BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5355.p (293 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777617.1| AraC family transcription regulator protein ... 467 e-129 ref|YP_001352738.1| AraC family transcriptional regulator [Janth... 303 2e-80 ref|YP_159139.1| putative transcriptional regulator [Aromatoleum... 281 8e-74 ref|YP_003981359.1| AraC family transcriptional regulator [Achro... 263 2e-68 ref|YP_002028638.1| AraC family transcriptional regulator [Steno... 263 3e-68 >ref|YP_003777617.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65709.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 298 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 271/298 (90%), Positives = 276/298 (92%), Gaps = 5/298 (1%) Query: 1 MATLYASLIEHDPDRLDAAVTALRVHTSQSERETPFHSHRKGQLVVALHGAVTCETAQGM 60 MATLYASL+EHDPDRLDAAVTALRVHTSQ ERETP HSHRKGQLVVAL GAVTCETAQGM Sbjct: 1 MATLYASLVEHDPDRLDAAVTALRVHTSQDERETPLHSHRKGQLVVALRGAVTCETAQGM 60 Query: 61 WIVPPQSAVWIPPGVPHSNRVTLDGQLCFLFIAPHAASMPDQCCTLALSPLLVQMICHLA 120 WIVPPQSAVWIPPGVPHSNRVTLDGQLCFLFIAP AASMP+QCCTLALSPLLVQMICHLA Sbjct: 61 WIVPPQSAVWIPPGVPHSNRVTLDGQLCFLFIAPQAASMPEQCCTLALSPLLVQMICHLA 120 Query: 121 EQRQDYAPHERTARLASVLVEELEHSQRHALPLHLPVPQHSRLRAIARHLAEQPADRSTV 180 EQRQDYAPHERTARLA+VLVEELEHSQRHALPLHLP PQHSRLRAIARHLAE PADR TV Sbjct: 121 EQRQDYAPHERTARLAAVLVEELEHSQRHALPLHLPAPQHSRLRAIARHLAEHPADRRTV 180 Query: 181 AEWGQRHAMSERSFARFVQAETGMSFGRWRRQIHLMLALQWLASGSSVQRVSQDLGYESV 240 A+WGQRHAMSERSFARFVQAETGMSFGRWRRQIHLMLALQ LASGSSVQRVSQDLGY+SV Sbjct: 181 AQWGQRHAMSERSFARFVQAETGMSFGRWRRQIHLMLALQRLASGSSVQRVSQDLGYDSV 240 Query: 241 SAFITMFRNTLGKPPARYMAQRQA-----PLARPASSPPASPAAPYFQPTRNASWKPN 293 SAFITMFR TLGKPPARYMAQRQA P P S PPA AAPYFQPTR ASWKPN Sbjct: 241 SAFITMFRKTLGKPPARYMAQRQAQRQAPPAVPPPSVPPAHAAAPYFQPTRQASWKPN 298 >ref|YP_001352738.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR89134.1| transcriptional regulator, AraC family [Janthinobacterium sp. Marseille] Length = 259 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 159/262 (60%), Positives = 192/262 (73%), Gaps = 3/262 (1%) Query: 1 MATLYASLIEHDPDRLDAAVTALRVHTSQSERETPFHSHRKGQLVVALHGAVTCETAQGM 60 M TL S I+++ DRL ALR+ T SE E+P H HRKGQLVVALHG VTCE G+ Sbjct: 1 