BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5359.p         (164 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777621.1| transmembrane protein [Herbaspirillum serope...   256   1e-66
ref|YP_586295.1| hypothetical protein Rmet_4159 [Cupriavidus met...   104   5e-21
ref|YP_841712.1| hypothetical protein H16_B2200 [Ralstonia eutro...   101   4e-20
ref|YP_002008607.1| hypothetical protein RALTA_B1976 [Cupriavidu...    99   2e-19
ref|YP_004682359.1| lipopolysaccharide N-acetylglucosaminyl tran...    99   3e-19

>ref|YP_003777621.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65713.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 346

 Score =  256 bits (653), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 126/154 (81%), Positives = 139/154 (90%)

Query: 1   MRNHLKTVSDPETLSILHQQVAELYQELIYQNLVQGDLLNYSYTQMREHARAALQIDAAQ 60
           +R+HLKTVSDPETL++LHQQVAELYQELIYQNLVQGDLL Y+ TQMREHARAAL ID  Q
Sbjct: 191 IRHHLKTVSDPETLAVLHQQVAELYQELIYQNLVQGDLLQYACTQMREHARAALAIDEGQ 250

Query: 61  PGLWFMLARMELANRNVADAAEAMQRAHEYGFSRVRLLPYLAELSFLEHDYEQVRKLFIE 120
           PGLWFML R+EL + N   AAEA+++AHE+GFSRVRLLPYLAELSFLEHDY+QVRKLFIE
Sbjct: 251 PGLWFMLVRLELMSGNAPGAAEALRQAHEHGFSRVRLLPYLAELSFLEHDYDQVRKLFIE 310

Query: 121 MQYDPSVSSQPQLHRYWRHGRRTIANRPDTFSPA 154
           MQYDPSVSSQPQLHRYWRHGRRTIANR D+   A
Sbjct: 311 MQYDPSVSSQPQLHRYWRHGRRTIANRSDSLPRA 344


>ref|YP_586295.1| hypothetical protein Rmet_4159 [Cupriavidus metallidurans CH34]
 gb|ABF11026.1| Conserved hypothetical protein [Cupriavidus metallidurans CH34]
          Length = 328

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 55/134 (41%), Positives = 81/134 (60%)

Query: 5   LKTVSDPETLSILHQQVAELYQELIYQNLVQGDLLNYSYTQMREHARAALQIDAAQPGLW 64
           L++   P+    ++Q++A+LY ELIYQNLVQGD+  Y+ +Q+  +A AAL+ID     LW
Sbjct: 194 LESADSPQARGEINQRLADLYWELIYQNLVQGDVYRYTASQVERYASAALEIDGNIAALW 253

Query: 65  FMLARMELANRNVADAAEAMQRAHEYGFSRVRLLPYLAELSFLEHDYEQVRKLFIEMQYD 124
           +M  R+ L     A+A E + RA   GF+R R+LP LAE ++LE DY  VR+L  +    
Sbjct: 254 YMRGRLALTRNAPAEAREFLARAEALGFARDRVLPLLAEAAYLERDYATVRRLMADFDSP 313

Query: 125 PSVSSQPQLHRYWR 138
             +     L RYW+
Sbjct: 314 SPLPLVRPLLRYWQ 327


>ref|YP_841712.1| hypothetical protein H16_B2200 [Ralstonia eutropha H16]
 emb|CAJ96982.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 328

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/134 (40%), Positives = 81/134 (60%)

Query: 5   LKTVSDPETLSILHQQVAELYQELIYQNLVQGDLLNYSYTQMREHARAALQIDAAQPGLW 64
           L++ +     + + +++A+LY ELIYQNLVQGD+  Y+ +Q+  +A AALQ D +   LW
Sbjct: 194 LESANSASERAEISKRLADLYWELIYQNLVQGDVYRYTASQVERYASAALQYDDSNASLW 253

Query: 65  FMLARMELANRNVADAAEAMQRAHEYGFSRVRLLPYLAELSFLEHDYEQVRKLFIEMQYD 124
           +M  R+ LA     +A E +QRA   GF+R R+LP+LAE ++LE DY  VR+L       
Sbjct: 254 YMRGRLALARNAPREAREWLQRAESLGFARERVLPHLAEAAYLERDYAAVRQLMASFDSP 313

Query: 125 PSVSSQPQLHRYWR 138
             +     L RYW+
Sbjct: 314 SPLPLVRPLLRYWQ 327


>ref|YP_002008607.1| hypothetical protein RALTA_B1976 [Cupriavidus taiwanensis LMG
           19424]
 emb|CAQ72555.1| Conserved Hypothetical protein, putative TRANSMEMBRANE PROTEIN;
           putative Protein prenylyltransferase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 328

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/134 (40%), Positives = 79/134 (58%)

Query: 5   LKTVSDPETLSILHQQVAELYQELIYQNLVQGDLLNYSYTQMREHARAALQIDAAQPGLW 64
           L+T   P   + + +++A+LY ELIYQNLVQGD+  Y+ +Q+  +A AAL  D +   LW
Sbjct: 194 LETAYSPSERAEISKRLADLYWELIYQNLVQGDVYRYTASQVERYASAALSHDDSNASLW 253

Query: 65  FMLARMELANRNVADAAEAMQRAHEYGFSRVRLLPYLAELSFLEHDYEQVRKLFIEMQYD 124
           +M  R+ LA     +A   +QRA   GF+R R+LP+LAE ++LE DY  VR+L       
Sbjct: 254 YMRGRLALARNAPREARAWLQRAEALGFARERVLPHLAEAAYLERDYATVRQLMASFDSP 313

Query: 125 PSVSSQPQLHRYWR 138
             +     L RYW+
Sbjct: 314 SPLPLVRPLLRYWQ 327


>ref|YP_004682359.1| lipopolysaccharide N-acetylglucosaminyl transferase [Cupriavidus
           necator N-1]
 gb|AEI81127.1| hypothetical protein CNE_2c21780 [Cupriavidus necator N-1]
          Length = 328

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/134 (38%), Positives = 81/134 (60%)

Query: 5   LKTVSDPETLSILHQQVAELYQELIYQNLVQGDLLNYSYTQMREHARAALQIDAAQPGLW 64
           L++ +     + + +++A+LY ELIYQNLVQGD+  Y+ +Q+  +A AAL+ D +   LW
Sbjct: 194 LESANSASERAEISKRLADLYWELIYQNLVQGDVYRYTASQVERYASAALEYDDSNASLW 253

Query: 65  FMLARMELANRNVADAAEAMQRAHEYGFSRVRLLPYLAELSFLEHDYEQVRKLFIEMQYD 124
           +M  R+ LA     +A + +QRA   GF+R R+LP+LAE ++LE DY  VR+L       
Sbjct: 254 YMRGRLALARNAPREARDWLQRAESLGFARERVLPHLAEAAYLERDYAAVRQLMASFDSP 313

Query: 125 PSVSSQPQLHRYWR 138
             +     L RYW+
Sbjct: 314 SPLPLVRPLLRYWQ 327