BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5360.p (591 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777622.1| transmembrane protein [Herbaspirillum serope... 769 0.0 ref|ZP_08273147.1| putative transmembrane protein [Oxalobacterac... 431 e-118 emb|CCA84621.1| putative polysaccharide transport system compone... 338 2e-90 ref|YP_586294.1| hypothetical protein Rmet_4158 [Cupriavidus met... 336 8e-90 ref|YP_003751810.1| polysaccharide transport system component tr... 334 3e-89 >ref|YP_003777622.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65714.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 491 Score = 770 bits (1987), Expect = 0.0, Method: Composition-based stats. Identities = 403/487 (82%), Positives = 434/487 (89%), Gaps = 1/487 (0%) Query: 106 PASGRPGGGQ-PWAASPRPAPTAAQKRQKFWARLFTRFDTDSGSPRKAALRIVETIALVA 164 P GR G Q PWAA A TA QKRQKFW+R FTRFDTDSGSPRKA LRI+ET+ALV Sbjct: 5 PRQGRGAGPQRPWAAGMSTALTAGQKRQKFWSRFFTRFDTDSGSPRKAVLRIIETVALVL 64 Query: 165 AALAVAWWLSPEDPFGLEAQFPWLWLMPAILAMRYGSTLGVVAVATMLGGWYLLMHGHHE 224 AAL A W++PEDP G+ AQFPWLWL+PAILAMRYGSTLGVVAVATM+ GWYLL+HGH Sbjct: 65 AALLFAHWVAPEDPMGIRAQFPWLWLVPAILAMRYGSTLGVVAVATMMAGWYLLVHGHQA 124 Query: 225 DEAQAVVSAAQAFPQAYFLGGLVLTLLCGQFAEVWNARSRRLRGVNAYLEERLTMLTKNH 284 EA AV +AAQAFPQ+YFLGGLVLTLLCGQFAEVWNARSRRLR +NAYL+ERLTMLTKNH Sbjct: 125 SEADAVAAAAQAFPQSYFLGGLVLTLLCGQFAEVWNARSRRLRAINAYLDERLTMLTKNH 184 Query: 285 FLLRLSHERLEQDLLSKPLTLRESLDRMRALTLTQYLLDPGRMPAPDAFLQILVQSCQVE 344 FLLRLSHERLEQDLLSKPLTLRESLDRMRALTLTQ LLDP RMPAPDAFLQIL QSCQV Sbjct: 185 FLLRLSHERLEQDLLSKPLTLRESLDRMRALTLTQILLDPSRMPAPDAFLQILAQSCQVA 244 Query: 345 SASVFACDVHGHVLPEAVASVGKVTPLAADDPLVRYCLTQQKLGHIQTESLNQTLRNQSR 404 SA+V+ CD GH+ PE ASVGKV+ LAADD LVRYCL Q+KLGHIQTESLNQ LRNQSR Sbjct: 245 SAAVYVCDAAGHITPEPAASVGKVSELAADDALVRYCLAQRKLGHIQTESLNQNLRNQSR 304 Query: 405 YLVCAPLRNYEGRQFGLLVVEQLPFLALNEDTLQLMSVLIDYYADGIEMGDSARAILQQL 464 YLVCAPL N++GR FGLLVVEQLPF+ALNEDTLQLMSVLIDYYADGIE+G +AR+ILQQL Sbjct: 305 YLVCAPLLNFDGRLFGLLVVEQLPFVALNEDTLQLMSVLIDYYADGIEVGGTARSILQQL 364 Query: 465 PTCPPELAVDLVRLHRLKRSTDIDSSLVALVFGDDELSRDMYDQVRRLKRAADVVWTYKA 524 PTCPPELAVD+VRLHRLKRSTDIDSSLVALVFGDDE+SRDM+DQ+RRLKRAADVVWTYKA Sbjct: 365 PTCPPELAVDVVRLHRLKRSTDIDSSLVALVFGDDEISRDMFDQIRRLKRAADVVWTYKA 424 Query: 525 GGRNVLMTLLPLAGPAAVDGYLMRIETASHAQFDNKSLANFAAAHTAALGSDEPMRLLIN 584 GGRNVLMTLLPLAG AAVDGYLMR+E AS AQF KSLAN+AA HTAA+G DEP RLL N Sbjct: 425 GGRNVLMTLLPLAGAAAVDGYLMRVEAASQAQFGAKSLANYAAIHTAAIGGDEPSRLLPN 