BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5372.p (267 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777632.1| transcription regulator protein [Herbaspiril... 417 e-115 gb|AEG68620.1| conserved hypothetical protein [Ralstonia solanac... 290 1e-76 ref|YP_002005024.1| GntR family transcriptional regulator [Cupri... 286 2e-75 ref|YP_004684789.1| GntR family transcriptional regulator [Cupri... 286 2e-75 ref|NP_520238.1| transcription regulator protein [Ralstonia sola... 286 3e-75 >ref|YP_003777632.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65724.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 417 bits (1073), Expect = e-115, Method: Composition-based stats. Identities = 228/246 (92%), Positives = 236/246 (95%), Gaps = 1/246 (0%) Query: 22 MNKASKTARPPAAPARASARERESTGAVEERMYQDIYDAIMEHRLPPRTKLTEQTLCQIY 81 MNKASK +RP A PARA ARER++ AVEERMYQDIYDAIMEHRLPPRTKLTEQTLCQIY Sbjct: 1 MNKASKASRP-ATPARAPARERDNAVAVEERMYQDIYDAIMEHRLPPRTKLTEQTLCQIY 59 Query: 82 DTARHTVRKVLSRLASEGMVDLEANRGAFIASPSHAEVRDMFELRNILEHAVLEKVGREA 141 DTARHTVRKVL+RLA+EGMVDLEANRGAFIASPS AEVRDMFELRNILEHAVLEK+G A Sbjct: 60 DTARHTVRKVLARLAAEGMVDLEANRGAFIASPSPAEVRDMFELRNILEHAVLEKLGHTA 119 Query: 142 GTRQIAGLRRMVEEERDCYLNGDRPRWIRLSAQFHLALAELTGNALLVETLRKLVSRTTL 201 GTRQIAGLRRMVEEERDCYLNGDRPRWIRLSAQFHLALAELTGNALLVETLRKLVSRTTL Sbjct: 120 GTRQIAGLRRMVEEERDCYLNGDRPRWIRLSAQFHLALAELTGNALLVETLRKLVSRTTL 179 Query: 202 MIAKTEAPGHNACSFDEHETVLEALEKGDVAAAQSHMAHHLHLCEDRVRPDADDQFDLRA 261 MIAKTEAPGHNACSFDEHETVLEALEKGD+ AAQ+HMAHHLHLCEDRVRPDADDQFDLRA Sbjct: 180 MIAKTEAPGHNACSFDEHETVLEALEKGDIKAAQAHMAHHLHLCEDRVRPDADDQFDLRA 239 Query: 262 VLGKGL 267 VLGKGL Sbjct: 240 VLGKGL 245 >gb|AEG68620.1| conserved hypothetical protein [Ralstonia solanacearum Po82] Length = 272 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 162/253 (64%), Positives = 191/253 (75%), Gaps = 4/253 (1%) Query: 15 SSQSMSIMNKASKTARPPAAPARASARERESTGAVEERMYQDIYDAIMEHRLPPRTKLTE 74 S +MS K T + A+AS R S VEERMY++IYDAIMEHRLPPRTKLTE Sbjct: 17 SGSAMSKSLKLVTTETASKSGAKASGTTRMS---VEERMYREIYDAIMEHRLPPRTKLTE 73 Query: 75 QTLCQIYDTARHTVRKVLSRLASEGMVDLEANRGAFIASPSHAEVRDMFELRNILEHAVL 134 LC+IY TARHTVRKV S+LA++G+VDLE NRGAFIA+PS E MFELR ILE AVL Sbjct: 74 HALCEIYATARHTVRKVFSQLAADGLVDLEPNRGAFIAAPSIDEAHAMFELRQILERAVL 133 Query: 135 EKVGREAGTRQ-IAGLRRMVEEERDCYLNGDRPRWIRLSAQFHLALAELTGNALLVETLR 193 +KVGR A + IA L+ +V+EER ++ DRPRWIRLSA+FH+ALAE GN L+VE +R Sbjct: 134 DKVGRSADPKTAIAPLQELVKEERQAFVGHDRPRWIRLSAEFHVALAEQAGNPLVVEIMR 193 Query: 194 KLVSRTTLMIAKTEAPGHNACSFDEHETVLEALEKGDVAAAQSHMAHHLHLCEDRVRPDA 253 +LVSRTTLMIA EAPGHNACSFDEH +L ALE+GD AAQ+HMA HL C DRVRP+A Sbjct: 194 RLVSRTTLMIASVEAPGHNACSFDEHLDILRALERGDAGAAQAHMAQHLQCCADRVRPEA 253 Query: 254 DDQFDLRAVLGKG 266 FDLR+VLG+G Sbjct: 254 PADFDLRSVLGRG 266 >ref|YP_002005024.1| GntR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] emb|CAQ68957.1| putative TRANSCRIPTIONal REGULATOR, GntR family [Cupriavidus taiwanensis LMG 19424] Length = 255 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 159/235 (67%), Positives = 184/235 (78%), Gaps = 