BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5367.p (223 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777628.1| amino acid ABC transporter permease [Herbasp... 374 e-102 gb|EGP46368.1| amino acid ABC transporter permease [Achromobacte... 288 4e-76 ref|ZP_06685208.1| glutamine ABC superfamily ATP binding cassett... 287 1e-75 gb|EFV82368.1| polar amino acid ABC transporter [Achromobacter x... 286 2e-75 ref|YP_004752056.1| amino acid ABC transporter permease [Collimo... 284 6e-75 >ref|YP_003777628.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65720.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 223 Score = 374 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 213/223 (95%), Positives = 220/223 (98%) Query: 1 MAYQFDFLSTLDYTDVIVKGVATTAELIAIGGVLGVAVGIFGAWARTQGPGWLKPIVSGY 60 MAYQFDFLST DYTDVIVKGVATT ELIAIGGVLGVAVGIFGAWARTQGPGWLKP+VSGY Sbjct: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLNIHISEITAAILAMVINLGAYSTEIIRAGVQAIPRGQ 120 VEIIRNTPFLVQLFFIFFGLPSL+IHISEITAAI+AMVINLGAYSTEIIRAGVQAIPRGQ Sbjct: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 Query: 121 IEAAQSLSMSRGQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANYI 180 IEAAQSLSMSR QIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAAN+I Sbjct: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 Query: 181 QGRNFRAFEAYIVATAIYLVLAILLRQLLRLIGNHFITARRTA 223 QGRNFRAFEAYIVATAIYLVLAILLRQ+LRLIG++FITARRTA Sbjct: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYFITARRTA 223 >gb|EGP46368.1| amino acid ABC transporter permease [Achromobacter xylosoxidans AXX-A] Length = 222 Score = 288 bits (737), Expect = 4e-76, Method: Composition-based stats. Identities = 149/213 (69%), Positives = 176/213 (82%) Query: 1 MAYQFDFLSTLDYTDVIVKGVATTAELIAIGGVLGVAVGIFGAWARTQGPGWLKPIVSGY 60 MAYQFDF S DYT V+VKG+ T ELIA G V+GVA+GI AWARTQGP WL+ V+ Y Sbjct: 1 MAYQFDFASVFDYTPVLVKGIGVTVELIAFGAVVGVALGIGCAWARTQGPRWLRAPVTAY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLNIHISEITAAILAMVINLGAYSTEIIRAGVQAIPRGQ 120 VE++RNTPFL+QLFF+FFGLPSL + +E+ AA LAM +NLGAYS EIIRAG+ A PRGQ Sbjct: 61 VEVVRNTPFLIQLFFVFFGLPSLGVQFNEMQAACLAMALNLGAYSAEIIRAGIDATPRGQ 120 Query: 121 IEAAQSLSMSRGQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANYI 180 EA SL+M+R Q+FRHI+L+PAL +IWPALSSQ+VIVMLGSAVCSQIA E+L+FAAN+I Sbjct: 121 YEAGASLAMTRWQVFRHIVLKPALARIWPALSSQIVIVMLGSAVCSQIAAEDLTFAANFI 180 Query: 181 QGRNFRAFEAYIVATAIYLVLAILLRQLLRLIG 213 Q RNFRAFE Y V T IYL LA+LLRQLLR+ G Sbjct: 181 QSRNFRAFEVYFVTTGIYLALAVLLRQLLRMTG 213 >ref|ZP_06685208.1| glutamine ABC superfamily ATP binding cassette transporter, membrane protein [Achromobacter piechaudii ATCC 43553] gb|EFF77825.1| glutamine ABC superfamily ATP binding cassette transporter, membrane protein [Achromobacter piechaudii ATCC 43553] Length = 222 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 148/213 (69%), Positives = 179/213 (84%) Query: 1 