MVTLLGS-IDYNADRLFQPAVALRIDTEGSESESPIHMHRKGQLVVALHGGVTCEVPGGL 59 Query: 61 WIVPPQSAVWIPPGVPHSNRVTLDGQLCFLFIAPHAASMPDQCCTLALSPLLVQMICHLA 120 W+VPPQ VWIP G+PHSNR T + +LCFLF+ P AAS+P +C TLAL+PL+ +MI HLA Sbjct: 60 WMVPPQCGVWIPGGMPHSNRATANARLCFLFVEPGAASLPGECATLALTPLIREMILHLA 119 Query: 121 EQRQDYAPHERTARLASVLVEELEHSQRHALPLHLPVPQHSRLRAIARHLAEQPADRSTV 180 + Q Y P TA+L VL+ EL LHLPV H+RLR IA L + P DRSTV Sbjct: 120 DLPQHYPPDGHTAKLVEVLLSELVMMPTEQ--LHLPVSDHARLRQIASALTQHPDDRSTV 177 Query: 181 AEWGQRHAMSERSFARFVQAETGMSFGRWRRQIHLMLALQWLASGSSVQRVSQDLGYESV 240 AEWG+R AMSER+ AR V ETGM+FGRWRRQ+HL++ALQ LASG+SVQRVS+DLGY+SV Sbjct: 178 AEWGERFAMSERTLARLVLNETGMTFGRWRRQLHLIIALQRLASGASVQRVSEDLGYDSV 237 Query: 241 SAFITMFRNTLGKPPARYMAQR 262 SAFITMF+ LGK PARY + + Sbjct: 238 SAFITMFKKALGKSPARYFSDK 259 >ref|YP_159139.1| putative transcriptional regulator [Aromatoleum aromaticum EbN1] emb|CAI08238.1| putative transcriptional regulator [Aromatoleum aromaticum EbN1] Length = 275 Score = 281 bits (719), Expect = 8e-74, Method: Composition-based stats. Identities = 145/266 (54%), Positives = 186/266 (69%), Gaps = 2/266 (0%) Query: 1 MATLYASLIEHDPDRLDAAVTALRVHTSQSERETPFHSHRKGQLVVALHGAVTCETAQGM 60 M+ L SL DPD L + AL V + RE P H HRKGQLV+A G+VTCE G+ Sbjct: 1 MSNLLDSLARFDPDDLYSPAVALTVDIRDNSRELPVHQHRKGQLVLAARGSVTCEVPSGL 60 Query: 61 WIVPPQSAVWIPPGVPHSNRVTLDGQLCFLFIAPHAASMPDQCCTLALSPLLVQMICHLA 120 WIVPP AVWIP G+ H+NRV+L+G++C LFI P AA +P CCTL++SPLL ++I L Sbjct: 61 WIVPPHGAVWIPGGMAHTNRVSLNGRICLLFIEPDAAVLPASCCTLSVSPLLRELILRLV 120 Query: 121 EQRQDYAPHERTARLASVLVEELEHSQRHALPLHLPVPQHSRLRAIARHLAEQPADRSTV 180 E Q Y+ T RL +VL++EL Q A LHLP+ RLR IA L PADRST+ Sbjct: 121 ELPQSYSIDGPTGRLVAVLLDEL--VQMPAEQLHLPITAEPRLRRIADALMNDPADRSTM 178 Query: 181 AEWGQRHAMSERSFARFVQAETGMSFGRWRRQIHLMLALQWLASGSSVQRVSQDLGYESV 240 AEW +R ++ ER+ AR + ETGM+FGRWR+Q+H+++ALQ L++G +VQRV+QDLGYESV Sbjct: 179 AEWARRVSIGERTLARLIVGETGMTFGRWRQQLHIVIALQRLSTGMTVQRVAQDLGYESV 238 Query: 241 SAFITMFRNTLGKPPARYMAQRQAPL 266 SAFITMF+ LGKPPARY+ +R L Sbjct: 239 SAFITMFKKVLGKPPARYLVERGESL 264 >ref|YP_003981359.1| AraC family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP18644.1| bacterial regulatory helix-turn-helix protein, AraC family protein 34 [Achromobacter xylosoxidans A8] Length = 265 