9/235 (3%) Query: 32 PAAPARASARERESTGAVEERMYQDIYDAIMEHRLPPRTKLTEQTLCQIYDTARHTVRKV 91 PA PAR G+VEERMY +IYDAIMEHRLPPRTKLTE +LC+IY TARHTVRKV Sbjct: 27 PAKPAR--------KGSVEERMYHEIYDAIMEHRLPPRTKLTEHSLCEIYATARHTVRKV 78 Query: 92 LSRLASEGMVDLEANRGAFIASPSHAEVRDMFELRNILEHAVLEKVGREAGTRQ-IAGLR 150 LS LA++GMVDLE NRGAFIASPS E DMFELR +LE AVLEK+ + IA LR Sbjct: 79 LSHLAADGMVDLEPNRGAFIASPSTDEAHDMFELRQMLERAVLEKLAAMPDVKAVIAPLR 138 Query: 151 RMVEEERDCYLNGDRPRWIRLSAQFHLALAELTGNALLVETLRKLVSRTTLMIAKTEAPG 210 +MV +ER +L DRP+WIRLSA+FH ALAEL+GNALLV +R+LVSRTTLMIA EAPG Sbjct: 139 QMVADERQAFLTHDRPKWIRLSAEFHTALAELSGNALLVNMMRRLVSRTTLMIASVEAPG 198 Query: 211 HNACSFDEHETVLEALEKGDVAAAQSHMAHHLHLCEDRVRPDADDQFDLRAVLGK 265 +NACSFDEHE +L+ALE+G+ A AQS MAHHL C DRV+PD FDLR+VLG+ Sbjct: 199 NNACSFDEHEDILDALEQGNAALAQSRMAHHLGACADRVQPDEPGSFDLRSVLGR 253 >ref|YP_004684789.1| GntR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI76308.1| transcriptional regulator GntR family [Cupriavidus necator N-1] Length = 256 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 160/238 (67%), Positives = 184/238 (77%), Gaps = 9/238 (3%) Query: 29 ARPPAAPARASARERESTGAVEERMYQDIYDAIMEHRLPPRTKLTEQTLCQIYDTARHTV 88 A PA PAR G+VEERMY +IYDAIMEHRLPPRTKLTE +LC+IY TARHTV Sbjct: 25 AGKPAKPAR--------KGSVEERMYHEIYDAIMEHRLPPRTKLTEHSLCEIYATARHTV 76 Query: 89 RKVLSRLASEGMVDLEANRGAFIASPSHAEVRDMFELRNILEHAVLEKVGREAGTRQ-IA 147 RKVLS LA++GMVDLE NRGAFIASPS E DMFELR +LE AVLEK+ + IA Sbjct: 77 RKVLSHLAADGMVDLEPNRGAFIASPSTDEAHDMFELRQMLERAVLEKLAGMPDVKTVIA 136 Query: 148 GLRRMVEEERDCYLNGDRPRWIRLSAQFHLALAELTGNALLVETLRKLVSRTTLMIAKTE 207 LR+MV ER +L DRP+WIRLSA+FH ALAEL+GNALLV +R+LVSRTTLMIA E Sbjct: 137 PLRQMVASERQAFLTHDRPKWIRLSAEFHTALAELSGNALLVNMMRRLVSRTTLMIASVE 196 Query: 208 APGHNACSFDEHETVLEALEKGDVAAAQSHMAHHLHLCEDRVRPDADDQFDLRAVLGK 265 APG+NACSFDEHE +L+ALE+G+ A AQS MAHHL C DRV+PD FDLR+VLG+ Sbjct: 197 APGNNACSFDEHEEILDALEQGNAALAQSRMAHHLGACADRVQPDEPGNFDLRSVLGR 254 >ref|NP_520238.1| transcription regulator protein [Ralstonia solanacearum GMI1000] emb|CAD15824.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 250 Score = 286 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 159/246 (64%), Positives = 185/246 (75%), Gaps = 1/246 (0%) Query: 22 MNKASKTARPPAAPARASARERESTGAVEERMYQDIYDAIMEHRLPPRTKLTEQTLCQIY 81 M+K+ K AA + + VEERMY +IYDAIMEHRLPPRTKLTE LC+IY Sbjct: 1 MSKSLKLVSTDAASKSGAKASGTTRMPVEERMYHEIYDAIMEHRLPPRTKLTEHALCEIY 60 Query: 82 DTARHTVRKVLSRLASEGMVDLEANRGAFIASPSHAEVRDMFELRNILEHAVLEKVGREA 141 TARHTVRKV SRLA++G+VDLE NRGAFIA+PS E MFELR ILE AVL+KVGR A Sbjct: 61 ATARHTVRKVFSRLAADGLVDLEPNRGAFIAAPSIDEAHAMFELRQILERAVLDKVGRSA 120 Query: 142 GTRQ-IAGLRRMVEEERDCYLNGDRPRWIRLSAQFHLALAELTGNALLVETLRKLVSRTT 200 + +A L V EER +++ DRPRWIRLSA+FH+ALAE GN L+VE +R+LVSRTT Sbjct: 121 SPKAAVAPLLARVNEERQAFVSHDRPRWIRLSAEFHVALAEQAGNPLVVEIMRRLVSRTT 180 Query: 201 LMIAKTEAPGHNACSFDEHETVLEALEKGDVAAAQSHMAHHLHLCEDRVRPDADDQFDLR 260 LMIA EAPGHNACSFDEH +L ALE+GDV AAQ+HMA HL C DRVRP+A FDLR Sbjct: 181 LMIASVEAPGHNACSFDEHLDILRALERGDVGAAQAHMAQHLQCCADRVRPEAPADFDLR 240 Query: 261 AVLGKG 266 AVLG+G Sbjct: 241 AVLGRG 246