BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5349.p         (233 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777612.1| transcription regulator protein [Herbaspiril...   360   1e-97
ref|YP_583982.1| GntR family transcriptional regulator [Cupriavi...   296   1e-78
ref|YP_295642.1| GntR family transcriptional regulator [Ralstoni...   288   4e-76
ref|YP_002005505.1| GntR family transcriptional regulator [Cupri...   285   4e-75
ref|YP_726063.1| GntR family transcriptional regulator [Ralstoni...   281   5e-74

>ref|YP_003777612.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65704.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 233

 Score =  360 bits (923), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 229/232 (98%), Positives = 230/232 (99%)

Query: 1   MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE 60
           MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE
Sbjct: 1   MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE 60

Query: 61  GVVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAE 120
           GVVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAE
Sbjct: 61  GVVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAE 120

Query: 121 DLQAIDAALVQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVT 180
           DLQAI+AAL QIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVT
Sbjct: 121 DLQAIEAALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVT 180

Query: 181 RGNEARYEDFSRQVREEHEAIVAAIRAGDEMAARNAAQTHMFNAARRLSQGQ 232
           RGNEARYEDFSRQVREEHEAIV AIRAGDEMAARNAAQTHMFNAARRLSQGQ
Sbjct: 181 RGNEARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLSQGQ 232


>ref|YP_583982.1| GntR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gb|ABF08713.1| transcriptional regulator, GntR-family [Cupriavidus metallidurans
           CH34]
          Length = 247

 Score =  296 bits (759), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 178/230 (77%), Positives = 204/230 (88%)

Query: 1   MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE 60
           MFQKIPA+AL+D+VA QLLE I+ G FPRG+KLPTEAVL+++FGVSRTV+REAIARLK+E
Sbjct: 1   MFQKIPARALTDSVAEQLLEKIEDGMFPRGAKLPTEAVLSEEFGVSRTVIREAIARLKYE 60

Query: 61  GVVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAE 120
           G+VE RQGSGVFVTEQAGI+PLRIDYT+V + E+VLQIVELRR+IEAEVAAQAA+RR+  
Sbjct: 61  GLVESRQGSGVFVTEQAGIRPLRIDYTDVGTLESVLQIVELRRSIEAEVAAQAARRRTDA 120

Query: 121 DLQAIDAALVQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVT 180
            +  IDAAL +I  +VAAGGDGV ADV FHRA+A+AT NPYF+KTL FLSQYLE AT VT
Sbjct: 121 TMANIDAALARIDAEVAAGGDGVDADVGFHRAIAEATGNPYFLKTLAFLSQYLETATRVT 180

Query: 181 RGNEARYEDFSRQVREEHEAIVAAIRAGDEMAARNAAQTHMFNAARRLSQ 230
           R NEAR EDFSRQVREEH+AIVAAIRAGD  AARNAAQ HM+NAARRLSQ
Sbjct: 181 RTNEARREDFSRQVREEHQAIVAAIRAGDPDAARNAAQNHMYNAARRLSQ 230


>ref|YP_295642.1| GntR family transcriptional regulator [Ralstonia eutropha JMP134]
 gb|AAZ60798.1| transcriptional regulator, GntR family [Ralstonia eutropha JMP134]
          Length = 245

 Score =  288 bits (738), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 175/230 (76%), Positives = 203/230 (88%)

Query: 1   MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE 60
           MFQK+PA+AL+D VA QLL+ I +GAF RG KLPTEAVL+++FGVSRTV+REAI+RLK+E
Sbjct: 1   MFQKVPARALTDNVAEQLLDKIQSGAFARGDKLPTEAVLSEEFGVSRTVIREAISRLKYE 60

Query: 61  GVVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAE 120
           GVVE RQGSGVFVTEQAGI+PLRIDYT+  + ++VLQIVELRRAIEAEVAAQAA+RR+  
Sbjct: 61  GVVESRQGSGVFVTEQAGIRPLRIDYTDTGTLDSVLQIVELRRAIEAEVAAQAARRRTDA 120