484 Query: 585 LVERCAA 591 LVERCAA Sbjct: 485 LVERCAA 491 >ref|ZP_08273147.1| putative transmembrane protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF33374.1| putative transmembrane protein [Oxalobacteraceae bacterium IMCC9480] Length = 471 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 229/444 (51%), Positives = 298/444 (67%), Gaps = 6/444 (1%) Query: 153 ALRIVETIALVAAALAVAWWLSPEDPFGLEAQFPWLWLMPAILAMRYGSTLGVVAVATML 212 +L +E I L A A ++ W++P+DP GL AQFPWLW++PA+LAMRYG+ +GV AV T + Sbjct: 27 SLAALEAIFLCALAFGLSCWIAPQDPLGLGAQFPWLWIVPALLAMRYGTAIGVTAVVTFI 86 Query: 213 GGWYLL------MHGHHEDEAQAVVSAAQAFPQAYFLGGLVLTLLCGQFAEVWNARSRRL 266 LL + A A A Q FP+A+FLGGLVLTL+CGQF+++W+AR+RRL Sbjct: 87 ALCLLLPELAAYLPWSRSIVASATSLAGQEFPKAFFLGGLVLTLICGQFSDIWSARTRRL 146 Query: 267 RGVNAYLEERLTMLTKNHFLLRLSHERLEQDLLSKPLTLRESLDRMRALTLTQYLLDPGR 326 R VNAYL+ERL LTKNHFLLRLSHERLEQDLL+KPLTLRE+L R+R LT +Q DP Sbjct: 147 RAVNAYLDERLNTLTKNHFLLRLSHERLEQDLLAKPLTLRETLARLRELTASQQAADPVE 206 Query: 327 MPAPDAFLQILVQSCQVESASVFACDVHGHVLPEAVASVGKVTPLAADDPLVRYCLTQQK 386 +P F+Q+L QSCQ+E A++ A +G+ L DDPLVRYC+ Q + Sbjct: 207 LPGAREFIQLLGQSCQLEIAALHGVTGTDRYAGMPTAVLGEPGVLDQDDPLVRYCIAQGR 266 Query: 387 LGHIQTESLNQTLRNQSRYLVCAPLRNYEGRQFGLLVVEQLPFLALNEDTLQLMSVLIDY 446 L H+QT + R+ SRYL+CAPL GLLVVE+LPF ALN+D LQL+SVLI Y Sbjct: 267 LAHVQTTDITPADRSASRYLICAPLLPSGSAPVGLLVVEKLPFFALNDDALQLLSVLIGY 326 Query: 447 YADGIEMGDSARAILQQLPTCPPELAVDLVRLHRLKRSTDIDSSLVALVFGDDELSRDMY 506 YADG+ +G + RA+L +P CP ++A+DL+RL R++ I++SLVALVFG DE S D + Sbjct: 327 YADGVRLGHAVRAVLATVPDCPADMALDLMRLQRIRVEAGIETSLVALVFGKDEESLDRF 386 Query: 507 DQVRRLKRAADVVWTYKAGGRNVLMTLLPLAGPAAVDGYLMRIETASHAQFDNKSLANFA 566 +QV+RLKR D+ W L+TLLPLA AAVDGYL+RIE+A QF +++ Sbjct: 387 EQVKRLKRGVDLSWELAGNSHVALITLLPLASAAAVDGYLLRIESALQQQFGGGFVSSQI 446 Query: 567 AAHTAALGSDEPMRLLINLVERCA 590 HTA LG + L+ LV RCA Sbjct: 447 TTHTARLGHADAGETLLGLVRRCA 470 >emb|CCA84621.1| putative polysaccharide transport system component transmembrane protein (ragD) [Ralstonia syzygii R24] Length = 483 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 187/441 (42%), Positives = 258/441 (58%), Gaps = 23/441 (5%) Query: 156 IVETIALVAAALAVAWWLSPEDPFGLEAQFPWLWLMPAILAMRYGSTLGVVAVATMLGGW 215 I+ET+ ++ + W P++P L FPW+WL+P ILA+RYG+ LG VA M+G W Sbjct: 55 ILETLGATIVSIGIVWLFEPDNPLLLGHGFPWVWLVPLILALRYGTLLGAVAALVMVGAW 114 Query: 216 YLLMHGHHEDEAQAVVSAAQAFPQAYFLGGLVLTLLCGQFAEVWNARSRRLRGVNAYLEE 275 + V