSWQVLIALLVGITI 93 Query: 82 VYLLCNLVARPSQAHGVPYPVMSRLSFGVLGANVPAMIRGLIAVAWYGIQTYLASAAFVV 141 V LLCNL+A+PSQA+GVPYPV R +FGVLGAN+PA+IRGLIAVAWYGIQTYLAS+A V+ Sbjct: 94 VNLLCNLIAKPSQANGVPYPVACRATFGVLGANIPAVIRGLIAVAWYGIQTYLASSALVI 153 Query: 142 VVLKFFPELKPYADVHVHSFAGLSTLGWGGFLLLWVLQALVFWNGMDTIKKFIDFAGPAV 201 VVLKF P+L PYADVH H F GLSTLGW GF+LLWVLQALVFW+GM+TIKKFIDFAGPAV Sbjct: 154 VVLKFVPQLLPYADVHHHGFMGLSTLGWAGFMLLWVLQALVFWHGMETIKKFIDFAGPAV 213 Query: 202 YVVMFILAGWMIYKAGWQNVGLNLGEIKYSGWAAVSVMITAISLVVSYFSGPMLNFGDFS 261 YVVMFILAG+M+Y+AGW+N+G+NLG +KY G V VMITA SLVVSYFSGPMLNFGDFS Sbjct: 214 YVVMFILAGYMVYRAGWRNIGINLGGVKYHGMQVVPVMITATSLVVSYFSGPMLNFGDFS 273 Query: 262 RYCHTFADVKRGNFWGLPVNFLAFSIVTVVTTSATIAVFGELITDPVETVSRIDSTTAAV 321 RY +F V+RGNFWGLPVNFLAFS+VTV+TT+AT+ VFGELITDPVETV RID TA + Sbjct: 274 RYGKSFRSVQRGNFWGLPVNFLAFSLVTVITTAATLPVFGELITDPVETVGRIDYPTAVI 333 Query: 322 IGALTFLTATIGINIVANFVSAAFDFSNLSPSRISWRAGGMIAATASIFITPWNLFGNPE 381 +GALTF ATIGINIVANFVS AFDFSN++P ISWRAGGM+AA ASIFITPWNLF NP Sbjct: 334 LGALTFTIATIGINIVANFVSPAFDFSNVAPRLISWRAGGMLAAVASIFITPWNLFNNPA 393 Query: 382 VIHYTLDVLGGFIGPLYGILLSDYYLVKQRQVKVEDLYTMRPEGRYWYTNGVNRDAVKAL 441 VIHYTLDVLG FIGPLYG+L+ DYYLVK++++ ++DLYT+ P G YWY NGVN AV AL Sbjct: 394 VIHYTLDVLGSFIGPLYGVLIVDYYLVKRQRIVLDDLYTVAPTGSYWYRNGVNYRAVAAL 453 Query: 442 VLAAAVCVACVMLPQLRKAADFSWFIGAALGAVFYLMFAR 481 + AA + V CVM+P L A+FSWFIGA L A+FY + AR Sbjct: 454 LPAAVIAVICVMVPSLDGMANFSWFIGAGLAALFYRVIAR 493