Query: 121 DLQAIDAALVQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVT 180
            + AID AL ++  +VA GGDGVAADVAFHRA+A AT NPYF+KTLEFLSQYLEAAT VT
Sbjct: 121 TMTAIDTALARLDAEVAEGGDGVAADVAFHRAIATATGNPYFLKTLEFLSQYLEAATRVT 180

Query: 181 RGNEARYEDFSRQVREEHEAIVAAIRAGDEMAARNAAQTHMFNAARRLSQ 230
           R NEAR  DF+RQVREEH+AIVAAIRAGD +AARNAAQ HM+NAARRLSQ
Sbjct: 181 RTNEARRADFTRQVREEHQAIVAAIRAGDALAARNAAQNHMYNAARRLSQ 230


>ref|YP_002005505.1| GntR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 emb|CAQ69438.1| putative transcriptional regulator, GntR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 244

 Score =  285 bits (729), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 175/230 (76%), Positives = 200/230 (86%)

Query: 1   MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE 60
           MFQK+PA+AL+D VA QLL+ I +GAF RG KLPTEAVL+++FGVSRTVVREAI+RLK+E
Sbjct: 1   MFQKVPARALTDNVAEQLLDKIQSGAFARGDKLPTEAVLSEEFGVSRTVVREAISRLKYE 60

Query: 61  GVVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAE 120
           GVVE RQGSGVFVT QAGI+PLRIDYT+  + E+VLQIVELRRAIEAEVAAQAA+RRS  
Sbjct: 61  GVVESRQGSGVFVTLQAGIRPLRIDYTDTGALESVLQIVELRRAIEAEVAAQAARRRSDA 120

Query: 121 DLQAIDAALVQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVT 180
            + AIDAAL ++   VA GGDGVA DV FHRA+A+AT NPYF+KTLEFLSQYLEAAT VT
Sbjct: 121 SMAAIDAALARLDDVVAQGGDGVAEDVGFHRAIAEATGNPYFLKTLEFLSQYLEAATRVT 180

Query: 181 RGNEARYEDFSRQVREEHEAIVAAIRAGDEMAARNAAQTHMFNAARRLSQ 230
           R NEAR  DFSRQVREEH+AIVAAIRAGD +AARNAAQ HM+NAA RL+Q
Sbjct: 181 RTNEARRADFSRQVREEHQAIVAAIRAGDPLAARNAAQNHMYNAAHRLAQ 230


>ref|YP_726063.1| GntR family transcriptional regulator [Ralstonia eutropha H16]
 emb|CAJ92695.1| transcriptional regulator, GntR-family [Ralstonia eutropha H16]
          Length = 244

 Score =  281 bits (719), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 175/230 (76%), Positives = 200/230 (86%)

Query: 1   MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE 60
           MFQK+PA+AL+D VA QLL+ I +GAF RG KLPTEAVL+ +FGVSRTVVREAI+RLK+E
Sbjct: 1   MFQKVPARALTDNVAEQLLDKIQSGAFARGDKLPTEAVLSGEFGVSRTVVREAISRLKYE 60

Query: 61  GVVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAE 120
           GVVE RQGSGVFVT QAGI+PLRIDYTE  + E+VLQIVELRRAIEAEVAAQAA+RR+  
Sbjct: 61  GVVESRQGSGVFVTLQAGIRPLRIDYTETGTLESVLQIVELRRAIEAEVAAQAARRRTDA 120

Query: 121 DLQAIDAALVQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVT 180
            + AIDAAL ++  +VA GGDGVA DVAFHRA+A+AT NPYF+KTL FLSQYLEAAT VT
Sbjct: 121 SMAAIDAALARLDEEVAQGGDGVAEDVAFHRAIAEATGNPYFLKTLAFLSQYLEAATRVT 180

Query: 181 RGNEARYEDFSRQVREEHEAIVAAIRAGDEMAARNAAQTHMFNAARRLSQ 230
           R NEAR  DFSRQVREEH+AIVAAIRAGD +AARNAAQ HM+NAA RL+Q
Sbjct: 181 RTNEARRADFSRQVREEHQAIVAAIRAGDPLAARNAAQNHMYNAAHRLAQ 230