MAYQFDFLSTLDYTDVIVKGVATTAELIAIGGVLGVAVGIFGAWARTQGPGWLKPIVSGY 60 MAYQ+DF S LDYT V++KG+ T ELIA G V GVA+GI AW RTQGP WL+ V+ Y Sbjct: 1 MAYQYDFASVLDYTPVLIKGIGVTVELIAFGAVAGVALGIVCAWVRTQGPRWLRVPVTAY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLNIHISEITAAILAMVINLGAYSTEIIRAGVQAIPRGQ 120 VE+IRNTPFL+QLFF+FFGLPSL + + E+ AA LAM +NLGAYSTEIIRAG+ A P+GQ Sbjct: 61 VEVIRNTPFLIQLFFVFFGLPSLGVQLGEMQAACLAMALNLGAYSTEIIRAGIDATPKGQ 120 Query: 121 IEAAQSLSMSRGQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANYI 180 EA SL+M+R Q+FRH++L+PAL++IWPALSSQ+VIVMLGSAVCSQIA E+L+FAAN+I Sbjct: 121 YEAGASLAMTRLQVFRHVVLKPALKRIWPALSSQIVIVMLGSAVCSQIAAEDLTFAANFI 180 Query: 181 QGRNFRAFEAYIVATAIYLVLAILLRQLLRLIG 213 Q RNFRAFE Y+V T IYLVLAI+LRQLLR+ G Sbjct: 181 QSRNFRAFEVYLVTTGIYLVLAIVLRQLLRMAG 213 >gb|EFV82368.1| polar amino acid ABC transporter [Achromobacter xylosoxidans C54] Length = 222 Score = 286 bits (731), Expect = 2e-75, Method: Composition-based stats. Identities = 148/213 (69%), Positives = 176/213 (82%) Query: 1 MAYQFDFLSTLDYTDVIVKGVATTAELIAIGGVLGVAVGIFGAWARTQGPGWLKPIVSGY 60 MAYQFDF S DYT V++KG+ T ELIA G V GVA+GI AWARTQGP WL+ V+ Y Sbjct: 1 MAYQFDFASVFDYTPVLIKGIGVTVELIAFGAVAGVALGIACAWARTQGPRWLRAPVTAY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLNIHISEITAAILAMVINLGAYSTEIIRAGVQAIPRGQ 120 VE++RNTPFL+QLFF+FFGLPSL + SE+ AA LAM +NLGAYS EIIRAG+ A P+GQ Sbjct: 61 VEVVRNTPFLIQLFFVFFGLPSLGVQFSEMQAACLAMALNLGAYSAEIIRAGIDATPKGQ 120 Query: 121 IEAAQSLSMSRGQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANYI 180 EA SL+M+R Q+FRH++L+PAL +IWPALSSQ+VIVMLGSAVCSQIA E+L+FAAN+I Sbjct: 121 YEAGASLAMTRLQVFRHVVLKPALARIWPALSSQIVIVMLGSAVCSQIAAEDLTFAANFI 180 Query: 181 QGRNFRAFEAYIVATAIYLVLAILLRQLLRLIG 213 Q RNFRAFE Y V T IYLVLA+LLRQLLR+ G Sbjct: 181 QSRNFRAFEVYFVTTGIYLVLAVLLRQLLRMTG 213 >ref|YP_004752056.1| amino acid ABC transporter permease [Collimonas fungivorans Ter331] gb|AEK61233.1| Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine [Collimonas fungivorans Ter331] Length = 226 Score = 284 bits (727), Expect = 6e-75, Method: Composition-based stats. Identities = 163/216 (75%), Positives = 190/216 (87%) Query: 1 MAYQFDFLSTLDYTDVIVKGVATTAELIAIGGVLGVAVGIFGAWARTQGPGWLKPIVSGY 60 M+Y FDFL+ DY V+VKGV T ELIAIGGVLGVAVGIFGAWARTQGP WL+P+VS Y Sbjct: 1 MSYHFDFLAPFDYPAVLVKGVLVTIELIAIGGVLGVAVGIFGAWARTQGPRWLRPLVSAY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLNIHISEITAAILAMVINLGAYSTEIIRAGVQAIPRGQ 120 VE+IRNTPFL+QLFFIFFGLP + + I E+ AA+LAMVINLGAYS EIIRAG+ A+ RGQ Sbjct: 61 VELIRNTPFLIQLFFIFFGLPGIGVQIGEMQAALLAMVINLGAYSCEIIRAGIAAVARGQ 120 Query: 121 IEAAQSLSMSRGQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANYI 180 +EA SL+M+R QIFRH+IL PALQKIWPALSSQVVIVMLGSAVCSQIAVEEL++AAN+I Sbjct: 121 VEAGLSLAMTRMQIFRHVILPPALQKIWPALSSQVVIVMLGSAVCSQIAVEELAYAANFI 180 Query: 181 QGRNFRAFEAYIVATAIYLVLAILLRQLLRLIGNHF 216 QGRNFR+FE+Y+++TAIYL+LAI LRQLLRL G+ Sbjct: 181 QGRNFRSFESYLLSTAIYLLLAIGLRQLLRLAGDRL 216