BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5351.p         (205 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08732169.1| RDD domain-containing protein [Vibrio nigripu...    84   1e-14
ref|ZP_08750708.1| RDD domain containing protein [Vibrio sp. N41...    80   2e-13
ref|ZP_01811540.1| cytidine deaminase [Vibrionales bacterium SWA...    73   3e-11
ref|ZP_08506273.1| Cytidine deaminase [Methyloversatilis univers...    70   2e-10
gb|EGU44742.1| RDD domain-containing protein [Vibrio splendidus ...    69   3e-10

>ref|ZP_08732169.1| RDD domain-containing protein [Vibrio nigripulchritudo ATCC 27043]
 gb|EGU60218.1| RDD domain-containing protein [Vibrio nigripulchritudo ATCC 27043]
          Length = 148

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 3/127 (2%)

Query: 76  RLPSVGRRLTAHILDMFVTIVGLFVVTIAMEKLSPAGRETNSMICVSLAVLYLLFKDGI- 134
           RL S GRR  A ++D  VT     ++  ++   S   R+   +I + LA +Y +F DG+ 
Sbjct: 22  RLASPGRRYVAQVIDGIVTWCIYLILLSSLNYFS-VERDLTDIISLCLAGMYFVFSDGLP 80

Query: 135 GGRSIGKLMMDMKVVSYKDGRACGLLQSAVRNV-SSLLGILDSIFALGKQRRRLGDLLAG 193
            G+S+GK ++ M V++ K+G  C L +S +RN  S +L I D++F LGK+R+RLGD  A 
Sbjct: 81  KGKSLGKHLLGMTVLNKKNGEYCSLWRSFLRNFFSPILWIFDAMFILGKKRQRLGDKFAS 140

Query: 194 TQVINSR 200
           T VI  +
Sbjct: 141 TIVIRDQ 147


>ref|ZP_08750708.1| RDD domain containing protein [Vibrio sp. N418]
 gb|EGU37322.1| RDD domain containing protein [Vibrio sp. N418]
          Length = 138

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/123 (39%), Positives = 73/123 (59%), Gaps = 3/123 (2%)

Query: 77  LPSVGRRLTAHILDMFVTIVGLFVVTIAMEKLSPAGRETNSMICVSLAVLYLLFKDGI-G 135
           L S G R     +D FV    +F+  + +       +ET S+I +  AVLY LF DG+  
Sbjct: 14  LASPGIRYIGQSID-FVISAAIFMFLLWITPKVGFEQETASLISIFTAVLYFLFSDGLPN 72

Query: 136 GRSIGKLMMDMKVVSYKDGRACGLLQSAVRNV-SSLLGILDSIFALGKQRRRLGDLLAGT 194
           G+S+GK ++ + V+S + G  C   QS  RN+ + ++G +D+IF LGK+R+RLGD LA T
Sbjct: 73  GQSLGKKLLGISVISTQSGNHCSFTQSFFRNLLTPVIGTIDAIFILGKKRQRLGDKLAKT 132

Query: 195 QVI 197
            V+
Sbjct: 133 VVV 135


>ref|ZP_01811540.1| cytidine deaminase [Vibrionales bacterium SWAT-3]
 gb|EDK30952.1| cytidine deaminase [Vibrionales bacterium SWAT-3]
          Length = 137

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/126 (35%), Positives = 74/126 (58%), Gaps = 3/126 (2%)

Query: 74  ALRLPSVGRRLTAHILDMFVTIVGLFVVTIAMEKLSPAGRETNSMICVSLAVLYLLFKDG 133
           A +L S GRR    ++D F++ + +F++ +++       ++        +A  Y L  DG
Sbjct: 11  AHKLASPGRRYVGELIDTFISAI-IFMLFLSLGNSIGLSQDITGWSASLIAASYFLLSDG 69

Query: 134 IG-GRSIGKLMMDMKVVSYKDGRACGLLQSAVRNV-SSLLGILDSIFALGKQRRRLGDLL 191
           +  G+S+GK ++ + V+    G +C L QS  RN+ S LLGI+D+ F LGK+R+R+GD L
Sbjct: 70  LPRGQSLGKKLLGISVIDSVTGESCSLTQSLFRNLLSPLLGIIDAFFILGKKRQRIGDKL 129

Query: 192 AGTQVI 197
           A T VI
Sbjct: 130 AKTAVI 135


>ref|ZP_08506273.1| Cytidine deaminase [Methyloversatilis universalis FAM5]
 gb|EGK70452.1| Cytidine deaminase [Methyloversatilis universalis FAM5]
          Length = 139

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 7/123 (5%)

Query: 79  SVGRRLTAHILDMFVTIVGLFVVTIAMEKLSPAGRETNSMICVSLAVLYLLFKDGI-GGR 137
           S+ RRL A I+D  + ++G  VV +            +    V   +LY+L  DG+ GG+
Sbjct: 16  SISRRLLAQIIDSAIALLGAVVVLLIARAFG-----LSESFSVLAWLLYMLLSDGLPGGQ 70

Query: 138 SIGKLMMDMKVVSYKDGRACGLLQSAVRNVSSL-LGILDSIFALGKQRRRLGDLLAGTQV 196
           SIGK +MD+ V+      AC   +S +RN + L LG++D +FALG  RRRLGD LA T V
Sbjct: 71  SIGKRVMDIAVLHAGSREACSWGRSFLRNATLLVLGVIDIVFALGSSRRRLGDRLADTVV 130

Query: 197 INS 199
           + +
Sbjct: 131 VRA 133


>gb|EGU44742.1| RDD domain-containing protein [Vibrio splendidus ATCC 33789]
          Length = 137

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/126 (34%), Positives = 72/126 (57%), Gaps = 3/126 (2%)

Query: 74  ALRLPSVGRRLTAHILDMFVTIVGLFVVTIAMEKLSPAGRETNSMICVSLAVLYLLFKDG 133
           A +L S GRR    ++D  ++ + +F++ +++       ++        +A  Y L  DG
Sbjct: 11  AYKLASPGRRYVGELIDSLISAI-IFMLFLSLGNSIGLSQDITGWSASLIAASYFLLSDG 69

Query: 134 IG-GRSIGKLMMDMKVVSYKDGRACGLLQSAVRNV-SSLLGILDSIFALGKQRRRLGDLL 191
           +  G+S+GK ++ + V+    G  C L QS  RN+ S LLGI+D+ F LGK+R+R+GD L
Sbjct: 70  LPRGQSLGKKLLGISVIDSITGENCSLKQSLFRNLLSPLLGIIDAFFILGKKRQRIGDKL 129

Query: 192 AGTQVI 197
           A T VI
Sbjct: 130 AKTAVI 135