BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5365.p (248 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777626.1| GntR family transcription regulator protein ... 370 e-100 ref|YP_001351727.1| GntR family transcriptional regulator [Janth... 294 6e-78 ref|YP_004752058.1| GntR family transcriptional regulator [Colli... 258 8e-67 emb|CBA32229.1| hypothetical protein Csp_D31090 [Curvibacter put... 248 7e-64 ref|YP_550278.1| GntR family transcriptional regulator [Polaromo... 246 2e-63 >ref|YP_003777626.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65718.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 220/248 (88%), Positives = 228/248 (91%) Query: 1 MNTDPSAKSSSQIAVRITEAILAKQLAPGTRLGEQQLADLFGVSRTQVREALTRLMARGI 60 M+T+PS KSSSQIAVRITEAILAKQLAPGTRLGEQQLADLF VSRTQVREALT LMARGI Sbjct: 1 MSTNPSLKSSSQIAVRITEAILAKQLAPGTRLGEQQLADLFKVSRTQVREALTHLMARGI 60 Query: 61 VTVSARRGWFVIEPTAEQAREAFEARRVIELGLLRQARVRPISAQAIGQLRDHIAREEAA 120 VTVSARRGWFVIEPT QAREAFEARRVIELGLLRQAR+RP+ AIGQLR+HIAREEAA Sbjct: 61 VTVSARRGWFVIEPTPAQAREAFEARRVIELGLLRQARLRPVGDTAIGQLREHIAREEAA 120 Query: 121 IAGADVGARSYLLGDFHVCLCECLGNSLLSETLRDLTARTTLTAMLHQSSEQAEDSCSEH 180 IAGADVGARSYLLGDFHVCL ECLGNSLL+ETLRDLTARTTLTAMLHQSSEQAEDSCSEH Sbjct: 121 IAGADVGARSYLLGDFHVCLAECLGNSLLAETLRDLTARTTLTAMLHQSSEQAEDSCSEH 180 Query: 181 VLIVEALERGDLERAEQLMQDHLQHVESGLTQVRSSDPLEPLRQALASVSRQGAAGETGL 240 VLIVEALERGDLE+AEQLM DHLQHVESGL QVRSSDPLEPLRQALASVSRQGAA + Sbjct: 181 VLIVEALERGDLEQAEQLMHDHLQHVESGLNQVRSSDPLEPLRQALASVSRQGAASDAKT 240 Query: 241 PRQESKRP 248 R K P Sbjct: 241 VRPPGKGP 248 >ref|YP_001351727.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR91180.1| transcriptional regulator, GntR family [Janthinobacterium sp. Marseille] Length = 284 Score = 294 bits (753), Expect = 6e-78, Method: Composition-based stats. Identities = 175/230 (76%), Positives = 194/230 (84%), Gaps = 2/230 (0%) Query: 1 MNTDPSAKSSSQIAVRITEAILAKQLAPGTRLGEQQLADLFGVSRTQVREALTRLMARGI 60 M ++ + KSS QIA RITE+ILAKQLAPGTRLGEQQLADLFGVSRT +REAL RL RGI Sbjct: 1 MTSEQTLKSSIQIAARITESILAKQLAPGTRLGEQQLADLFGVSRTLIREALMRLATRGI 60 Query: 61 VTVSARRGWFVIEPTAEQAREAFEARRVIELGLLRQARVRPISAQAIGQLRDHIAREEAA 120 V VSARRGWFVIEPTA +AREAFEARRVIELGLLR AR P+S AIGQLR+HIARE+AA Sbjct: 61 VMVSARRGWFVIEPTASEAREAFEARRVIELGLLRHAR--PLSKHAIGQLREHIAREQAA 118 Query: 121 IAGADVGARSYLLGDFHVCLCECLGNSLLSETLRDLTARTTLTAMLHQSSEQAEDSCSEH 180 IAG DVGARSYLLGDFHVCLCECLGN+LLS+TLRDLTARTTLTAML QSS QA DSC +H Sbjct: 119 IAGDDVGARSYLLGDFHVCLCECLGNNLLSDTLRDLTARTTLTAMLRQSSSQAVDSCEDH 178 Query: 181 VLIVEALERGDLERAEQLMQDHLQHVESGLTQVRSSDPLEPLRQALASVS 230 V IV ALE GD++ AE+LM +HLQ VES L ++ SDPL LR AL V+ Sbjct: 179 VHIVAALESGDIDEAERLMLEHLQVVESTLYELAPSDPLNALRTALTPVA 228 >ref|YP_004752058.1| GntR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK61235.1| Transcriptional regulator, GntR family [Collimonas fungivorans Ter331] Length = 240 Score = 258 bits (658), Expect = 8e-67, Method: Composition-based stats. Identities = 163/228 (71%), Positives = 188/228 (82%), Gaps = 2/228 (0%) Query: 6 SAKSSSQIAVRITEAILAKQLAPGTRLGEQQLADLFGVSRTQVREALTRLMARGIVTVSA 65 +AKSS+QIA RITEA+LA++LAPGTRLGEQQLA+LFGVSRTQ+REALTRL+ RGIVTVSA Sbjct: 4 AAKSSTQIAERITEAMLARKLAPGTRLGEQQLAELFGVSRTQIREALTRLVTRGIVTVSA 63 Query: 66 RRGWFVIEPTAEQAREAFEARRVIELGLLRQARVRPISAQAIGQLRDHIAREEAAIAGAD 125 RRGW+VIEPT E AR+AFEARRV+ELGLLR AR PI A AI +LR H+ RE+AA+ G D Sbjct: 64 RRGWYVIEPTPEDARDAFEARRVLELGLLRHAR--PIGADAIRKLRQHVEREQAALEGED 121 Query: 126 VGARSYLLGDFHVCLCECLGNSLLSETLRDLTARTTLTAMLHQSSEQAEDSCSEHVLIVE 185 V RS+LLGDFHVCLCE GN+LL++TLRDLT RTTLTAM +QSS A SC+EHV IV Sbjct: 122 VATRSFLLGDFHVCLCESFGNTLLADTLRDLTTRTTLTAMQYQSSHHARQSCAEHVGIVA 181 Query: 186 ALERGDLERAEQLMQDHLQHVESGLTQVRSSDPLEPLRQALASVSRQG 233 ALE GDLE AEQLM +HL +VE+GL Q SD L PLRQALA +S Sbjct: 182 ALEAGDLELAEQLMHNHLCNVEAGLDQSLRSDSLSPLRQALAPLSENA 229 >emb|CBA32229.1| hypothetical protein Csp_D31090 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 297 Score = 248 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 146/234 (62%), Positives = 173/234 (73%), Gaps = 3/234 (1%) Query: 3 TDPSAKSSSQIAVRITEAILAKQLAPGTRLGEQQLADLFGVSRTQVREALTRLMARGIVT 62 T + ++S I+ RI EAI+A++LAPG RLGEQQLA +F SRT VREALTRL ARGIVT Sbjct: 37 TGCTMANASDISSRIIEAIMAQKLAPGARLGEQQLAMVFDCSRTIVREALTRLAARGIVT 96 Query: 63 VSARRGWFVIEPTAEQAREAFEARRVIELGLLRQARVRPISAQAIGQLRDHIAREEAAIA 122 VS+RRGW+VIEP+ +AREAFEARRVIE+GL+R +S AI L+ HI E+AA+ Sbjct: 97 VSSRRGWYVIEPSLSEAREAFEARRVIEMGLIRCTT--EVSKAAIKTLKAHIKTEQAAVK 154 Query: 123 GADVGARSYLLGDFHVCLCECLGNSLLSETLRDLTARTTLTAMLHQSSEQAEDSCSEHVL 182 G DVG RSYLLGDFHVCL ECLGNSLL++TLRD TARTTL AML+QSS A SC+EH Sbjct: 155 GTDVGLRSYLLGDFHVCLAECLGNSLLADTLRDFTARTTLIAMLYQSSHDAAHSCAEHGR 214 Query: 183 IVEALERGDLERAEQLMQDHLQHVESGLT-QVRSSDPLEPLRQALASVSRQGAA 235 IVEALE+ D AEQLMQ H+ HV+ L Q + DPL LR AL+ VS A Sbjct: 215 IVEALEKSDWVLAEQLMQQHIGHVQDALRLQPAAEDPLAELRNALSPVSESSKA 268 >ref|YP_550278.1| GntR family transcriptional regulator [Polaromonas sp. JS666] gb|ABE45380.1| transcriptional regulator, GntR family [Polaromonas sp. JS666] Length = 259 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 149/244 (61%), Positives = 182/244 (74%), Gaps = 6/244 (2%) Query: 9 SSSQIAVRITEAILAKQLAPGTRLGEQQLADLFGVSRTQVREALTRLMARGIVTVSARRG 68 ++S I+ RI EA++A++LAPG RLGEQQLA LF SRT VREALT L ARGIVTVSARRG Sbjct: 3 TASHISNRIIEAVMAQKLAPGARLGEQQLAILFDCSRTIVREALTHLAARGIVTVSARRG 62 Query: 69 WFVIEPTAEQAREAFEARRVIELGLLRQARVRPISAQAIGQLRDHIAREEAAIAGADVGA 128 W++IEP+ E+AREAFEARRVIE+GL+R R +S AI QL+ H+ RE+AA+ G D+G Sbjct: 63 WYLIEPSREEAREAFEARRVIEMGLIRCTR--DVSKSAIKQLKSHLTREKAAVKGEDIGL 120 Query: 129 RSYLLGDFHVCLCECLGNSLLSETLRDLTARTTLTAMLHQSSEQAEDSCSEHVLIVEALE 188 RS+LLGDFHVCL ECLGN+LL++TLRD TARTTL AML+QSS A SC EHV IV+ALE Sbjct: 121 RSFLLGDFHVCLAECLGNNLLADTLRDFTARTTLIAMLYQSSHDAAQSCEEHVRIVQALE 180 Query: 189 RGDLERAEQLMQDHLQHVESGLT-QVRSSDPLEPLRQALASVSRQGAAGETGLP---RQE 244 +GDL AEQLMQ H+ V++GL Q DPL LR AL+ +S A L R+ Sbjct: 181 KGDLVLAEQLMQAHIGSVQAGLQLQAAGGDPLAHLRSALSPLSPAKARSAQELHTSVRKT 240 Query: 245 SKRP 248 +RP Sbjct: 241 GRRP 244