AFP+ YFLGGL++ L+ GQ+ ++W AR R R VN YL + Sbjct: 115 W-------------VFYGQGAFPRMYFLGGLMMMLVGGQYGDIWGARLSRARIVNGYLND 161 Query: 276 RLTMLTKNHFLLRLSHERLEQDLLSKPLTLRESLDRMRALTLTQY-------LLDPGRMP 328 RL LTKNHFLLRLSHERLE DLL+KP TLR++L ++R L L D ++P Sbjct: 162 RLAALTKNHFLLRLSHERLENDLLAKPTTLRDTLTQLRNLALAAREHASGDDAPDVAQLP 221 Query: 329 APDAFLQILVQSCQVESASVFACDVHGHVLPEAVASVGKVTPLAADDPLVRYCLTQQKLG 388 FLQ Q+CQ+E A++ + V P VA VG + ADDPL+R+C+ LG Sbjct: 222 GATQFLQWAAQACQLEVAAMVRV-IGNRVDPAPVARVGTPFEIVADDPLIRHCIDTHTLG 280 Query: 389 HIQTESLNQTLRNQSRYLVCAPLRNYEGRQFGLLVVEQLPFLALNEDTLQLMSVLIDYYA 448 H Q L + SRY+ CAP+ + G++VV+Q+PFL+L+ + LQ + VL+ YYA Sbjct: 281 HPQAPELRH--EDGSRYVACAPILSGADELIGIVVVQQMPFLSLSYENLQFLLVLLGYYA 338 Query: 449 DGIEMGDSARAILQQLPTCPPELAVDLVRLHRLKRSTDIDSSLVALVFGDDELSRDMYDQ 508 DG+ + IL +P P E A+DL RL RL R TDIDSS+VAL+FG DE S +++Q Sbjct: 339 DGVRHLTVSSEILDLVPDAPYEFALDLGRLARLHRDTDIDSSVVALIFGHDEASDALFEQ 398 Query: 509 VRRLKRAADVVWTYKAGGRNVLMTLLPLAGPAAVDGYLMRIETASHAQFDNKSLANFAAA 568 V R +RA DVVW + R ++TL+PL+G AV YL+RIE + AQF A + Sbjct: 399 VVRSRRALDVVWQVRGSARRAIVTLMPLSGAGAVSAYLVRIEDSLRAQFGVDFEAAHISV 458 Query: 569 HTAALGSDEPMRLLINLVERC 589 T + + P L + RC Sbjct: 459 QTLHVTGEHPGEALSRFLARC 479 >ref|YP_586294.1| hypothetical protein Rmet_4158 [Cupriavidus metallidurans CH34] gb|ABF11025.1| Conserved hypothetical protein [Cupriavidus metallidurans CH34] Length = 487 Score = 336 bits (861), Expect = 8e-90, Method: Composition-based stats. Identities = 183/436 (41%), Positives = 267/436 (61%), Gaps = 14/436 (3%) Query: 156 IVETIALVAAALAVAWWLSPEDPFGLEAQFPWLWLMPAILAMRYGSTLGVVAVATMLGGW 215 ++E I ++AAA+ + W + P++P L FPW WL+P ILA+RYG+ +GV AV +LGGW Sbjct: 34 VIEMIVIMAAAMGITWLVLPQNPLLLGMGFPWAWLLPVILALRYGTLVGVGAVLMLLGGW 93 Query: 216 YLLMHGHHEDEAQAVVSAAQAFPQAYFLGGLVLTLLCGQFAEVWNARSRRLRGVNAYLEE 275 + DE A + AFP+ +F+GGL+L L+ GQF +VWN R R R VN YL+E Sbjct: 94 FFF------DEIGA---HSGAFPRMFFMGGLLLVLVAGQFGDVWNTRLARARAVNRYLDE 144 Query: 276 RLTMLTKNHFLLRLSHERLEQDLLSKPLTLRESLDRMRALTLTQYLL--DPGRMPAPDAF 333 RL LTKNH+LLR+SH RLE DLL++P TLR++L ++RA+ L + G + Sbjct: 145 RLAALTKNHYLLRISHARLENDLLARPTTLRDTLSQLRAVALQDAMNGGKSGPLAGAQPM 204 Query: 334 LQILVQSCQVESASVFACDVHGHVLPEAVASVGKVTPLAADDPLVRYCLTQQKLGHIQTE 393 LQ++ Q+CQVE A+++ACD V+P AVAS+G + +DPLVR+CL + L H+++ Sbjct: 205 LQVVAQACQVEGAALYACDGE-RVVPNAVASIGPAFEIDVNDPLVRHCLETRALAHLRST 263 Query: 394 SLNQTLRNQSRYLVCAPLRNYEGRQFGLLVVEQLPFLALNEDTLQLMSVLIDYYADGIEM 453 L Q Q+RY+ AP+ R