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 136/251 (54%), Positives = 182/251 (72%), Gaps = 2/251 (0%) Query: 12 DPDRLDAAVTALRVHTSQSERETPFHSHRKGQLVVALHGAVTCETAQGMWIVPPQSAVWI 71 +PD A+RVH ++++E+P H H GQLV++L G VTC QG+W+VPPQ VWI Sbjct: 12 NPDTGSQWTYAMRVHADENDQESPPHRHAMGQLVLSLQGGVTCSVPQGLWMVPPQCGVWI 71 Query: 72 PPGVPHSNRVTLDGQLCFLFIAPHAASMPDQCCTLALSPLLVQMICHLAEQRQDYAPHER 131 P GVPHSNRVT +G++CFLF+ P A +P+QCCTLA+S L+ +++ +LA+ + Sbjct: 72 PGGVPHSNRVTQNGRVCFLFVPPDAPGLPEQCCTLAISSLVRELVAYLADLPPEETATAP 131 Query: 132 TARLASVLVEELEHSQRHALPLHLPVPQHSRLRAIARHLAEQPADRSTVAEWGQRHAMSE 191 +LA VLV++L ++ A LHLP+ +H RLR IA L PADR TVA+WG+R AMSE Sbjct: 132 NRKLAEVLVDQL--ARMPAEQLHLPISEHPRLREIADALHADPADRGTVAQWGRRVAMSE 189 Query: 192 RSFARFVQAETGMSFGRWRRQIHLMLALQWLASGSSVQRVSQDLGYESVSAFITMFRNTL 251 R+ AR ++ E GMSFGRWR+Q+H++ ALQ L++G SVQR ++DLGYESVSAFITMFR TL Sbjct: 190 RTLARLIRQELGMSFGRWRQQMHIIQALQRLSAGVSVQRTAEDLGYESVSAFITMFRKTL 249 Query: 252 GKPPARYMAQR 262 GK PARY A + Sbjct: 250 GKTPARYFADK 260 >ref|YP_002028638.1| AraC family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gb|ACF51955.1| transcriptional regulator, AraC family [Stenotrophomonas maltophilia R551-3] Length = 264 Score = 263 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 137/262 (52%), Positives = 180/262 (68%), Gaps = 2/262 (0%) Query: 1 MATLYASLIEHDPDRLDAAVTALRVHTSQSERETPFHSHRKGQLVVALHGAVTCETAQGM 60 MA + + DPD D A R+ ++ + E P H HRKGQL++ALHGAVTCE A + Sbjct: 1 MARISLPGFDLDPDETDRPAVASRLQVAEHDAEIPVHEHRKGQLILALHGAVTCEVANAL 60 Query: 61 WIVPPQSAVWIPPGVPHSNRVTLDGQLCFLFIAPHAASMPDQCCTLALSPLLVQMICHLA 120 WIVPPQ VWIP G+PHSNR T + +LC+LF+ P +P QC TLA+SP+L +MI HLA Sbjct: 61 WIVPPQCGVWIPGGMPHSNRATANARLCYLFVEPGVVELPAQCVTLAISPMLREMILHLA 120 Query: 121 EQRQDYAPHERTARLASVLVEELEHSQRHALPLHLPVPQHSRLRAIARHLAEQPADRSTV 180 + DY T RLA VL++EL Q A L LPV H ++RA+A L+ PADRST+ Sbjct: 121 DAPLDYPHGSHTDRLARVLLDEL--VQMPAEHLSLPVSHHPKVRALAAALSADPADRSTI 178 Query: 181 AEWGQRHAMSERSFARFVQAETGMSFGRWRRQIHLMLALQWLASGSSVQRVSQDLGYESV 240 ++W R A+ ER+ R ++ ETG+SFGRWR+Q+HL++A++ LA G+ VQRVS+ LGYESV Sbjct: 179 SQWAMRLALGERTLTRLIERETGLSFGRWRQQLHLLIAIRELAGGAPVQRVSETLGYESV 238 Query: 241 SAFITMFRNTLGKPPARYMAQR 262 +AFITMF+ LG PARY A R Sbjct: 239 TAFITMFKKALGLSPARYFAVR 260