BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5370.p         (181 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777630.1| hypothetical protein Hsero_4253 [Herbaspiril...   315   3e-84
ref|YP_002540973.1| hypothetical protein Arad_8000 [Agrobacteriu...   156   1e-36

>ref|YP_003777630.1| hypothetical protein Hsero_4253 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65722.1| hypothetical protein Hsero_4253 [Herbaspirillum seropedicae SmR1]
          Length = 181

 Score =  315 bits (806), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 148/181 (81%), Positives = 168/181 (92%)

Query: 1   MRKSIRESMQWIVGGTVLVAMSGCSMMPWTEAEDPTVVPYKTVLSGSYQGFLKNWDEQRQ 60
           MRK+IR SMQW++    +V+  GCSMMPW+E EDPTV+P+KTVLSGSYQGF+KNWD+QRQ
Sbjct: 1   MRKTIRVSMQWMLAAATMVSAGGCSMMPWSEQEDPTVIPFKTVLSGSYQGFVKNWDDQRQ 60

Query: 61  PVFCALIRSRAEWDRWMQPAPVMNDKRPFGPSADHFERKQYLVVARSMTAPDAAERPHVF 120
           PVFC LIRSRAEWD WMQPAP M D+RP GPS+DHFERKQYL+VAR+MTAPDAAERPHVF
Sbjct: 61  PVFCTLIRSRAEWDEWMQPAPTMGDRRPTGPSSDHFERKQYLLVARTMTAPDAAERPHVF 120

Query: 121 TPLSLRLRDGTLRLNYLYRAPASGASYRIKDYLMVAIPKERFTTGPVVFYENDRKVCEVD 180
           TPLS+RLRDGTLRLNYLYRAPASGASYRIKDYLMV+IPK+R+TTGPVVFYENDRKVCE++
Sbjct: 121 TPLSVRLRDGTLRLNYLYRAPASGASYRIKDYLMVSIPKDRYTTGPVVFYENDRKVCEIN 180

Query: 181 R 181
           R
Sbjct: 181 R 181


>ref|YP_002540973.1| hypothetical protein Arad_8000 [Agrobacterium radiobacter K84]
 gb|ACM29377.1| hypothetical protein Arad_8000 [Agrobacterium radiobacter K84]
          Length = 183

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/157 (47%), Positives = 104/157 (66%), Gaps = 5/157 (3%)

Query: 28  PWTEAED-----PTVVPYKTVLSGSYQGFLKNWDEQRQPVFCALIRSRAEWDRWMQPAPV 82
           P   AED      + VP+  V + +YQ F+KNWDE++QPV C  IRS +EW++   PA  
Sbjct: 21  PGQAAEDHAQASRSTVPFTVVRNSAYQSFVKNWDEKKQPVLCGSIRSASEWEKIFNPAAT 80

Query: 83  MNDKRPFGPSADHFERKQYLVVARSMTAPDAAERPHVFTPLSLRLRDGTLRLNYLYRAPA 142
           M +K+PF P+A  + RKQ LVVAR ++A   AE+  +FT  ++ +++G L+LNY YRAP 
Sbjct: 81  MQNKKPFSPAASFYARKQLLVVARVVSARSEAEQGKIFTATAVSVKNGALQLNYDYRAPQ 140

Query: 143 SGASYRIKDYLMVAIPKERFTTGPVVFYENDRKVCEV 179
            G SY+IKDYL+V+IPK     GPV F EN + VC++
Sbjct: 141 PGGSYQIKDYLLVSIPKNAHPAGPVTFIENGKVVCDL 177