G+LVVE++PFL+L + LQ++ VL+ YYADG+E Sbjct: 264 GLQQDA--QTRYVAVAPVLAGSDRLIGVLVVERMPFLSLTYENLQMLMVLMGYYADGVEH 321 Query: 454 GDSARAILQQLPTCPPELAVDLVRLHRLKRSTDIDSSLVALVFGDDELSRDMYDQVRRLK 513 + I + P P A+D RL RL+ T I SS+VALVF DE +++QV R + Sbjct: 322 ARATHGIQEMAPAIPYAFALDYARLSRLRHETGIQSSVVALVFDLDEARDALFEQVVRSR 381 Query: 514 RAADVVWTYKAGGRNVLMTLLPLAGPAAVDGYLMRIETASHAQFDNKSLANFAAAHTAAL 573 RA DV W + ++TL+PL+ AV YL+RIE AQF + +T ++ Sbjct: 382 RALDVAWPVRNAHHRAMLTLMPLSDAQAVSAYLVRIEDMLRAQFGTDFSSAHIGVYTLSV 441 Query: 574 GSDEPMRLLINLVERC 589 ++ L+ L+ RC Sbjct: 442 PAEGAEEALMRLLHRC 457 >ref|YP_003751810.1| polysaccharide transport system component transmembrane protein (ragD) [Ralstonia solanacearum PSI07] emb|CBJ50513.1| putative polysaccharide transport system component transmembrane protein (ragD) [Ralstonia solanacearum PSI07] Length = 483 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 187/441 (42%), Positives = 256/441 (58%), Gaps = 23/441 (5%) Query: 156 IVETIALVAAALAVAWWLSPEDPFGLEAQFPWLWLMPAILAMRYGSTLGVVAVATMLGGW 215 I+ET+ A+ + W P++P L FPW+WL+P ILA+RYG+ LG VA M+G W Sbjct: 55 ILETLGATIVAIGIVWLFEPDNPLLLGHGFPWVWLVPLILALRYGTLLGAVAALVMVGAW 114 Query: 216 YLLMHGHHEDEAQAVVSAAQAFPQAYFLGGLVLTLLCGQFAEVWNARSRRLRGVNAYLEE 275 + V AFP+ YFLGGL++ L+ GQ+ ++W AR R R VN YL + Sbjct: 115 W-------------VFYGQGAFPRMYFLGGLMMMLVGGQYGDIWGARLSRARIVNGYLND 161 Query: 276 RLTMLTKNHFLLRLSHERLEQDLLSKPLTLRESLDRMRALTLTQY-------LLDPGRMP 328 RL LTKNHFLLRLSHERLE DLL+KP TLR++L ++R L L D ++P Sbjct: 162 RLAALTKNHFLLRLSHERLENDLLAKPTTLRDTLTQLRNLALAAREHASGDDAPDVAQLP 221 Query: 329 APDAFLQILVQSCQVESASVFACDVHGHVLPEAVASVGKVTPLAADDPLVRYCLTQQKLG 388 FLQ Q+CQ+E A++ V P VA VG + ADDPL+R+C+ LG Sbjct: 222 GATQFLQWASQACQLEVAAMVRV-AGSRVDPAPVARVGTPFEIVADDPLIRHCIDTHTLG 280 Query: 389 HIQTESLNQTLRNQSRYLVCAPLRNYEGRQFGLLVVEQLPFLALNEDTLQLMSVLIDYYA 448 H Q L + SRY+ CAP+ + G++VV+Q+PFL+L+ + LQ + VL+ YYA Sbjct: 281 HPQAPELRH--EDGSRYVACAPILSGADELIGIVVVQQMPFLSLSYENLQFLLVLLGYYA 338 Query: 449 DGIEMGDSARAILQQLPTCPPELAVDLVRLHRLKRSTDIDSSLVALVFGDDELSRDMYDQ 508 DG+ + IL +P P E A+DL RL RL R T IDSS+VAL+FG DE S +++Q Sbjct: 339 DGVRHLTVSSEILDLVPDAPYEFALDLGRLARLHRDTGIDSSVVALIFGHDEASDALFEQ 398 Query: 509 VRRLKRAADVVWTYKAGGRNVLMTLLPLAGPAAVDGYLMRIETASHAQFDNKSLANFAAA 568 V R +RA DVVW + R ++TL+PL+G AV YL+RIE + AQF A + Sbjct: 399 VVRSRRALDVVWQVRGSARRAIVTLMPLSGAGAVSAYLVRIEDSLRAQFGVDFEAAHISV 458 Query: 569 HTAALGSDEPMRLLINLVERC 589 T + + P L + RC Sbjct: 459 QTLHVTGEHPGEALSRFLARC 479